Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.L001688 Phaseolus vulgaris HOM05D005134 ORTHO05D006548 1.3e-188 662.9 330 100.0
VMungo0720G0573 Vigna mungo HOM05D005134 ORTHO05D006548 7.0e-171 604.0 330 91.5
Glyma.10G166800 Glycine max HOM05D005134 ORTHO05D006548 5.4e-155 551.2 319 85.3
Lj5g0005697 Lotus japonicus HOM05D005134 ORTHO05D006548 5.2e-134 481.5 356 69.7
Glyma.20G222300 Glycine max HOM05D005134 ORTHO05D006548 1.5e-133 479.9 283 84.5
Lalb_Chr02g0149171 Lupinus albus HOM05D005134 ORTHO05D006548 2.1e-130 469.5 364 70.3
TPR.G32267 Trifolium pratense HOM05D005134 ORTHO05D006548 1.9e-128 463.0 318 74.2
Medtr1g079925 Medicago truncatula HOM05D005134 ORTHO05D006548 2.2e-124 449.5 307 74.3
arahy.Tifrunner.gnm1.ann1.MCCA8X Arachis hypogaea HOM05D005134 ORTHO05D006548 1.8e-118 429.9 350 64.9
arahy.Tifrunner.gnm1.ann1.JQR6X4 Arachis hypogaea HOM05D005134 ORTHO05D006548 2.6e-117 426.0 350 64.6
RcHm_v2.0_Chr3g0449951 Rosa chinensis HOM05D005134 ORTHO05D006548 2.0e-109 399.8 326 64.1
Thecc.05G272900 Theobroma cacao HOM05D005134 ORTHO05D006548 2.1e-106 389.8 321 62.0
Prupe.6G348800 Prunus persica HOM05D005134 ORTHO05D006548 1.8e-105 386.7 321 62.9
Manes.09G148800 Manihot esculenta HOM05D005134 ORTHO05D006548 3.0e-105 386.0 337 59.9
TAR365G0228 Trochodendron aralioides HOM05D005134 ORTHO05D006548 5.1e-105 385.2 320 60.3
Dinv14615 Davidia involucrata HOM05D005134 ORTHO05D006548 8.7e-105 384.4 323 59.8
MD12G1246100 Malus domestica HOM05D005134 ORTHO05D006548 2.5e-104 382.9 316 63.9
CiPaw.08G117800 Carya illinoinensis HOM05D005134 ORTHO05D006548 7.4e-104 381.3 328 62.8
QL03p031652 Quercus lobata HOM05D005134 ORTHO05D006548 9.6e-104 380.9 299 64.9
QL09p031144 Quercus lobata HOM05D005134 ORTHO05D006548 9.6e-104 380.9 299 64.9
Gohir.D13G173500 Gossypium hirsutum HOM05D005134 ORTHO05D006548 1.6e-103 380.2 323 61.3
TAR636G3303 Trochodendron aralioides HOM05D005134 ORTHO05D006548 2.8e-103 379.4 311 60.1
CANSAT54G0719 Cannabis sativa HOM05D005134 ORTHO05D006548 4.8e-103 378.6 326 62.0
FvH4_6g02180 Fragaria vesca HOM05D005134 ORTHO05D006548 4.8e-103 378.6 312 62.2
FAN05G3609 Fragaria x ananassa HOM05D005134 ORTHO05D006548 1.4e-102 377.1 312 62.2
PGR004G2085 Punica granatum HOM05D005134 ORTHO05D006548 1.4e-102 377.1 326 61.0
GSVIVG01036192001 Vitis vinifera HOM05D005134 ORTHO05D006548 2.4e-102 376.3 324 60.2
Gohir.A13G168200 Gossypium hirsutum HOM05D005134 ORTHO05D006548 9.0e-102 374.4 320 62.5
