Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.L001669 Phaseolus vulgaris HOM05D007582 ORTHO05D009645 2.3e-66 255.4 122 100.0
Phvul.008G160900 Phaseolus vulgaris HOM05D007582 ORTHO05D009645 2.8e-16 89.0 42 100.0
Phvul.008G167875 Phaseolus vulgaris HOM05D007582 ORTHO05D009645 2.8e-16 89.0 42 100.0
VMungo0647G1492 Vigna mungo HOM05D007582 ORTHO05D009645 1.2e-14 83.6 42 92.9
Glyma.14G150500 Glycine max HOM05D007582 ORTHO05D009645 2.1e-11 72.8 43 81.4
Atru.chr13.1488 Acer truncatum HOM05D007582 ORTHO05D009645 3.3e-09 65.5 42 71.4
CAN.G1040.1 Capsicum annuum HOM05D007582 ORTHO05D009645 5.6e-09 64.7 42 69.0
Manes.18G077606 Manihot esculenta HOM05D007582 ORTHO05D009645 5.6e-09 64.7 42 69.0
THA.LOC104817375 Tarenaya hassleriana HOM05D007582 ORTHO05D009645 5.6e-09 64.7 42 71.4
MSTRG.22408 Avicennia marina HOM05D007582 ORTHO05D009645 9.6e-09 63.9 42 69.0
Cc10_g11990 Coffea canephora HOM05D007582 ORTHO05D009645 1.3e-08 63.5 42 66.7
Thhalv10012348m.g Eutrema salsugineum HOM05D007582 ORTHO05D009645 1.3e-08 63.5 42 69.0
PSO528G0093 Papaver somniferum HOM05D007582 ORTHO05D009645 1.3e-08 63.5 42 66.7
BcaB07g33949 Brassica carinata HOM05D007582 ORTHO05D009645 1.6e-08 63.2 42 69.0
BcaC08g42847 Brassica carinata HOM05D007582 ORTHO05D009645 1.6e-08 63.2 42 69.0
A06p11790 Brassica napus HOM05D007582 ORTHO05D009645 1.6e-08 63.2 42 69.0
C06p00630 Brassica napus HOM05D007582 ORTHO05D009645 1.6e-08 63.2 42 69.0
BolC6t35199H Brassica oleracea HOM05D007582 ORTHO05D009645 1.6e-08 63.2 42 69.0
Manes.02G163800 Manihot esculenta HOM05D007582 ORTHO05D009645 1.6e-08 63.2 42 66.7
Peaxi162Scf00051g00105 Petunia axillaris HOM05D007582 ORTHO05D009645 1.6e-08 63.2 42 66.7
Cpa.g.sc64.90 Carica papaya HOM05D007582 ORTHO05D009645 2.1e-08 62.8 42 66.7
Migut.N03282 Erythranthe guttata HOM05D007582 ORTHO05D009645 2.1e-08 62.8 42 66.7
Gohir.A06G045000 Gossypium hirsutum HOM05D007582 ORTHO05D009645 2.1e-08 62.8 42 66.7
Gohir.D06G045500 Gossypium hirsutum HOM05D007582 ORTHO05D009645 2.1e-08 62.8 42 66.7
Gorai.010G050500 Gossypium raimondii HOM05D007582 ORTHO05D009645 2.1e-08 62.8 42 66.7
PSO170G1805 Papaver somniferum HOM05D007582 ORTHO05D009645 2.1e-08 62.8 42 64.3
TWI34G1919 Tripterygium wilfordii HOM05D007582 ORTHO05D009645 2.1e-08 62.8 42 66.7
SHI08583 Sapria himalayana HOM05D007582 ORTHO05D009645 2.8e-08 62.4 43 72.1
CANSAT11G2348 Cannabis sativa HOM05D007582 ORTHO05D009645 3.7e-08 62.0 42 64.3
Duzib116G0545 Durio zibethinus HOM05D007582 ORTHO05D009645 3.7e-08 62.0 42 64.3
SGA_v2.0_scaffold28G11996 Striga asiatica HOM05D007582 ORTHO05D009645 3.7e-08 62.0 42 66.7
TAR381G0802 Trochodendron aralioides HOM05D007582 ORTHO05D009645 3.7e-08 62.0 42 64.3
CAN.G1040.3 Capsicum annuum HOM05D007582 ORTHO05D009645 4.8e-08 61.6 42 66.7
MELO3C010615.2 Cucumis melo HOM05D007582 ORTHO05D009645 4.8e-08 61.6 42 64.3
Oeu028565.1 Olea europaea HOM05D007582 ORTHO05D009645 4.8e-08 61.6 42 64.3
Sp1g33530 Schrenkiella parvula HOM05D007582 ORTHO05D009645 4.8e-08 61.6 42 66.7
Solyc06g060300.1 Solanum lycopersicum HOM05D007582 ORTHO05D009645 4.8e-08 61.6 42 64.3
Sopen06g020420 Solanum pennellii HOM05D007582 ORTHO05D009645 4.8e-08 61.6 42 64.3
