Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.L001695 Phaseolus vulgaris HOM05D004812 ORTHO05D005721 6.2e-39 163.7 85 100.0
VMungo1309G0464 Vigna mungo HOM05D004812 ORTHO05D005721 2.4e-30 135.2 98 74.5
Glyma.06G049600 Glycine max HOM05D004812 ORTHO05D005721 3.9e-25 117.9 95 70.5
Glyma.04G048400 Glycine max HOM05D004812 ORTHO05D005721 5.1e-25 117.5 100 68.0
Thecc.08G083100 Theobroma cacao HOM05D004812 ORTHO05D005721 1.9e-24 115.5 78 74.4
Duzib093G1850 Durio zibethinus HOM05D004812 ORTHO05D005721 3.3e-24 114.8 78 76.9
Lalb_Chr23g0267661 Lupinus albus HOM05D004812 ORTHO05D005721 1.6e-23 112.5 99 62.6
Duzib041G0236 Durio zibethinus HOM05D004812 ORTHO05D005721 2.8e-23 111.7 80 73.8
Gohir.A05G212600 Gossypium hirsutum HOM05D004812 ORTHO05D005721 4.8e-23 110.9 92 65.2
Gorai.009G222500 Gossypium raimondii HOM05D004812 ORTHO05D005721 4.8e-23 110.9 92 65.2
Gohir.D05G215800 Gossypium hirsutum HOM05D004812 ORTHO05D005721 8.2e-23 110.2 92 65.2
Duzib041G0573 Durio zibethinus HOM05D004812 ORTHO05D005721 1.4e-22 109.4 85 69.4
TWI56G0383 Tripterygium wilfordii HOM05D004812 ORTHO05D005721 1.4e-22 109.4 79 70.9
FvH4_2g32490 Fragaria vesca HOM05D004812 ORTHO05D005721 6.9e-22 107.1 79 68.4
Psat6g018520 Pisum sativum HOM05D004812 ORTHO05D005721 6.9e-22 107.1 91 67.0
CARHR259230 Cardamine hirsuta HOM05D004812 ORTHO05D005721 9.0e-22 106.7 94 61.7
Dinv39198 Davidia involucrata HOM05D004812 ORTHO05D005721 9.0e-22 106.7 93 63.4
Glyma.14G090500 Glycine max HOM05D004812 ORTHO05D005721 9.0e-22 106.7 83 66.3
CSS0032884 Camellia sinensis var. sinensis HOM05D004812 ORTHO05D005721 2.6e-21 105.1 93 62.4
CiPaw.07G171000 Carya illinoinensis HOM05D004812 ORTHO05D005721 4.5e-21 104.4 94 62.8
QL09p016104 Quercus lobata HOM05D004812 ORTHO05D005721 7.6e-21 103.6 93 61.3
BcaB01g02879 Brassica carinata HOM05D004812 ORTHO05D005721 1.0e-20 103.2 106 57.5
BcaC01g04783 Brassica carinata HOM05D004812 ORTHO05D005721 1.3e-20 102.8 107 54.2
A03p27930 Brassica napus HOM05D004812 ORTHO05D005721 1.3e-20 102.8 107 54.2
C03p33720 Brassica napus HOM05D004812 ORTHO05D005721 1.3e-20 102.8 107 54.2
BolC3t15691H Brassica oleracea HOM05D004812 ORTHO05D005721 1.3e-20 102.8 107 54.2
BraA03t12006Z Brassica rapa HOM05D004812 ORTHO05D005721 1.3e-20 102.8 107 54.2
Cfa013725 Carpinus fangiana HOM05D004812 ORTHO05D005721 1.3e-20 102.8 93 61.3
THA.LOC104799834 Tarenaya hassleriana HOM05D004812 ORTHO05D005721 1.3e-20 102.8 106 57.5
ECA232G4694 Erigeron canadensis HOM05D000006 ORTHO05D000001 1.7e-20 102.4 70 71.4
Thhalv10028923m.g Eutrema salsugineum HOM05D004812 ORTHO05D005721 2.2e-20 102.1 106 56.6
Prupe.1G418000 Prunus persica HOM05D004812 ORTHO05D005721 2.2e-20 102.1 93 61.3