FAN14G0587 Fragaria x ananassa HOM05D005134 ORTHO05D006548 1.5e-101 373.6 312 61.5
Eucgr.H04250 Eucalyptus grandis HOM05D005134 ORTHO05D006548 2.0e-101 373.2 237 75.5
Ciclev10001967m.g Citrus clementina HOM05D005134 ORTHO05D006548 3.4e-101 372.5 326 58.6
Gorai.013G187000 Gossypium raimondii HOM05D005134 ORTHO05D006548 4.5e-101 372.1 300 63.3
Cpa.g.sc162.33 Carica papaya HOM05D005134 ORTHO05D006548 2.9e-100 369.4 225 76.9
Potri.019G017900 Populus trichocarpa HOM05D005134 ORTHO05D006548 2.9e-100 369.4 322 59.6
Duzib177G0085 Durio zibethinus HOM05D005134 ORTHO05D006548 3.8e-100 369.0 320 60.0
Eucgr.H04279 Eucalyptus grandis HOM05D005134 ORTHO05D006548 3.8e-100 369.0 266 68.8
Ca_10010_v3 Cicer arietinum L. HOM05D005134 ORTHO05D006548 4.9e-100 368.6 275 70.2
THA.LOC104807079 Tarenaya hassleriana HOM05D005134 ORTHO05D006548 4.9e-100 368.6 334 58.1
TWI63G1834 Tripterygium wilfordii HOM05D005134 ORTHO05D006548 6.5e-100 368.2 247 67.6
FAN05G5817 Fragaria x ananassa HOM05D005134 ORTHO05D006548 8.4e-100 367.9 312 60.9
Nn1g02742 Nelumbo nucifera HOM05D005134 ORTHO05D006548 1.4e-99 367.1 320 59.1
Aa31LG2G12350 Aethionema arabicum HOM05D005134 ORTHO05D006548 2.5e-99 366.3 333 55.6
CSS0005455 Camellia sinensis var. sinensis HOM05D005134 ORTHO05D006548 3.2e-99 365.9 227 74.9
Aqoxy5G00231 Aquilegia oxysepala HOM05D005134 ORTHO05D006548 2.1e-98 363.2 244 70.9
Actinidia04451 Actinidia chinensis HOM05D005134 ORTHO05D006548 7.9e-98 361.3 264 65.2
Nitab4.5_0000044g0220 Nicotiana tabacum HOM05D005134 ORTHO05D006548 1.0e-97 360.9 234 70.5
Nitab4.5_0011884g0010 Nicotiana tabacum HOM05D005134 ORTHO05D006548 1.0e-97 360.9 235 69.8
Sc09g0004160 Simmondsia chinensis HOM05D005134 ORTHO05D006548 1.0e-97 360.9 328 57.9
MBI18_g13184_MAGBIO Magnolia biondii HOM05D005134 ORTHO05D006548 1.8e-97 360.1 215 76.3
Rhsim04G0183700 Rhododendron simsii HOM05D005134 ORTHO05D006548 3.0e-97 359.4 256 67.2
Thhalv10027851m.g Eutrema salsugineum HOM05D005134 ORTHO05D006548 3.9e-97 359.0 324 56.2
Peaxi162Scf00409g00421 Petunia axillaris HOM05D005134 ORTHO05D006548 3.9e-97 359.0 220 74.1
Lj3A700T11 Lonicera japonica HOM05D005134 ORTHO05D006548 6.7e-97 358.2 236 69.5
MELO3C004420.2 Cucumis melo HOM05D005134 ORTHO05D006548 8.7e-97 357.8 326 56.4
Sabra13G0042100 Salix brachista HOM05D005134 ORTHO05D006548 1.1e-96 357.5 216 76.4
Potri.013G045800 Populus trichocarpa HOM05D005134 ORTHO05D006548 1.3e-95 354.0 226 74.3