AL1G52300 Arabidopsis lyrata HOM05D007582 ORTHO05D009645 6.2e-08 61.2 42 66.7
AT1G44414 Arabidopsis thaliana HOM05D007582 ORTHO05D009645 6.2e-08 61.2 42 66.7
arahy.Tifrunner.gnm1.ann1.WSBZ3R Arachis hypogaea HOM05D007582 ORTHO05D009645 6.2e-08 61.2 42 64.3
Lj4P628T29 Lonicera japonica HOM05D007582 ORTHO05D009645 6.2e-08 61.2 42 64.3
Lalb_Chr17g0343701 Lupinus albus HOM05D007582 ORTHO05D009645 6.2e-08 61.2 42 66.7
PGSC0003DMG400041136 Solanum tuberosum HOM05D007582 ORTHO05D009645 6.2e-08 61.2 42 64.3
Nitab4.5_0003719g0010 Nicotiana tabacum HOM05D007582 ORTHO05D009645 8.1e-08 60.8 42 64.3
Aa31LG6G9350 Aethionema arabicum HOM05D007582 ORTHO05D009645 1.4e-07 60.1 42 66.7
Carub.0001s3518 Capsella rubella HOM05D007582 ORTHO05D009645 1.4e-07 60.1 42 66.7
Lj1g0018777 Lotus japonicus HOM05D007582 ORTHO05D009645 1.4e-07 60.1 42 61.9
Dinv07214 Davidia involucrata HOM05D007582 ORTHO05D009645 1.8e-07 59.7 42 61.9
Potri.002G083100 Populus trichocarpa HOM05D007582 ORTHO05D009645 1.8e-07 59.7 42 61.9
Aa31LG6G9370 Aethionema arabicum HOM05D007582 ORTHO05D009645 2.4e-07 59.3 43 65.1
CARHR035920 Cardamine hirsuta HOM05D007582 ORTHO05D009645 2.4e-07 59.3 42 61.9
Thecc.08G126100 Theobroma cacao HOM05D007582 ORTHO05D009645 2.4e-07 59.3 42 61.9
TPR.G25776 Trifolium pratense HOM05D007582 ORTHO05D009645 3.1e-07 58.9 42 61.9
CSS0038396 Camellia sinensis var. sinensis HOM05D007582 ORTHO05D009645 4.0e-07 58.5 42 61.9
RhsimUnG0092400 Rhododendron simsii HOM05D007582 ORTHO05D009645 4.0e-07 58.5 42 57.1
Medtr1g029990 Medicago truncatula HOM05D007582 ORTHO05D009645 5.3e-07 58.2 42 59.5
PGR042G2864 Punica granatum HOM05D007582 ORTHO05D009645 6.9e-07 57.8 40 62.5
QL09p034466 Quercus lobata HOM05D007582 ORTHO05D009645 6.9e-07 57.8 42 59.5
vmacro00836 Vaccinium macrocarpon HOM05D007582 ORTHO05D009645 6.9e-07 57.8 42 57.1
Aqoxy6G00171 Aquilegia oxysepala HOM05D007582 ORTHO05D009645 9.0e-07 57.4 42 59.5
ClCG08G005690 Citrullus lanatus HOM05D007582 ORTHO05D009645 9.0e-07 57.4 42 59.5
MD15G1347500 Malus domestica HOM05D007582 ORTHO05D009645 1.2e-06 57.0 42 59.5
RcHm_v2.0_Chr6g0295891 Rosa chinensis HOM05D007582 ORTHO05D009645 1.2e-06 57.0 42 59.5
DCAR_016167 Daucus carota HOM05D007582 ORTHO05D009645 2.0e-06 56.2 42 59.5
FAN15G1067 Fragaria x ananassa HOM05D007582 ORTHO05D009645 2.0e-06 56.2 42 57.1
Ciclev10002916m.g Citrus clementina HOM05D007582 ORTHO05D009645 2.6e-06 55.8 40 60.0
Nn3g18690 Nelumbo nucifera HOM05D007582 ORTHO05D009645 2.6e-06 55.8 42 54.8
Sc22g0004000 Simmondsia chinensis HOM05D007582 ORTHO05D009645 2.6e-06 55.8 42 54.8
Nn5g28305 Nelumbo nucifera HOM05D007582 ORTHO05D009645 3.4e-06 55.5 42 54.8
CiPaw.05G221000 Carya illinoinensis HOM05D007582 ORTHO05D009645 4.5e-06 55.1 42 59.5
SalBow6G5334 Salvia bowleyana HOM05D007582 ORTHO05D009645 4.5e-06 55.1 40 62.5
Haze_00435 Corylus avellana HOM05D007582 ORTHO05D009645 5.8e-06 54.7 42 57.1
Nn1g00264 Nelumbo nucifera HOM05D007582 ORTHO05D009645 5.8e-06 54.7 42 54.8
HPP92_006841 Vanilla planifolia HOM05D007582 ORTHO05D009645 7.6e-06 54.3 42 54.8
CDE06G0523 Ceratophyllum demersum HOM05D007582 ORTHO05D009645 1.0e-05 53.9 42 57.1


User provided reference genes

Program Settings