Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.L001673 Phaseolus vulgaris HOM05D005167 ORTHO05D006312 1.0e-154 550.1 277 100.0
Glyma.13G026000 Glycine max HOM05D005167 ORTHO05D006312 1.2e-83 313.9 296 59.1
CiPaw.15G107300 Carya illinoinensis HOM05D005167 ORTHO05D006312 5.1e-66 255.4 318 46.5
CiPaw.15G107200 Carya illinoinensis HOM05D005167 ORTHO05D006312 1.6e-64 250.4 324 44.8
Atru.chr9.69 Acer truncatum HOM05D005167 ORTHO05D006312 1.1e-63 247.7 257 51.8
CARHR046110 Cardamine hirsuta HOM05D005167 ORTHO05D006312 9.0e-63 244.6 281 50.9
SpUn0422_0010 Schrenkiella parvula HOM05D005167 ORTHO05D006312 5.0e-61 238.8 282 48.6
Duzib116G0260 Durio zibethinus HOM05D005167 ORTHO05D006312 6.5e-61 238.4 294 47.6
Nn3g20631 Nelumbo nucifera HOM05D005167 ORTHO05D006312 6.5e-61 238.4 289 47.8
Carub.0003s3540 Capsella rubella HOM05D005167 ORTHO05D006312 8.5e-61 238.0 281 49.1
A03p66890 Brassica napus HOM05D005167 ORTHO05D006312 2.1e-59 233.4 280 47.5
BraA01t02792Z Brassica rapa HOM05D005167 ORTHO05D006312 2.1e-59 233.4 280 47.5
TAR629G0123 Trochodendron aralioides HOM05D005167 ORTHO05D006312 3.6e-59 232.6 315 44.8
C07p02160 Brassica napus HOM05D005167 ORTHO05D006312 1.3e-58 230.7 280 47.1
BolC7t40625H Brassica oleracea HOM05D005167 ORTHO05D006312 1.3e-58 230.7 280 47.1
Thhalv10028036m.g Eutrema salsugineum HOM05D005167 ORTHO05D006312 1.8e-58 230.3 283 47.3
Actinidia12290 Actinidia chinensis HOM05D005167 ORTHO05D006312 6.7e-58 228.4 317 43.8
Cc00_g01280 Coffea canephora HOM05D005167 ORTHO05D006312 8.7e-58 228.0 254 49.6
GSVIVG01029417001 Vitis vinifera HOM05D005167 ORTHO05D006312 2.5e-57 226.5 257 48.2
Thecc.07G187300 Theobroma cacao HOM05D005167 ORTHO05D006312 4.3e-57 225.7 304 46.1
BcaB03g16877 Brassica carinata HOM05D005167 ORTHO05D006312 7.4e-57 224.9 273 47.3
Lju225A7G63 Lonicera japonica HOM05D005167 ORTHO05D006312 7.4e-57 224.9 263 48.7
Cpa.g.sc15.42 Carica papaya HOM05D005167 ORTHO05D006312 9.7e-57 224.6 286 45.1
Dinv01746 Davidia involucrata HOM05D005167 ORTHO05D006312 9.7e-57 224.6 357 40.9
Gohir.D09G002700 Gossypium hirsutum HOM05D005167 ORTHO05D006312 9.7e-57 224.6 282 46.5
ClCG04G000020 Citrullus lanatus HOM05D005167 ORTHO05D006312 1.6e-56 223.8 255 47.5
TWI15G0790 Tripterygium wilfordii HOM05D005167 ORTHO05D006312 4.8e-56 222.2 270 46.7
ClCG08G000010 Citrullus lanatus HOM05D005167 ORTHO05D006312 2.4e-55 219.9 256 47.3
CANSAT64G2797 Cannabis sativa HOM05D005167 ORTHO05D006312 2.9e-53 213.0 291 40.9
CAN.G989.3 Capsicum annuum HOM05D005167 ORTHO05D006312 5.0e-53 212.2 256 45.3
Prupe.4G287800 Prunus persica HOM05D005167 ORTHO05D006312 1.4e-52 210.7 277 45.1
Sopen02g001190 Solanum pennellii HOM05D005167 ORTHO05D006312 2.5e-52 209.9 252 44.0
Nitab4.5_0005690g0020 Nicotiana tabacum HOM05D005167 ORTHO05D006312 1.2e-51 207.6 268 44.0
Oeu000168.1 Olea europaea HOM05D005167 ORTHO05D006312 1.2e-51 207.6 299 41.8
MD00G1096100 Malus domestica HOM05D005167 ORTHO05D006312 3.6e-51 206.1 289 43.9
Sed0010261 Sechium edule HOM05D005167 ORTHO05D006312 1.8e-50 203.8 272 45.2
