Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.L001639 Phaseolus vulgaris HOM05D003643 ORTHO05D034905 2.9e-60 235.0 111 100.0
Phvul.L008801 Phaseolus vulgaris HOM05D003643 ORTHO05D034905 2.9e-60 235.0 111 100.0
Phvul.003G000226 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 1.7e-52 209.1 99 99.0
Phvul.003G000252 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 1.7e-52 209.1 99 99.0
Phvul.003G000278 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 1.7e-52 209.1 99 99.0
Phvul.L001601 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 1.7e-52 209.1 99 99.0
Phvul.L009001 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 1.7e-52 209.1 99 99.0
VMungo0251G0454 Vigna mungo HOM05D003643 ORTHO05D005001 1.7e-49 199.1 99 94.9
Cfa023544 Carpinus fangiana HOM05D003643 ORTHO05D005001 2.6e-45 185.3 99 84.8
Glyma.20G021900 Glycine max HOM05D003643 ORTHO05D005001 1.3e-44 183.0 96 88.5
PGR083G1065 Punica granatum HOM05D003643 ORTHO05D005001 8.4e-44 180.3 99 83.8
Atru.chr1.1970 Acer truncatum HOM05D003643 ORTHO05D005001 2.4e-43 178.7 94 84.0
Oeu060347.1 Olea europaea HOM05D003643 ORTHO05D005001 3.2e-43 178.3 91 89.0
CiPaw.03G114100 Carya illinoinensis HOM05D003643 ORTHO05D005001 4.2e-43 177.9 99 82.8
Glyma.07G222900 Glycine max HOM05D003643 ORTHO05D005001 2.1e-42 175.6 90 88.9
Lj1g0022937 Lotus japonicus HOM05D003643 ORTHO05D005001 2.1e-42 175.6 99 81.8
Migut.M01969 Erythranthe guttata HOM05D003643 ORTHO05D005001 6.0e-42 174.1 99 81.8
Psat0s5231g0040 Pisum sativum HOM05D003643 ORTHO05D005001 6.0e-42 174.1 99 81.8
Psat6g043080 Pisum sativum HOM05D003643 ORTHO05D005001 6.0e-42 174.1 99 81.8
Sabra04G0050300 Salix brachista HOM05D003643 ORTHO05D005001 6.0e-42 174.1 102 81.4
TPR.G20995 Trifolium pratense HOM05D003643 ORTHO05D005001 6.0e-42 174.1 96 82.3
Lj1g0023481 Lotus japonicus HOM05D003643 ORTHO05D005001 7.8e-42 173.7 99 80.8
MD05G1254800 Malus domestica HOM05D003643 ORTHO05D005001 7.8e-42 173.7 104 78.8
Lj1g0023184 Lotus japonicus HOM05D003643 ORTHO05D005001 1.0e-41 173.3 99 80.8
MD10G1234900 Malus domestica HOM05D003643 ORTHO05D005001 1.0e-41 173.3 104 77.9
Oeu052674.3 Olea europaea HOM05D003643 ORTHO05D005001 5.1e-41 171.0 91 85.7
Ca_18772_v3 Cicer arietinum L. HOM05D003643 ORTHO05D005001 6.6e-41 170.6 102 79.4
SGA_v2.0_scaffold298G47674 Striga asiatica HOM05D003643 ORTHO05D005001 6.6e-41 170.6 90 84.4
EL10Ac5g12673 Beta vulgaris HOM05D003643 ORTHO05D005001 8.7e-41 170.2 101 78.2
unitig_32.g11672 Utricularia gibba HOM05D003643 ORTHO05D005001 8.7e-41 170.2 102 77.5
Cpa.g.sc178.8 Carica papaya HOM05D003643 ORTHO05D005001 1.5e-40 169.5 97 81.4
Dinv35809 Davidia involucrata HOM05D003643 ORTHO05D005001 1.9e-40 169.1 92 83.7
Potri.004G075600 Populus trichocarpa HOM05D003643 ORTHO05D005001 2.5e-40 168.7 102 79.4
Prupe.4G109100 Prunus persica HOM05D003643 ORTHO05D005001 2.5e-40 168.7 92 81.5
Medtr4g083780 Medicago truncatula HOM05D003643 ORTHO05D005001 3.3e-40 168.3 96 81.2
TWI77G0757 Tripterygium wilfordii HOM05D003643 ORTHO05D005001 4.3e-40 167.9 98 79.6