Sp6g10230 Schrenkiella parvula HOM05D004812 ORTHO05D005721 2.2e-20 102.1 106 56.6
Medtr1g017260 Medicago truncatula HOM05D004812 ORTHO05D005721 2.9e-20 101.7 91 62.6
VMungo0647G0241 Vigna mungo HOM05D004812 ORTHO05D005721 2.9e-20 101.7 83 63.9
Haze_22372 Corylus avellana HOM05D004812 ORTHO05D005721 3.8e-20 101.3 93 61.3
Aa31sc619G20 Aethionema arabicum HOM05D004812 ORTHO05D005721 8.4e-20 100.1 106 56.6
Cpa.g.sc160.27 Carica papaya HOM05D004812 ORTHO05D005721 8.4e-20 100.1 95 60.0
Atru.chr13.882 Acer truncatum HOM05D004812 ORTHO05D005721 1.4e-19 99.4 111 55.9
Actinidia29636 Actinidia chinensis HOM05D004812 ORTHO05D005721 1.4e-19 99.4 93 60.2
Lj1g0006267 Lotus japonicus HOM05D004812 ORTHO05D005721 1.4e-19 99.4 95 61.1
TWI36G1081 Tripterygium wilfordii HOM05D004812 ORTHO05D005721 1.9e-19 99.0 93 61.3
Cc10_g07760 Coffea canephora HOM05D004812 ORTHO05D005721 2.5e-19 98.6 92 59.8
Peaxi162Scf01161g00329 Petunia axillaris HOM05D004812 ORTHO05D005721 3.2e-19 98.2 93 55.9
AL6G41350 Arabidopsis lyrata HOM05D004812 ORTHO05D005721 4.2e-19 97.8 88 61.4
Manes.18G050200 Manihot esculenta HOM05D004812 ORTHO05D005721 5.5e-19 97.4 77 64.9
Gohir.A06G026800 Gossypium hirsutum HOM05D004812 ORTHO05D005721 7.1e-19 97.1 92 60.9
Lsat_1_v5_gn_9_79341 Lactuca sativa HOM05D004812 ORTHO05D005721 1.6e-18 95.9 93 54.8
Gohir.D06G024100 Gossypium hirsutum HOM05D004812 ORTHO05D005721 2.1e-18 95.5 92 59.8
Gorai.010G028600 Gossypium raimondii HOM05D004812 ORTHO05D005721 2.1e-18 95.5 92 59.8
Ca_06989_v3 Cicer arietinum L. HOM05D004812 ORTHO05D005721 3.5e-18 94.7 88 60.2
Hma1.2p1_1230F.1_g268750 Hydrangea macrophylla HOM05D004812 ORTHO05D005721 3.5e-18 94.7 92 57.6
Glyma.17G232245 Glycine max HOM05D004812 ORTHO05D005721 4.6e-18 94.4 85 62.4
Phvul.001G031700 Phaseolus vulgaris HOM05D004812 ORTHO05D005721 4.6e-18 94.4 85 62.4
PGSC0003DMG400004945 Solanum tuberosum HOM05D004812 ORTHO05D005721 4.6e-18 94.4 99 54.5
TAR381G1267 Trochodendron aralioides HOM05D004812 ORTHO05D005721 4.6e-18 94.4 93 57.0
Dinv44924 Davidia involucrata HOM05D004812 ORTHO05D005721 6.0e-18 94.0 94 58.5
CiPaw.08G053200 Carya illinoinensis HOM05D004812 ORTHO05D005721 7.9e-18 93.6 99 56.6
Potri.002G114600 Populus trichocarpa HOM05D004812 ORTHO05D005721 7.9e-18 93.6 79 65.8
FAN15G0694 Fragaria x ananassa HOM05D004812 ORTHO05D005721 1.3e-17 92.8 99 52.5
FAN20G0597 Fragaria x ananassa HOM05D004812 ORTHO05D005721 1.3e-17 92.8 99 52.5
FAN27G1358 Fragaria x ananassa HOM05D004812 ORTHO05D005721 1.3e-17 92.8 99 52.5
Rhsim07G0216800 Rhododendron simsii HOM05D004812 ORTHO05D005721 1.8e-17 92.4 117 48.7
