Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.L001685 Phaseolus vulgaris HOM05D006728 ORTHO05D007911 0.0e+00 1322.0 671 100.0
VMungo0720G2132 Vigna mungo HOM05D006728 ORTHO05D007911 6.6e-285 983.8 666 77.5
Glyma.02G174700 Glycine max HOM05D006728 ORTHO05D007911 2.4e-250 869.0 648 71.3
Glyma.10G191500 Glycine max HOM05D006728 ORTHO05D007911 1.8e-229 799.7 582 72.9
Ca_09788_v3 Cicer arietinum L. HOM05D006728 ORTHO05D007911 7.7e-201 704.5 668 58.1
Lalb_Chr21g0312581 Lupinus albus HOM05D006728 ORTHO05D007911 4.7e-198 695.3 637 59.2
Psat6g140120 Pisum sativum HOM05D006728 ORTHO05D007911 1.0e-192 677.6 667 56.2
Medtr1g072850 Medicago truncatula HOM05D006728 ORTHO05D007911 2.2e-187 659.8 672 56.1
TPR.G18562 Trifolium pratense HOM05D006728 ORTHO05D007911 1.0e-184 651.0 659 55.5
Lj5g0018420 Lotus japonicus HOM05D006728 ORTHO05D007911 2.0e-180 636.7 663 56.7
arahy.Tifrunner.gnm1.ann1.2Y318K Arachis hypogaea HOM05D006728 ORTHO05D007911 5.4e-154 548.9 689 48.9
CiPaw.03G020000 Carya illinoinensis HOM05D006728 ORTHO05D007911 5.5e-130 469.2 717 41.6
QL09p005234 Quercus lobata HOM05D006728 ORTHO05D007911 1.6e-121 441.0 690 41.7
arahy.Tifrunner.gnm1.ann1.PFS1J6 Arachis hypogaea HOM05D006728 ORTHO05D007911 3.7e-118 429.9 502 51.2
Haze_13898 Corylus avellana HOM05D006728 ORTHO05D007911 1.1e-117 428.3 697 41.8
arahy.Tifrunner.gnm1.ann1.SM6YYV Arachis hypogaea HOM05D006728 ORTHO05D007911 6.9e-117 425.6 503 51.1
arahy.Tifrunner.gnm1.ann1.HTR7VF Arachis hypogaea HOM05D006728 ORTHO05D007911 1.2e-116 424.9 503 50.9
TAR381G1619 Trochodendron aralioides HOM05D006728 ORTHO05D007911 1.0e-112 411.8 700 38.9
GSVIVG01012775001 Vitis vinifera HOM05D006728 ORTHO05D007911 3.7e-110 403.3 698 39.7
Atru.chr13.2383 Acer truncatum HOM05D006728 ORTHO05D007911 1.2e-108 398.3 656 39.8
Actinidia23017 Actinidia chinensis HOM05D006728 ORTHO05D007911 3.8e-107 393.3 719 38.5
COL.COLO4_24796 Corchorus olitorius HOM05D006728 ORTHO05D007911 8.5e-107 392.1 695 37.0
Potri.004G133900 Populus trichocarpa HOM05D006728 ORTHO05D007911 1.4e-106 391.3 695 37.4
Dinv41739 Davidia involucrata HOM05D006728 ORTHO05D007911 2.7e-105 387.1 706 38.0
MD15G1410500 Malus domestica HOM05D006728 ORTHO05D007911 1.1e-103 381.7 698 37.5
Sabra04G0084300 Salix brachista HOM05D006728 ORTHO05D007911 2.0e-103 380.9 699 37.2
Gorai.009G264600 Gossypium raimondii HOM05D006728 ORTHO05D007911 2.2e-102 377.5 714 36.0
Gohir.D05G252600 Gossypium hirsutum HOM05D006728 ORTHO05D007911 4.8e-102 376.3 713 36.0
Gohir.A05G251200 Gossypium hirsutum HOM05D006728 ORTHO05D007911 1.2e-100 371.7 734 35.1
CSS0015483 Camellia sinensis var. sinensis HOM05D006728 ORTHO05D007911 1.0e-99 368.6 664 38.3
Manes.01G125500 Manihot esculenta HOM05D006728 ORTHO05D007911 6.1e-97 359.4 690 35.9
Hma1.2p1_0705F.1_g206940 Hydrangea macrophylla HOM05D006728 ORTHO05D007911 6.7e-96 355.9 705 36.3
Prupe.1G552000 Prunus persica HOM05D006728 ORTHO05D007911 9.7e-95 352.1 547 41.1
Ciclev10004396m.g Citrus clementina HOM05D006728 ORTHO05D007911 8.2e-94 349.0 689 35.3
FvH4_5g32290 Fragaria vesca HOM05D006728 ORTHO05D007911 1.4e-93 348.2 704 36.8
Rhsim10G0109300 Rhododendron simsii HOM05D006728 ORTHO05D007911 1.8e-93 347.8 661 36.9
