Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.L001638 Phaseolus vulgaris HOM05D004614 ORTHO05D005339 3.4e-48 194.5 87 100.0
Phvul.009G010200 Phaseolus vulgaris HOM05D004614 ORTHO05D005339 8.3e-31 136.7 64 98.4
Glyma.04G018400 Glycine max HOM05D004614 ORTHO05D005339 4.6e-29 131.0 63 95.2
Glyma.06G018700 Glycine max HOM05D004614 ORTHO05D005339 1.3e-28 129.4 63 93.7
Lj1g0005022 Lotus japonicus HOM05D004614 ORTHO05D005339 1.3e-28 129.4 63 93.7
Psat5g011520 Pisum sativum HOM05D004614 ORTHO05D005339 2.3e-28 128.6 65 90.8
Ca_15438_v3 Cicer arietinum L. HOM05D004614 ORTHO05D005339 3.0e-28 128.3 63 92.1
VMungo1309G2703 Vigna mungo HOM05D004614 ORTHO05D005339 5.1e-28 127.5 61 96.7
SGA_v2.0_scaffold275G46591 Striga asiatica HOM05D004614 ORTHO05D005339 6.6e-28 127.1 62 91.9
TPR.G38127 Trifolium pratense HOM05D004614 ORTHO05D005339 6.6e-28 127.1 63 92.1
MD11G1103700 Malus domestica HOM05D004614 ORTHO05D005339 2.5e-27 125.2 71 81.7
Lj4A12T78 Lonicera japonica HOM05D004614 ORTHO05D005339 4.3e-27 124.4 62 90.3
CiPaw.07G139400 Carya illinoinensis HOM05D004614 ORTHO05D005339 7.3e-27 123.6 62 90.3
Manes.05G134900 Manihot esculenta HOM05D004614 ORTHO05D005339 7.3e-27 123.6 62 90.3
QL02p013984 Quercus lobata HOM05D004614 ORTHO05D005339 7.3e-27 123.6 62 90.3
CANSAT25G1550 Cannabis sativa HOM05D004614 ORTHO05D005339 1.2e-26 122.9 61 91.8
Lj4A805T24 Lonicera japonica HOM05D004614 ORTHO05D005339 1.2e-26 122.9 62 88.7
COL.COLO4_04001 Corchorus olitorius HOM05D004614 ORTHO05D005339 1.6e-26 122.5 62 88.7
Cc10_g00730 Coffea canephora HOM05D004614 ORTHO05D005339 2.1e-26 122.1 61 90.2
Migut.C00954 Erythranthe guttata HOM05D004614 ORTHO05D005339 2.8e-26 121.7 64 87.5
Eucgr.F03550 Eucalyptus grandis HOM05D004614 ORTHO05D005339 2.8e-26 121.7 62 88.7
PGR031G0851 Punica granatum HOM05D004614 ORTHO05D005339 2.8e-26 121.7 62 90.3
THA.LOC104813167 Tarenaya hassleriana HOM05D004614 ORTHO05D005339 2.8e-26 121.7 61 90.2
Actinidia29786 Actinidia chinensis HOM05D004614 ORTHO05D005339 3.6e-26 121.3 62 88.7
Cfa014064 Carpinus fangiana HOM05D004614 ORTHO05D005339 3.6e-26 121.3 62 88.7
Cpa.g.sc26.206 Carica papaya HOM05D004614 ORTHO05D005339 4.7e-26 120.9 62 88.7
Medtr3g115210 Medicago truncatula HOM05D004614 ORTHO05D005339 4.7e-26 120.9 63 88.9
Rhsim07G0254700 Rhododendron simsii HOM05D004614 ORTHO05D005339 4.7e-26 120.9 62 88.7
vmacro04401 Vaccinium macrocarpon HOM05D004614 ORTHO05D005339 4.7e-26 120.9 62 90.3
Actinidia37970 Actinidia chinensis HOM05D004614 ORTHO05D005339 6.2e-26 120.6 62 88.7