Aqoxy4G01544 Aquilegia oxysepala HOM05D005167 ORTHO05D006312 1.1e-49 201.1 262 45.8
Nn5g27095 Nelumbo nucifera HOM05D005167 ORTHO05D006312 3.3e-49 199.5 403 33.3
Manes.18G143300 Manihot esculenta HOM05D005167 ORTHO05D006312 4.3e-49 199.1 299 40.8
Ciclev10030405m.g Citrus clementina HOM05D005167 ORTHO05D006312 7.4e-49 198.4 254 45.7
Migut.N00879 Erythranthe guttata HOM05D005167 ORTHO05D006312 1.3e-48 197.6 305 40.0
PSO170G3824 Papaver somniferum HOM05D005167 ORTHO05D006312 2.2e-48 196.8 361 37.7
MELO3C034515.2 Cucumis melo HOM05D005167 ORTHO05D006312 8.2e-48 194.9 309 39.2
Hund15261 Selenicereus undatus HOM05D005167 ORTHO05D006312 4.5e-46 189.1 376 35.6
BcaC08g44461 Brassica carinata HOM05D005167 ORTHO05D006312 7.7e-46 188.3 275 41.1
PGSC0003DMG400014526 Solanum tuberosum HOM05D005167 ORTHO05D006312 7.7e-46 188.3 238 43.3
Lsat_1_v5_gn_8_167100 Lactuca sativa HOM05D005167 ORTHO05D006312 2.2e-45 186.8 267 43.4
FAN19G3173 Fragaria x ananassa HOM05D005167 ORTHO05D006312 1.9e-44 183.7 294 42.5
FAN26G1264 Fragaria x ananassa HOM05D005167 ORTHO05D006312 1.9e-44 183.7 288 42.4
Ah.02g128610 Amaranthus hybridus HOM05D005167 ORTHO05D006312 9.4e-44 181.4 385 33.2
SGA_v2.0_scaffold150G36624 Striga asiatica HOM05D005167 ORTHO05D006312 9.4e-44 181.4 277 41.2
Nitab4.5_0001246g0010 Nicotiana tabacum HOM05D005167 ORTHO05D006312 4.7e-43 179.1 246 42.3
RcHm_v2.0_Chr3g0496761 Rosa chinensis HOM05D005167 ORTHO05D006312 6.1e-43 178.7 337 39.8
HanXRQChr15g0488451 Helianthus annuus HOM05D005167 ORTHO05D006312 1.0e-42 177.9 323 37.5
Eucgr.B01586 Eucalyptus grandis HOM05D005167 ORTHO05D006312 1.4e-42 177.6 271 40.2
Thecc.06G025200 Theobroma cacao HOM05D005167 ORTHO05D006312 1.4e-42 177.6 337 36.2
Nitab4.5_0007926g0020 Nicotiana tabacum HOM05D005167 ORTHO05D006312 1.8e-42 177.2 246 42.7
Dinv24548 Davidia involucrata HOM05D000457 ORTHO05D000560 2.3e-42 176.8 392 33.2
HPP92_025056 Vanilla planifolia HOM05D005167 ORTHO05D006312 2.3e-42 176.8 341 32.8
Hma1.2p1_0052F.1_g030120 Hydrangea macrophylla HOM05D005167 ORTHO05D006312 2.0e-41 173.7 393 32.8
SalBow3G4053 Salvia bowleyana HOM05D005167 ORTHO05D006312 4.4e-41 172.6 378 31.7
Sc07g0003350 Simmondsia chinensis HOM05D005167 ORTHO05D006312 4.4e-41 172.6 343 35.0
Sc07g0003360 Simmondsia chinensis HOM05D005167 ORTHO05D006312 4.4e-41 172.6 343 35.0
C06p19120 Brassica napus HOM05D005167 ORTHO05D006312 3.7e-40 169.5 213 46.5
BolC6t37111H Brassica oleracea HOM05D005167 ORTHO05D006312 3.7e-40 169.5 213 46.5
Lj9C241G5 Lonicera japonica HOM05D005167 ORTHO05D006312 3.7e-40 169.5 383 32.4
QL01p052835 Quercus lobata HOM05D005167 ORTHO05D006312 3.7e-40 169.5 136 63.2
Duzib160G0520 Durio zibethinus HOM05D005167 ORTHO05D006312 8.2e-40 168.3 340 34.7
QL93p1868_0064 Quercus lobata HOM05D005167 ORTHO05D006312 1.1e-39 167.9 136 62.5
HanXRQChr12g0386151 Helianthus annuus HOM05D005167 ORTHO05D006312 1.4e-39 167.5 265 40.8
SGA_v2.0_scaffold401G50971 Striga asiatica HOM05D005167 ORTHO05D006312 2.4e-39 166.8 356 32.9