Carub.0003s3480 Capsella rubella HOM05D005134 ORTHO05D006548 2.8e-95 352.8 340 55.3
Hma1.2p1_1006F.1_g247010 Hydrangea macrophylla HOM05D005134 ORTHO05D006548 3.7e-95 352.4 245 66.9
CARHR110960 Cardamine hirsuta HOM05D005134 ORTHO05D006548 4.8e-95 352.1 334 53.9
CsaV3_2G003750 Cucumis sativus L. HOM05D005134 ORTHO05D006548 4.8e-95 352.1 259 65.6
SpUn0001_1010 Schrenkiella parvula HOM05D005134 ORTHO05D006548 4.8e-95 352.1 320 57.8
AL3G53380 Arabidopsis lyrata HOM05D005134 ORTHO05D006548 6.2e-95 351.7 334 56.0
Sopen09g032960 Solanum pennellii HOM05D005134 ORTHO05D006548 2.4e-94 349.7 213 75.6
MSTRG.21911 Avicennia marina HOM05D005134 ORTHO05D006548 4.0e-94 349.0 231 70.1
CDE02G0996 Ceratophyllum demersum HOM05D005134 ORTHO05D006548 6.9e-94 348.2 319 57.1
Sed0011924 Sechium edule HOM05D005134 ORTHO05D006548 9.0e-94 347.8 324 56.2
CAN.G793.56 Capsicum annuum HOM05D005134 ORTHO05D006548 1.5e-93 347.1 239 68.6
Sed0016660 Sechium edule HOM05D005134 ORTHO05D006548 1.5e-93 347.1 235 72.3
PGSC0003DMG400017174 Solanum tuberosum HOM05D005134 ORTHO05D006548 3.4e-93 345.9 213 74.6
FAN02G2775 Fragaria x ananassa HOM05D005134 ORTHO05D006548 5.8e-93 345.1 380 50.8
Oeu028977.1 Olea europaea HOM05D005134 ORTHO05D006548 7.6e-93 344.7 225 68.9
EL10Ac3g05020 Beta vulgaris HOM05D005134 ORTHO05D006548 1.0e-92 344.4 251 65.3
AUR62002121 Chenopodium quinoa HOM05D005134 ORTHO05D006548 1.0e-92 344.4 245 66.5
PSO173G0035 Papaver somniferum HOM05D005134 ORTHO05D006548 1.0e-92 344.4 224 71.9
ClCG02G016990 Citrullus lanatus HOM05D005134 ORTHO05D006548 1.7e-92 343.6 346 54.6
Haze_04438 Corylus avellana HOM05D005134 ORTHO05D006548 1.7e-92 343.6 250 68.0
Ah.04g155980 Amaranthus hybridus HOM05D005134 ORTHO05D006548 3.8e-92 342.4 250 68.0
Cc03_g05430 Coffea canephora HOM05D005134 ORTHO05D006548 3.8e-92 342.4 240 66.2
AUR62028240 Chenopodium quinoa HOM05D005134 ORTHO05D006548 5.0e-92 342.0 245 66.5
AT2G20410 Arabidopsis thaliana HOM05D005134 ORTHO05D006548 6.5e-92 341.7 344 54.1
Manes.08G138000 Manihot esculenta HOM05D005134 ORTHO05D006548 8.4e-92 341.3 320 55.6
HPP92_025481 Vanilla planifolia HOM05D005134 ORTHO05D006548 2.5e-91 339.7 219 72.6
COL.COLO4_15462 Corchorus olitorius HOM05D005134 ORTHO05D006548 3.2e-91 339.3 304 58.2
HPP92_015212 Vanilla planifolia HOM05D005134 ORTHO05D006548 5.5e-91 338.6 221 70.6
vmacro02444 Vaccinium macrocarpon HOM05D005134 ORTHO05D006548 2.1e-90 336.7 228 70.2
BcaB04g20137 Brassica carinata HOM05D005134 ORTHO05D006548 2.7e-90 336.3 216 71.8