Sc22g0000430 Simmondsia chinensis HOM05D003643 ORTHO05D005001 1.3e-39 166.4 98 79.6
Lsat_1_v5_gn_5_36401 Lactuca sativa HOM05D003643 ORTHO05D005001 2.1e-39 165.6 89 85.4
SalBow8G4557 Salvia bowleyana HOM05D003643 ORTHO05D005001 2.1e-39 165.6 91 82.4
SalBow8G5428 Salvia bowleyana HOM05D003643 ORTHO05D005001 2.1e-39 165.6 91 82.4
Hund14697 Selenicereus undatus HOM05D003643 ORTHO05D005001 2.1e-39 165.6 95 76.8
Lj1C1143T1 Lonicera japonica HOM05D003643 ORTHO05D005001 4.8e-39 164.5 92 80.4
Hund01937 Selenicereus undatus HOM05D003643 ORTHO05D005001 8.1e-39 163.7 92 78.3
SGA_v2.0_scaffold95G28766 Striga asiatica HOM05D003643 ORTHO05D005001 1.1e-38 163.3 91 81.3
Lalb_Chr16g0385301 Lupinus albus HOM05D003643 ORTHO05D005001 1.8e-38 162.5 100 77.0
CSS0044821 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D005001 2.4e-38 162.2 99 76.8
Actinidia22386 Actinidia chinensis HOM05D003643 ORTHO05D005001 3.1e-38 161.8 99 78.8
Sed0017297 Sechium edule HOM05D003643 ORTHO05D005001 3.1e-38 161.8 94 78.7
THA.LOC104822105 Tarenaya hassleriana HOM05D003643 ORTHO05D005001 4.0e-38 161.4 90 78.9
BcaB01g04707 Brassica carinata HOM05D003643 ORTHO05D005001 5.3e-38 161.0 95 75.8
Eucgr.D01040 Eucalyptus grandis HOM05D003643 ORTHO05D005001 6.9e-38 160.6 101 73.3
Sp6g22770 Schrenkiella parvula HOM05D003643 ORTHO05D005001 6.9e-38 160.6 94 77.7
RcHm_v2.0_Chr5g0019781 Rosa chinensis HOM05D003643 ORTHO05D005001 9.0e-38 160.2 97 76.3
FAN16G1159 Fragaria x ananassa HOM05D003643 ORTHO05D005001 1.2e-37 159.8 97 77.3
Nitab4.5_0002056g0030 Nicotiana tabacum HOM05D003643 ORTHO05D005001 1.2e-37 159.8 96 78.1
CsaV3_1G046560 Cucumis sativus L. HOM05D003643 ORTHO05D005001 1.5e-37 159.5 95 76.8
Carub.0006s2022 Capsella rubella HOM05D003643 ORTHO05D005001 2.0e-37 159.1 100 75.0
FvH4_3g12070 Fragaria vesca HOM05D003643 ORTHO05D005001 2.0e-37 159.1 97 76.3
FAN21G1938 Fragaria x ananassa HOM05D003643 ORTHO05D005001 2.0e-37 159.1 97 76.3
FAN25G0143 Fragaria x ananassa HOM05D003643 ORTHO05D005001 2.0e-37 159.1 97 76.3
HanXRQChr07g0189641 Helianthus annuus HOM05D003643 ORTHO05D005001 2.0e-37 159.1 89 79.8
TAR365G0076 Trochodendron aralioides HOM05D003643 ORTHO05D005001 2.0e-37 159.1 93 78.5
CAN.G1222.6 Capsicum annuum HOM05D003643 ORTHO05D005001 4.5e-37 157.9 99 75.8
Solyc02g069120.3 Solanum lycopersicum HOM05D003643 ORTHO05D005001 4.5e-37 157.9 99 75.8
Sopen02g018250 Solanum pennellii HOM05D003643 ORTHO05D005001 4.5e-37 157.9 99 75.8
Aa31LG9G17620 Aethionema arabicum HOM05D003643 ORTHO05D005001 5.8e-37 157.5 93 77.4
BolC8t48076H Brassica oleracea HOM05D003643 ORTHO05D005001 5.8e-37 157.5 94 76.6
CARHR191050 Cardamine hirsuta HOM05D003643 ORTHO05D005001 5.8e-37 157.5 93 77.4
MELO3C021772.2 Cucumis melo HOM05D003643 ORTHO05D005001 7.6e-37 157.1 95 75.8
PGSC0003DMG400010363 Solanum tuberosum HOM05D003643 ORTHO05D005001 7.6e-37 157.1 99 75.8
AT5G22480 Arabidopsis thaliana HOM05D003643 ORTHO05D005001 9.9e-37 156.8 95 75.8
BraA03t10388Z Brassica rapa HOM05D003643 ORTHO05D005001 9.9e-37 156.8 93 75.3