arahy.Tifrunner.gnm1.ann1.HYM163 Arachis hypogaea HOM05D004812 ORTHO05D005721 2.3e-17 92.0 102 55.9
FAN24G1448 Fragaria x ananassa HOM05D004812 ORTHO05D005721 2.3e-17 92.0 99 52.5
Sabra05G0117000 Salix brachista HOM05D004812 ORTHO05D005721 2.3e-17 92.0 97 52.6
Lj4A77G54 Lonicera japonica HOM05D004812 ORTHO05D005721 3.0e-17 91.7 117 47.9
arahy.Tifrunner.gnm1.ann1.4PX4MG Arachis hypogaea HOM05D004812 ORTHO05D005721 3.9e-17 91.3 102 52.9
Ca_15883_v3 Cicer arietinum L. HOM05D004812 ORTHO05D005721 6.7e-17 90.5 99 53.5
Psat5g042400 Pisum sativum HOM05D004812 ORTHO05D005721 6.7e-17 90.5 97 51.5
arahy.Tifrunner.gnm1.ann1.PWJU0J Arachis hypogaea HOM05D004812 ORTHO05D005721 8.7e-17 90.1 102 54.9
MSTRG.25014 Avicennia marina HOM05D004812 ORTHO05D005721 1.1e-16 89.7 90 60.0
Eucgr.F02213 Eucalyptus grandis HOM05D004812 ORTHO05D005721 1.5e-16 89.4 86 53.5
EL10Ac1g02340 Beta vulgaris HOM05D004812 ORTHO05D005721 3.3e-16 88.2 82 61.0
MSTRG.923 Avicennia marina HOM05D004812 ORTHO05D005721 4.3e-16 87.8 93 54.8
MBI16_g36640_MAGBIO Magnolia biondii HOM05D004812 ORTHO05D005721 5.7e-16 87.4 95 54.7
Potri.005G146600 Populus trichocarpa HOM05D004812 ORTHO05D005721 5.7e-16 87.4 93 57.0
Sabra02G0090600 Salix brachista HOM05D004812 ORTHO05D005721 5.7e-16 87.4 94 55.3
Lj5g0016152 Lotus japonicus HOM05D004812 ORTHO05D005721 7.4e-16 87.0 87 58.6
Migut.C00441 Erythranthe guttata HOM05D004812 ORTHO05D005721 6.3e-15 84.0 93 53.8
Eucgr.F00104 Eucalyptus grandis HOM05D004812 ORTHO05D005721 1.8e-14 82.4 91 50.5
Nn6g34543 Nelumbo nucifera HOM05D004812 ORTHO05D005721 1.8e-14 82.4 83 59.0
Manes.05G184100 Manihot esculenta HOM05D004812 ORTHO05D005721 2.4e-14 82.0 98 52.0
Lalb_Chr24g0399541 Lupinus albus HOM05D004812 ORTHO05D005721 4.1e-14 81.3 82 56.1
TPR.G13010 Trifolium pratense HOM05D004812 ORTHO05D005721 4.1e-14 81.3 90 53.3
HanXRQChr04g0110461 Helianthus annuus HOM05D004812 ORTHO05D005721 1.2e-13 79.7 85 51.8
CSS0043183 Camellia sinensis var. sinensis HOM05D004812 ORTHO05D005721 2.0e-13 79.0 79 55.7
Carub.0006s2656 Capsella rubella HOM05D004812 ORTHO05D005721 2.0e-13 79.0 98 51.0
SGA_v2.0_scaffold238G43884 Striga asiatica HOM05D004812 ORTHO05D005721 2.6e-13 78.6 92 51.1
vmacro04604 Vaccinium macrocarpon HOM05D004812 ORTHO05D005721 2.6e-13 78.6 79 53.2
Migut.N02802 Erythranthe guttata HOM05D004812 ORTHO05D005721 3.4e-13 78.2 83 56.6
Medtr3g103530 Medicago truncatula HOM05D004812 ORTHO05D005721 3.4e-13 78.2 94 47.9
ClCG08G016760 Citrullus lanatus HOM05D004812 ORTHO05D005721 4.5e-13 77.8 94 51.1
CsaV3_2G025860 Cucumis sativus L. HOM05D004812 ORTHO05D005721 7.7e-13 77.0 93 49.5
TPR.G30200 Trifolium pratense HOM05D004812 ORTHO05D005721 7.7e-13 77.0 98 48.0