Atru.chr6.1561 Acer truncatum HOM05D005134 ORTHO05D006548 7.9e-90 334.7 231 67.5
Migut.N00267 Erythranthe guttata HOM05D005134 ORTHO05D006548 7.9e-90 334.7 218 72.0
Solyc09g090050.4 Solanum lycopersicum HOM05D005134 ORTHO05D006548 1.0e-89 334.3 194 76.3
Hund03036 Selenicereus undatus HOM05D005134 ORTHO05D006548 2.3e-89 333.2 275 59.3
GSVIVG01027798001 Vitis vinifera HOM05D005134 ORTHO05D006548 2.3e-89 333.2 204 74.0
Actinidia34743 Actinidia chinensis HOM05D005134 ORTHO05D006548 3.0e-89 332.8 351 52.7
Lsat_1_v5_gn_3_118860 Lactuca sativa HOM05D005134 ORTHO05D006548 3.0e-89 332.8 222 69.4
PSO170G6910 Papaver somniferum HOM05D005134 ORTHO05D006548 3.0e-89 332.8 215 67.9
BcaC09g49624 Brassica carinata HOM05D005134 ORTHO05D006548 5.1e-89 332.0 330 53.6
SalBow3G1367 Salvia bowleyana HOM05D005134 ORTHO05D006548 6.7e-89 331.6 262 61.5
C01p34370 Brassica napus HOM05D005134 ORTHO05D006548 1.1e-88 330.9 216 70.4
BolC1t03407H Brassica oleracea HOM05D005134 ORTHO05D006548 1.1e-88 330.9 216 70.4
HanXRQChr03g0091791 Helianthus annuus HOM05D005134 ORTHO05D006548 1.1e-88 330.9 234 67.1
Zm00001eb210280 Zea mays HOM05D005134 ORTHO05D006548 1.1e-88 330.9 222 70.7
ATR0730G220 Amborella trichopoda HOM05D005134 ORTHO05D006548 1.9e-88 330.1 214 71.0
ECA240G2747 Erigeron canadensis HOM05D005134 ORTHO05D006548 5.7e-88 328.6 230 69.1
Aqoxy2G03635 Aquilegia oxysepala HOM05D005134 ORTHO05D006548 1.6e-87 327.0 305 56.7
SHI23170 Sapria himalayana HOM05D005134 ORTHO05D006548 8.2e-87 324.7 237 65.8
EL10Ac4g09067 Beta vulgaris HOM05D005134 ORTHO05D006548 6.9e-86 321.6 328 52.1
Eucgr.H04252 Eucalyptus grandis HOM05D005134 ORTHO05D006548 1.3e-84 317.4 294 58.8
SEGI_05528 Sequoiadendron giganteum HOM05D005134 ORTHO05D006548 2.9e-84 316.2 224 65.2
unitig_0.g910 Utricularia gibba HOM05D005134 ORTHO05D006548 8.5e-84 314.7 216 67.1
Hund06912 Selenicereus undatus HOM05D005134 ORTHO05D006548 1.9e-83 313.5 306 55.6
vmacro08495 Vaccinium macrocarpon HOM05D005134 ORTHO05D006548 1.8e-78 297.0 408 41.7
Cfa006341 Carpinus fangiana HOM05D005617 ORTHO05D006548 2.4e-78 296.6 182 76.4
MD04G1229000 Malus domestica HOM05D005134 ORTHO05D006548 5.9e-77 292.0 345 51.0
FAN09G4497 Fragaria x ananassa HOM05D005134 ORTHO05D006548 2.9e-76 289.7 197 70.1
Psat6g143200 Pisum sativum HOM05D005134 ORTHO05D006548 7.9e-74 281.6 265 59.6
GSVIVG01027796001 Vitis vinifera HOM05D005134 ORTHO05D006548 1.7e-71 273.9 219 62.1