BraA08t33014Z Brassica rapa HOM05D003643 ORTHO05D005001 9.9e-37 156.8 94 76.6
ClCG01G009350 Citrullus lanatus HOM05D003643 ORTHO05D005001 9.9e-37 156.8 94 76.6
AT5G37340 Arabidopsis thaliana HOM05D003643 ORTHO05D005001 1.3e-36 156.4 93 77.4
CARHR215770 Cardamine hirsuta HOM05D003643 ORTHO05D005001 1.3e-36 156.4 93 77.4
BcaC07g37705 Brassica carinata HOM05D003643 ORTHO05D005001 1.7e-36 156.0 94 75.5
vmacro11251 Vaccinium macrocarpon HOM05D003643 ORTHO05D005001 1.7e-36 156.0 100 75.0
CANSAT21G2447 Cannabis sativa HOM05D003643 ORTHO05D005001 2.2e-36 155.6 92 76.1
Thhalv10013358m.g Eutrema salsugineum HOM05D003643 ORTHO05D005001 2.2e-36 155.6 94 75.5
Nitab4.5_0002463g0030 Nicotiana tabacum HOM05D003643 ORTHO05D005001 2.2e-36 155.6 96 77.1
HanXRQChr14g0433091 Helianthus annuus HOM05D003643 ORTHO05D005001 2.9e-36 155.2 90 78.9
Thecc.04G162500 Theobroma cacao HOM05D003643 ORTHO05D005001 3.8e-36 154.8 100 74.0
GSVIVG01012096001 Vitis vinifera HOM05D003643 ORTHO05D005001 3.8e-36 154.8 92 75.0
A08p10150 Brassica napus HOM05D003643 ORTHO05D005001 4.9e-36 154.5 94 75.5
Thhalv10027733m.g Eutrema salsugineum HOM05D003643 ORTHO05D005001 4.9e-36 154.5 94 76.6
AL6G33500 Arabidopsis lyrata HOM05D003643 ORTHO05D005001 8.4e-36 153.7 94 75.5
BcaC04g19578 Brassica carinata HOM05D003643 ORTHO05D005001 8.4e-36 153.7 93 75.3
A03p10790 Brassica napus HOM05D003643 ORTHO05D005001 8.4e-36 153.7 93 74.2
AL7G45920 Arabidopsis lyrata HOM05D003643 ORTHO05D005001 1.1e-35 153.3 94 74.5
C03p12370 Brassica napus HOM05D003643 ORTHO05D005001 1.1e-35 153.3 93 74.2
C09p54110 Brassica napus HOM05D003643 ORTHO05D005001 1.1e-35 153.3 93 74.2
BolC3t13712H Brassica oleracea HOM05D003643 ORTHO05D005001 1.1e-35 153.3 93 74.2
BolC9t58281H Brassica oleracea HOM05D003643 ORTHO05D005001 1.1e-35 153.3 93 74.2
Cc09_g06330 Coffea canephora HOM05D003643 ORTHO05D005001 1.1e-35 153.3 103 73.8
Gohir.1Z049309 Gossypium hirsutum HOM05D003643 ORTHO05D005001 1.1e-35 153.3 100 73.0
Gohir.1Z049318 Gossypium hirsutum HOM05D003643 ORTHO05D005001 1.1e-35 153.3 100 73.0
A10p18340 Brassica napus HOM05D003643 ORTHO05D005001 2.4e-35 152.1 93 73.1
BraA10t43914Z Brassica rapa HOM05D003643 ORTHO05D005001 2.4e-35 152.1 93 73.1
Gohir.D10G121400 Gossypium hirsutum HOM05D003643 ORTHO05D005001 2.4e-35 152.1 100 73.0
Gorai.011G133500 Gossypium raimondii HOM05D003643 ORTHO05D005001 2.4e-35 152.1 100 73.0
BcaB04g18097 Brassica carinata HOM05D003643 ORTHO05D005001 3.2e-35 151.8 93 75.3
BcaC01g06578 Brassica carinata HOM05D003643 ORTHO05D005001 5.4e-35 151.0 93 73.1
Duzib268G1178 Durio zibethinus HOM05D003643 ORTHO05D005001 5.4e-35 151.0 102 70.6
AUR62017342 Chenopodium quinoa HOM05D003643 ORTHO05D005001 2.1e-34 149.1 95 71.6
AUR62010551 Chenopodium quinoa HOM05D003643 ORTHO05D005001 2.7e-34 148.7 99 70.7
SpUn0005_0160 Schrenkiella parvula HOM05D003643 ORTHO05D005001 2.7e-34 148.7 93 75.3
CDE02G0779 Ceratophyllum demersum HOM05D003643 ORTHO05D005001 6.0e-34 147.5 91 70.3
DCAR_007797 Daucus carota HOM05D003643 ORTHO05D005001 1.3e-33 146.4 96 69.8