EL10Ac6g13938 Beta vulgaris HOM05D005167 ORTHO05D006312 3.1e-39 166.4 380 31.3
VMungo0540G0564 Vigna mungo HOM05D005167 ORTHO05D006312 3.1e-39 166.4 360 33.6
DCAR_029460 Daucus carota HOM05D005167 ORTHO05D006312 4.1e-39 166.0 385 31.4
Gohir.A05G123200 Gossypium hirsutum HOM05D005167 ORTHO05D006312 4.1e-39 166.0 347 32.3
Nitab4.5_0004176g0010 Nicotiana tabacum HOM05D005167 ORTHO05D006312 4.1e-39 166.0 377 33.2
arahy.Tifrunner.gnm1.ann1.JG47X3 Arachis hypogaea HOM05D005167 ORTHO05D006312 5.3e-39 165.6 363 33.1
Os07g0657600 Oryza sativa ssp. japonica HOM05D005167 ORTHO05D006312 5.3e-39 165.6 364 33.8
ATR0782G113 Amborella trichopoda HOM05D005167 ORTHO05D006312 7.0e-39 165.2 383 32.9
Gohir.D05G124100 Gossypium hirsutum HOM05D005167 ORTHO05D006312 7.0e-39 165.2 344 32.6
ECA248G1565 Erigeron canadensis HOM05D005167 ORTHO05D006312 9.1e-39 164.9 371 32.3
Gorai.009G128100 Gossypium raimondii HOM05D005167 ORTHO05D006312 9.1e-39 164.9 351 32.8
Phvul.006G133500 Phaseolus vulgaris HOM05D005167 ORTHO05D006312 9.1e-39 164.9 355 33.2
Solyc01g102670.3 Solanum lycopersicum HOM05D005167 ORTHO05D006312 1.6e-38 164.1 387 33.1
arahy.Tifrunner.gnm1.ann1.T4BBUF Arachis hypogaea HOM05D005167 ORTHO05D006312 2.0e-38 163.7 363 32.8
QL02p104239 Quercus lobata HOM05D005167 ORTHO05D006312 2.6e-38 163.3 369 33.3
CAN.G1379.23 Capsicum annuum HOM05D005167 ORTHO05D006312 3.5e-38 162.9 384 32.8
PGSC0003DMG400018222 Solanum tuberosum HOM05D005167 ORTHO05D006312 4.5e-38 162.5 384 32.0
Glyma.09G018700 Glycine max HOM05D005167 ORTHO05D006312 7.7e-38 161.8 356 33.4
Sopen01g045080 Solanum pennellii HOM05D005167 ORTHO05D006312 7.7e-38 161.8 385 32.5
Lj6g0014124 Lotus japonicus HOM05D005167 ORTHO05D006312 1.3e-37 161.0 371 32.6
BcaC06g36613 Brassica carinata HOM05D005167 ORTHO05D006312 2.9e-37 159.8 192 46.9
Atru.chr6.56 Acer truncatum HOM05D005167 ORTHO05D006312 6.5e-37 158.7 383 31.9
Ciclev10001110m.g Citrus clementina HOM05D005167 ORTHO05D006312 8.5e-37 158.3 373 31.9
CiPaw.09G096800 Carya illinoinensis HOM05D005167 ORTHO05D006312 1.9e-36 157.1 416 31.2
PGR042G3689 Punica granatum HOM05D005167 ORTHO05D006312 4.2e-36 156.0 382 31.4
Nitab4.5_0001085g0040 Nicotiana tabacum HOM05D005167 ORTHO05D006312 9.4e-36 154.8 386 31.3
Peaxi162Scf00194g00934 Petunia axillaris HOM05D005167 ORTHO05D006312 1.2e-35 154.5 394 31.2
CANSAT01G2096 Cannabis sativa HOM05D005167 ORTHO05D006312 1.6e-35 154.1 382 32.5
Manes.18G143000 Manihot esculenta HOM05D005167 ORTHO05D006312 1.0e-34 151.4 289 36.3
TWI31G1352 Tripterygium wilfordii HOM05D005167 ORTHO05D006312 1.0e-34 151.4 199 44.2
Thhalv10028065m.g Eutrema salsugineum HOM05D005167 ORTHO05D006312 1.8e-34 150.6 152 52.0
Gohir.A09G002900 Gossypium hirsutum HOM05D005167 ORTHO05D006312 2.3e-34 150.2 193 46.1
Cc02_g36800 Coffea canephora HOM05D005167 ORTHO05D006312 3.0e-34 149.8 356 31.7
ECA234G3362 Erigeron canadensis HOM05D005167 ORTHO05D006312 5.2e-34 149.1 276 37.0
Gorai.006G003300 Gossypium raimondii HOM05D005167 ORTHO05D006312 5.2e-34 149.1 193 46.1