Eucgr.H04289 Eucalyptus grandis HOM05D005134 ORTHO05D006548 8.2e-71 271.6 239 57.7
Rhsim13G0009400 Rhododendron simsii HOM05D005134 ORTHO05D006548 7.0e-70 268.5 284 53.9
Mapoly0025s0138 Marchantia polymorpha HOM05D005134 ORTHO05D006548 2.6e-69 266.5 209 59.3
Ah.06g191930 Amaranthus hybridus HOM05D005134 ORTHO05D006548 1.0e-68 264.6 264 54.5
AUR62004857 Chenopodium quinoa HOM05D005134 ORTHO05D006548 2.9e-68 263.1 257 53.7
Actinidia01853 Actinidia chinensis HOM05D005134 ORTHO05D006548 2.5e-59 233.4 260 48.8
HPP92_015224 Vanilla planifolia HOM05D005134 ORTHO05D006548 3.2e-59 233.0 221 54.3
Eucgr.H04247 Eucalyptus grandis HOM05D005134 ORTHO05D006548 1.2e-56 224.6 123 79.7
SGA_v2.0_scaffold308G48086 Striga asiatica HOM05D005134 ORTHO05D006548 1.5e-56 224.2 129 72.9
Os03g0860000 Oryza sativa ssp. japonica HOM05D005134 ORTHO05D006548 4.4e-56 222.6 123 79.7
SMO367G0112 Selaginella moellendorffii HOM05D005134 ORTHO05D006548 9.8e-56 221.5 162 61.7
AUR62040940 Chenopodium quinoa HOM05D005134 ORTHO05D006548 1.4e-54 217.6 230 50.0
Actinidia38945 Actinidia chinensis HOM05D005134 ORTHO05D006548 4.1e-54 216.1 131 74.0
DCAR_002321 Daucus carota HOM05D005134 ORTHO05D006548 7.0e-54 215.3 164 63.4
Dinv29871 Davidia involucrata HOM05D005134 ORTHO05D006548 4.7e-50 202.6 168 58.3
SEGI_11048 Sequoiadendron giganteum HOM05D005134 ORTHO05D006548 8.0e-42 175.3 159 54.7
AagrBONN_evm.TU.Sc2ySwM_344.1164 Anthoceros agrestis HOM05D005134 ORTHO05D006548 6.8e-41 172.2 123 61.0
Cre16.g655100 Chlamydomonas reinhardtii HOM05D005134 ORTHO05D006548 2.7e-37 160.2 199 41.7
vmacro02443 Vaccinium macrocarpon HOM05D005134 ORTHO05D006548 5.8e-32 142.5 86 73.3
Manes.15G040000 Manihot esculenta HOM05D005134 ORTHO05D006548 1.0e-28 131.7 84 70.2
Eucgr.H04286 Eucalyptus grandis HOM05D005134 ORTHO05D006548 1.8e-25 120.9 133 50.4
VMungo0720G1819 Vigna mungo HOM05D005134 ORTHO05D006548 1.0e-20 105.1 68 83.8
Duzib177G1154 Durio zibethinus HOM05D005134 ORTHO05D013855 3.1e-17 93.6 124 47.6
FAN14G5434 Fragaria x ananassa HOM05D005134 ORTHO05D006548 1.5e-16 91.3 121 47.9
RcHm_v2.0_Chr6g0274061 Rosa chinensis HOM05D005134 ORTHO05D006548 3.3e-11 73.6 76 56.6
Eucgr.H04277 Eucalyptus grandis HOM05D005134 ORTHO05D194288 5.8e-08 62.8 190 31.1
FAN06G2241 Fragaria x ananassa HOM05D005134 ORTHO05D006548 7.6e-08 62.4 32 75.0
ATR0598G211 Amborella trichopoda HOM05D005134 ORTHO05D067863 1.4e-06 58.2 76 39.5


User provided reference genes

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