Peaxi162Scf00128g01142 Petunia axillaris HOM05D003643 ORTHO05D005001 1.3e-33 146.4 93 73.1
ECA238G3555 Erigeron canadensis HOM05D003643 ORTHO05D005001 3.0e-33 145.2 97 68.0
Zm00001eb058120 Zea mays HOM05D003643 ORTHO05D005001 3.0e-33 145.2 92 65.2
Nn7g37591 Nelumbo nucifera HOM05D003643 ORTHO05D005001 3.9e-33 144.8 93 71.0
Pp3c15_5070 Physcomitrium patens HOM05D003643 ORTHO05D005001 3.9e-33 144.8 93 66.7
BcaB08g36427 Brassica carinata HOM05D003643 ORTHO05D005001 6.7e-33 144.1 103 68.0
arahy.Tifrunner.gnm1.ann1.EU78CH Arachis hypogaea HOM05D003643 ORTHO05D005001 2.5e-32 142.1 97 69.1
Phvul.003G000330 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 3.3e-32 141.7 63 98.4
arahy.Tifrunner.gnm1.ann1.PVMC8E Arachis hypogaea HOM05D003643 ORTHO05D005001 7.4e-32 140.6 97 68.0
COL.COLO4_08070 Corchorus olitorius HOM05D003643 ORTHO05D005001 1.3e-31 139.8 101 66.3
ATR0743G136 Amborella trichopoda HOM05D003643 ORTHO05D005001 1.6e-31 139.4 93 67.7
Mapoly0085s0072 Marchantia polymorpha HOM05D003643 ORTHO05D005001 8.1e-31 137.1 94 60.6
Rhsim04G0157300 Rhododendron simsii HOM05D003643 ORTHO05D005001 8.1e-31 137.1 126 58.7
Os08g0471900 Oryza sativa ssp. japonica HOM05D003643 ORTHO05D005001 1.5e-29 132.9 73 68.5
PSO675G9021 Papaver somniferum HOM05D003643 ORTHO05D005001 1.5e-29 132.9 91 65.9
Aqoxy5G01635 Aquilegia oxysepala HOM05D003643 ORTHO05D005001 3.4e-29 131.7 98 61.2
HPP92_015903 Vanilla planifolia HOM05D003643 ORTHO05D005001 9.9e-29 130.2 93 59.1
TPR.G20778 Trifolium pratense HOM05D003643 ORTHO05D005001 3.8e-28 128.3 95 63.2
Ca_20206_v3 Cicer arietinum L. HOM05D003643 ORTHO05D005001 4.2e-27 124.8 92 63.0
Haze_13619 Corylus avellana HOM05D003643 ORTHO05D034905 4.2e-27 124.8 105 62.9
ECA246G0187 Erigeron canadensis HOM05D003643 ORTHO05D005001 1.6e-26 122.9 101 62.4
Peaxi162Scf00149g01022 Petunia axillaris HOM05D003643 ORTHO05D005001 1.6e-26 122.9 91 65.9
SMO203G0021 Selaginella moellendorffii HOM05D003643 ORTHO05D005001 1.5e-24 116.3 69 69.6
CBR_g6566 Chara braunii HOM05D003643 ORTHO05D005001 3.3e-24 115.2 68 69.1
MBI07_g18519_MAGBIO Magnolia biondii HOM05D003643 ORTHO05D005001 5.6e-24 114.4 95 57.9
TPR.G9485 Trifolium pratense HOM05D003643 ORTHO05D005001 1.9e-19 99.4 69 62.3
CBR_g34896 Chara braunii HOM05D003643 ORTHO05D005001 1.2e-18 96.7 59 66.1
Psat3g171960 Pisum sativum HOM05D003643 ORTHO05D005001 1.5e-16 89.7 46 78.3
Psat6g162200 Pisum sativum HOM05D003643 ORTHO05D005001 1.5e-16 89.7 46 78.3
Lsat_1_v5_gn_2_29841 Lactuca sativa HOM05D003643 ORTHO05D005001 1.9e-16 89.4 99 48.5
Cfa025656 Carpinus fangiana HOM05D003643 ORTHO05D005001 1.6e-15 86.3 73 50.7
Nitab4.5_0004569g0010 Nicotiana tabacum HOM05D003643 ORTHO05D005001 9.0e-14 80.5 85 54.1
Manes.01G122000 Manihot esculenta HOM05D003643 ORTHO05D005001 1.9e-08 62.8 75 46.7
Cc11_g00920 Coffea canephora HOM05D003643 ORTHO05D005001 3.1e-06 55.5 32 68.8
Lsat_1_v5_gn_5_36361 Lactuca sativa HOM05D003643 ORTHO05D018815 9.1e-06 53.9 32 78.1


User provided reference genes

Program Settings