Manes.06G015900 Manihot esculenta HOM05D005167 ORTHO05D006312 5.2e-34 149.1 390 32.8
TWI23G0323 Tripterygium wilfordii HOM05D005167 ORTHO05D006312 6.7e-34 148.7 396 30.8
A07p01000 Brassica napus HOM05D005167 ORTHO05D006312 1.2e-33 147.9 144 55.6
Potri.003G046300 Populus trichocarpa HOM05D005167 ORTHO05D006312 1.5e-33 147.5 396 30.3
Lju225C0G3 Lonicera japonica HOM05D005167 ORTHO05D006312 9.7e-33 144.8 271 38.4
BcaC06g31947 Brassica carinata HOM05D005167 ORTHO05D006312 3.7e-32 142.9 177 43.5
Rhsim05G0120900 Rhododendron simsii HOM05D005167 ORTHO05D006312 3.7e-32 142.9 392 30.6
Haze_09951 Corylus avellana HOM05D005167 ORTHO05D006312 1.4e-31 141.0 399 29.3
vmacro19812 Vaccinium macrocarpon HOM05D005167 ORTHO05D006312 1.7e-29 134.0 392 30.1
Gohir.D07G228750 Gossypium hirsutum HOM05D005167 ORTHO05D006312 1.9e-28 130.6 279 34.8
Gorai.001G263800 Gossypium raimondii HOM05D005167 ORTHO05D006312 2.1e-27 127.1 275 34.5
THA.LOC104809040 Tarenaya hassleriana HOM05D005167 ORTHO05D006312 3.6e-27 126.3 393 30.5
Sabra03G0019800 Salix brachista HOM05D005167 ORTHO05D006312 4.7e-27 125.9 227 37.4
CDE02G1408 Ceratophyllum demersum HOM05D005167 ORTHO05D006312 3.0e-26 123.2 133 46.6
PGSC0003DMG400040448 Solanum tuberosum HOM05D005167 ORTHO05D006312 2.2e-21 107.1 112 49.1
AUR62024866 Chenopodium quinoa HOM05D005167 ORTHO05D006312 3.2e-20 103.2 294 28.9
BcaC06g31946 Brassica carinata HOM05D005167 ORTHO05D006312 3.6e-19 99.8 178 36.5
QL93p1868_0059 Quercus lobata HOM05D005167 ORTHO05D006312 1.0e-18 98.2 112 44.6
QL01p053234 Quercus lobata HOM05D005167 ORTHO05D006312 1.4e-18 97.8 112 44.6
Eucgr.G00036 Eucalyptus grandis HOM05D005167 ORTHO05D006312 3.0e-18 96.7 327 27.2
QL93p0255_0001 Quercus lobata HOM05D005167 ORTHO05D006312 4.0e-18 96.3 313 28.8
Atru.chr9.63 Acer truncatum HOM05D005167 ORTHO05D006312 4.4e-17 92.8 131 38.9
Atru.chr6.45 Acer truncatum HOM05D005167 ORTHO05D006312 2.4e-15 87.0 164 37.8
SpUn0005_0090 Schrenkiella parvula HOM05D005167 ORTHO05D006312 3.5e-14 83.2 104 40.4
Eucgr.B01611 Eucalyptus grandis HOM05D005167 ORTHO05D006312 1.0e-13 81.6 143 35.7
CDE02G4394 Ceratophyllum demersum HOM05D003845 ORTHO05D004161 2.3e-13 80.5 110 42.7
Oeu000169.3 Olea europaea HOM05D005167 ORTHO05D006312 3.6e-11 73.2 97 43.3
Actinidia01647 Actinidia chinensis HOM05D005167 ORTHO05D006312 4.7e-11 72.8 105 39.0
FvH4_1g27954 Fragaria vesca HOM05D005167 ORTHO05D006312 8.0e-11 72.0 145 36.6
MBI17_g35115_MAGBIO Magnolia biondii HOM05D005167 ORTHO05D006312 1.0e-10 71.6 161 34.2
COL.COLO4_11943 Corchorus olitorius HOM05D005167 ORTHO05D006312 1.8e-10 70.9 117 37.6
Aqoxy4G01501 Aquilegia oxysepala HOM05D005167 ORTHO05D006312 3.0e-10 70.1 131 35.9
Gohir.A12G103850 Gossypium hirsutum HOM05D005167 ORTHO05D006312 3.4e-09 66.6 119 35.3
COL.COLO4_16251 Corchorus olitorius HOM05D005167 ORTHO05D006312 5.7e-09 65.9 219 31.1
QL07p001518 Quercus lobata HOM05D005167 ORTHO05D006312 4.9e-08 62.8 204 26.5


User provided reference genes

Program Settings