FAN08G1230 Fragaria x ananassa HOM05D006728 ORTHO05D007911 7.0e-93 345.9 701 35.9
FAN18G3195 Fragaria x ananassa HOM05D006728 ORTHO05D007911 1.6e-92 344.7 704 36.6
FAN13G2633 Fragaria x ananassa HOM05D006728 ORTHO05D007911 2.0e-92 344.4 704 36.1
FAN04G0014 Fragaria x ananassa HOM05D006728 ORTHO05D007911 7.7e-92 342.4 704 36.2
MELO3C022215.2 Cucumis melo HOM05D006728 ORTHO05D007911 1.0e-91 342.0 702 34.5
Sed0021340 Sechium edule HOM05D006728 ORTHO05D007911 6.5e-91 339.3 731 34.7
ClCG08G000330 Citrullus lanatus HOM05D006728 ORTHO05D007911 2.5e-90 337.4 723 34.2
RcHm_v2.0_Chr7g0228481 Rosa chinensis HOM05D006728 ORTHO05D007911 1.6e-89 334.7 628 37.6
TWI23G0528 Tripterygium wilfordii HOM05D006728 ORTHO05D007911 3.6e-89 333.6 667 35.7
CsaV3_5G040430 Cucumis sativus L. HOM05D006728 ORTHO05D007911 1.8e-88 331.3 678 33.9
TWI59G0071 Tripterygium wilfordii HOM05D006728 ORTHO05D007911 5.2e-88 329.7 672 35.7
vmacro12473 Vaccinium macrocarpon HOM05D006728 ORTHO05D007911 4.4e-87 326.6 551 38.8
Cc10_g10290 Coffea canephora HOM05D006728 ORTHO05D007911 2.8e-86 323.9 696 34.1
Oeu051790.1 Olea europaea HOM05D006728 ORTHO05D007911 7.7e-84 315.8 550 37.1
Peaxi162Scf00391g00619 Petunia axillaris HOM05D006728 ORTHO05D007911 7.7e-84 315.8 705 35.7
Thecc.03G072600 Theobroma cacao HOM05D006728 ORTHO05D007911 1.2e-81 308.5 471 41.0
THA.LOC104799928 Tarenaya hassleriana HOM05D006728 ORTHO05D007911 8.0e-81 305.8 715 31.7
CAN.G102.5 Capsicum annuum HOM05D006728 ORTHO05D007911 1.4e-80 305.1 701 34.8
PGR044G1487 Punica granatum HOM05D006728 ORTHO05D007911 1.4e-80 305.1 716 33.2
Nn1g02058 Nelumbo nucifera HOM05D006728 ORTHO05D007911 5.2e-80 303.1 671 34.1
Eucgr.J01411 Eucalyptus grandis HOM05D006728 ORTHO05D007911 8.8e-80 302.4 644 34.2
MSTRG.1553 Avicennia marina HOM05D006728 ORTHO05D007911 3.4e-79 300.4 615 34.5
SalBow7G3045 Salvia bowleyana HOM05D006728 ORTHO05D007911 1.0e-75 288.9 665 33.1
Sopen11g011050 Solanum pennellii HOM05D006728 ORTHO05D007911 2.3e-75 287.7 699 33.9
SGA_v2.0_scaffold144G35834 Striga asiatica HOM05D005033 ORTHO05D007005 8.6e-75 285.8 684 32.7
Nitab4.5_0000365g0060 Nicotiana tabacum HOM05D006728 ORTHO05D007911 1.9e-74 284.6 708 34.0
PGSC0003DMG400009266 Solanum tuberosum HOM05D006728 ORTHO05D007911 2.5e-74 284.3 704 34.1
Migut.C01293 Erythranthe guttata HOM05D006728 ORTHO05D007911 1.2e-73 282.0 694 34.4
ECA232G4554 Erigeron canadensis HOM05D006728 ORTHO05D007911 8.0e-73 279.3 621 32.0
Migut.J01202 Erythranthe guttata HOM05D006728 ORTHO05D007911 1.2e-68 265.4 627 34.3
Lsat_1_v5_gn_4_133160 Lactuca sativa HOM05D006728 ORTHO05D007911 2.7e-68 264.2 615 32.8
unitig_749.g13882 Utricularia gibba HOM05D006728 ORTHO05D007911 1.7e-67 261.5 615 33.7
DCAR_011523 Daucus carota HOM05D006728 ORTHO05D007911 3.3e-66 257.3 716 30.2
HanXRQChr17g0559021 Helianthus annuus HOM05D006728 ORTHO05D007911 4.3e-66 256.9 638 32.0
CARHR235190 Cardamine hirsuta HOM05D006728 ORTHO05D007911 3.1e-64 250.8 668 31.7
AT4G27510 Arabidopsis thaliana HOM05D006728 ORTHO05D007911 1.1e-61 242.3 618 32.0
PSO144G0035 Papaver somniferum HOM05D006728 ORTHO05D007911 3.5e-60 237.3 700 30.3
Cpa.g.c30412.3 Carica papaya HOM05D006728 ORTHO05D007911 6.0e-60 236.5 475 34.7
BraA01t01819Z Brassica rapa HOM05D006728 ORTHO05D007911 1.3e-59 235.3 614 32.7