MELO3C010780.2 Cucumis melo HOM05D004812 ORTHO05D005721 1.7e-12 75.9 93 50.5
AT4G07990 Arabidopsis thaliana HOM05D004812 ORTHO05D005721 2.2e-12 75.5 104 51.0
Aqoxy6G02958 Aquilegia oxysepala HOM05D004812 ORTHO05D005721 3.8e-12 74.7 86 51.2
Hund05266 Selenicereus undatus HOM05D004812 ORTHO05D005721 3.8e-12 74.7 103 47.6
Actinidia19286 Actinidia chinensis HOM05D004812 ORTHO05D005721 5.0e-12 74.3 98 50.0
GSVIVG01009286001 Vitis vinifera HOM05D004812 ORTHO05D005721 6.5e-12 73.9 93 47.3
HanXRQChr08g0226381 Helianthus annuus HOM05D004812 ORTHO05D005721 8.5e-12 73.6 82 52.4
PGR031G3368 Punica granatum HOM05D004812 ORTHO05D005721 4.2e-11 71.2 86 46.5
Sed0005944 Sechium edule HOM05D004812 ORTHO05D005721 4.2e-11 71.2 91 48.4
Nitab4.5_0001494g0140 Nicotiana tabacum HOM05D004812 ORTHO05D005721 5.5e-11 70.9 102 42.2
Os03g0728100 Oryza sativa ssp. japonica HOM05D004812 ORTHO05D005721 9.4e-11 70.1 90 46.7
Duzib041G0506 Durio zibethinus HOM05D004812 ORTHO05D005721 1.2e-10 69.7 70 54.3
Sopen04g031020 Solanum pennellii HOM05D004812 ORTHO05D005721 1.2e-10 69.7 91 44.0
Ciclev10002309m.g Citrus clementina HOM05D004812 ORTHO05D005721 1.6e-10 69.3 88 48.9
CAN.G416.6 Capsicum annuum HOM05D004812 ORTHO05D005721 2.1e-10 68.9 91 42.9
MD15G1064000 Malus domestica HOM05D004812 ORTHO05D005721 2.1e-10 68.9 90 45.6
Oeu048563.2 Olea europaea HOM05D004812 ORTHO05D005721 2.1e-10 68.9 93 41.9
MD08G1076700 Malus domestica HOM05D004812 ORTHO05D005721 2.7e-10 68.6 92 44.6
Solyc04g077430.4 Solanum lycopersicum HOM05D004812 ORTHO05D005721 6.1e-10 67.4 91 42.9
CANSAT11G0724 Cannabis sativa HOM05D004812 ORTHO05D005721 7.9e-10 67.0 94 46.8
Rhsim06G0065600 Rhododendron simsii HOM05D004812 ORTHO05D005721 2.3e-09 65.5 95 42.1
HPP92_017696 Vanilla planifolia HOM05D004812 ORTHO05D005721 2.3e-09 65.5 86 45.3
Zm00001eb215650 Zea mays HOM05D004812 ORTHO05D005721 3.0e-09 65.1 93 45.2
vmacro21405 Vaccinium macrocarpon HOM05D004812 ORTHO05D005721 6.7e-09 63.9 114 42.1
PGR083G2836 Punica granatum HOM05D004812 ORTHO05D005721 1.5e-08 62.8 78 43.6
HPP92_011732 Vanilla planifolia HOM05D004812 ORTHO05D005721 1.5e-08 62.8 78 48.7
Ah.05g166930 Amaranthus hybridus HOM05D004812 ORTHO05D005721 5.7e-08 60.8 94 43.6
RcHm_v2.0_Chr6g0310161 Rosa chinensis HOM05D004812 ORTHO05D005721 1.3e-07 59.7 72 44.4
PSO541G3106 Papaver somniferum HOM05D004812 ORTHO05D005721 3.1e-06 55.1 91 41.8
PSO675G4508 Papaver somniferum HOM05D004812 ORTHO05D005721 3.1e-06 55.1 91 41.8
unitig_744.g24118 Utricularia gibba HOM05D004812 ORTHO05D005721 9.1e-06 53.5 87 42.5


User provided reference genes

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