Aa31LG5G9990 Aethionema arabicum HOM05D006728 ORTHO05D007911 1.7e-59 235.0 719 28.2
Nitab4.5_0004437g0010 Nicotiana tabacum HOM05D006728 ORTHO05D007911 3.9e-59 233.8 596 32.7
Sp7g25450 Schrenkiella parvula HOM05D006728 ORTHO05D007911 6.6e-59 233.0 695 29.8
A01p18730 Brassica napus HOM05D006728 ORTHO05D007911 1.9e-58 231.5 609 31.7
C01p23690 Brassica napus HOM05D006728 ORTHO05D007911 3.3e-58 230.7 611 32.6
BolC1t02321H Brassica oleracea HOM05D006728 ORTHO05D007911 3.3e-58 230.7 611 32.6
Glyma.20G198732 Glycine max HOM05D006728 ORTHO05D007911 5.6e-58 229.9 152 76.3
arahy.Tifrunner.gnm1.ann1.G54CSB Arachis hypogaea HOM05D006728 ORTHO05D007911 1.2e-57 228.8 679 30.2
Aqoxy7G02767 Aquilegia oxysepala HOM05D006728 ORTHO05D007911 4.0e-56 223.8 686 31.0
SHI29298 Sapria himalayana HOM05D006728 ORTHO05D007911 5.2e-56 223.4 508 32.1
Solyc11g020910.3 Solanum lycopersicum HOM05D006728 ORTHO05D007911 6.8e-56 223.0 509 34.8
PSO325G0011 Papaver somniferum HOM05D006728 ORTHO05D007911 1.2e-55 222.2 661 30.7
Carub.0007s1334 Capsella rubella HOM05D006728 ORTHO05D007911 8.3e-54 216.1 668 29.6
Thhalv10024534m.g Eutrema salsugineum HOM05D006728 ORTHO05D007911 9.2e-53 212.6 665 29.0
ATR0487G015 Amborella trichopoda HOM05D006728 ORTHO05D007911 5.1e-51 206.8 526 30.8
Sc24g0002590 Simmondsia chinensis HOM05D006728 ORTHO05D007911 8.1e-49 199.5 610 30.3
PSO325G0006 Papaver somniferum HOM05D006728 ORTHO05D007911 2.3e-48 198.0 569 32.3
BcaNung07241 Brassica carinata HOM05D006728 ORTHO05D007911 5.8e-47 193.4 608 30.8
EL10Ac7g16629 Beta vulgaris HOM05D006728 ORTHO05D007911 2.2e-46 191.4 628 28.8
Hund02381 Selenicereus undatus HOM05D006728 ORTHO05D007911 2.7e-44 184.5 628 29.3
AUR62037055 Chenopodium quinoa HOM05D006728 ORTHO05D007911 3.6e-41 174.1 631 27.4
PSO170G3307 Papaver somniferum HOM05D006728 ORTHO05D007911 4.7e-41 173.7 678 28.2
Glyma.20G198666 Glycine max HOM05D006728 ORTHO05D007911 1.8e-40 171.8 146 65.1
Atru.chr1.2802 Acer truncatum HOM05D006728 ORTHO05D007911 7.6e-39 166.4 282 40.4
TPR.G18439 Trifolium pratense HOM05D006728 ORTHO05D007911 3.5e-36 157.5 230 43.5
AUR62036525 Chenopodium quinoa HOM05D006728 ORTHO05D007911 7.8e-36 156.4 475 28.8
PSO170G3890 Papaver somniferum HOM05D006728 ORTHO05D007911 3.0e-27 127.9 400 30.8
TPR.G18438 Trifolium pratense HOM05D006728 ORTHO05D007911 4.8e-25 120.6 136 50.7
arahy.Tifrunner.gnm1.ann1.Z8YKXQ Arachis hypogaea HOM05D006728 ORTHO05D007911 7.6e-23 113.2 145 45.5
HPP92_000129 Vanilla planifolia HOM05D006728 ORTHO05D007911 5.4e-21 107.1 619 23.7
Nn3g16574 Nelumbo nucifera HOM05D006728 ORTHO05D007911 1.6e-20 105.5 699 22.3
SEGI_13662 Sequoiadendron giganteum HOM05D013057 ORTHO05D007911 2.7e-20 104.8 576 25.0
Atru.chr1.2803 Acer truncatum HOM05D006728 ORTHO05D007911 3.1e-16 91.3 130 43.8
Zm00001eb295040 Zea mays HOM05D006728 ORTHO05D007911 1.9e-13 82.0 591 22.5
Cpa.g.c34985.1 Carica papaya HOM05D006728 ORTHO05D007911 1.2e-12 79.3 192 30.2
Cfa008144 Carpinus fangiana HOM05D006728 ORTHO05D007911 3.5e-12 77.8 77 50.6
Os02g0461200 Oryza sativa ssp. japonica HOM05D006728 ORTHO05D007911 3.3e-10 71.2 636 23.3
CDE05G2798 Ceratophyllum demersum HOM05D006728 ORTHO05D007911 1.5e-07 62.4 64 46.9


User provided reference genes

Program Settings