AL1G51310 Arabidopsis lyrata HOM05D004614 ORTHO05D005339 6.2e-26 120.6 61 88.5
AT1G42430 Arabidopsis thaliana HOM05D004614 ORTHO05D005339 6.2e-26 120.6 61 88.5
BcaB04g17805 Brassica carinata HOM05D004614 ORTHO05D005339 6.2e-26 120.6 61 88.5
BcaC07g37479 Brassica carinata HOM05D004614 ORTHO05D005339 6.2e-26 120.6 61 88.5
A08p07800 Brassica napus HOM05D004614 ORTHO05D005339 6.2e-26 120.6 61 88.5
C08p09450 Brassica napus HOM05D004614 ORTHO05D005339 6.2e-26 120.6 61 88.5
BolC8t47801H Brassica oleracea HOM05D004614 ORTHO05D005339 6.2e-26 120.6 61 88.5
BraA08t32800Z Brassica rapa HOM05D004614 ORTHO05D005339 6.2e-26 120.6 61 88.5
Carub.0001s3422 Capsella rubella HOM05D004614 ORTHO05D005339 6.2e-26 120.6 61 88.5
CARHR292380 Cardamine hirsuta HOM05D004614 ORTHO05D005339 6.2e-26 120.6 61 88.5
ClCG08G009480 Citrullus lanatus HOM05D004614 ORTHO05D005339 6.2e-26 120.6 62 88.7
Ciclev10001231m.g Citrus clementina HOM05D004614 ORTHO05D005339 6.2e-26 120.6 61 88.5
MELO3C026543.2 Cucumis melo HOM05D004614 ORTHO05D005339 6.2e-26 120.6 62 88.7
CsaV3_6G031620 Cucumis sativus L. HOM05D004614 ORTHO05D005339 6.2e-26 120.6 62 88.7
DCAR_016768 Daucus carota HOM05D004614 ORTHO05D005339 6.2e-26 120.6 62 87.1
Hma1.2p1_0507F.1_g168400 Hydrangea macrophylla HOM05D004614 ORTHO05D005339 6.2e-26 120.6 62 87.1
Peaxi162Scf00064g01132 Petunia axillaris HOM05D004614 ORTHO05D005339 6.2e-26 120.6 65 81.5
Prupe.1G354900 Prunus persica HOM05D004614 ORTHO05D005339 6.2e-26 120.6 62 87.1
Sp1g32010 Schrenkiella parvula HOM05D004614 ORTHO05D005339 6.2e-26 120.6 61 88.5
Thecc.08G058000 Theobroma cacao HOM05D004614 ORTHO05D005339 6.2e-26 120.6 62 87.1
TWI56G0787 Tripterygium wilfordii HOM05D004614 ORTHO05D005339 6.2e-26 120.6 62 88.7
Aa31LG8G13830 Aethionema arabicum HOM05D004614 ORTHO05D005339 8.1e-26 120.2 61 88.5
Dinv25909 Davidia involucrata HOM05D004614 ORTHO05D005339 8.1e-26 120.2 62 83.9
unitig_82.g27116 Utricularia gibba HOM05D004614 ORTHO05D005339 8.1e-26 120.2 62 87.1
GSVIVG01008677001 Vitis vinifera HOM05D004614 ORTHO05D005339 8.1e-26 120.2 62 87.1
Nn5g30931 Nelumbo nucifera HOM05D004614 ORTHO05D005339 1.1e-25 119.8 63 84.1
ECA232G3530 Erigeron canadensis HOM05D004614 ORTHO05D005339 1.4e-25 119.4 63 87.3
Potri.002G011300 Populus trichocarpa HOM05D004614 ORTHO05D005339 1.4e-25 119.4 62 87.1
Potri.005G249700 Populus trichocarpa HOM05D004614 ORTHO05D005339 1.4e-25 119.4 61 88.5
vmacro21824 Vaccinium macrocarpon HOM05D004614 ORTHO05D005339 1.4e-25 119.4 62 87.1
MD08G1002900 Malus domestica HOM05D004614 ORTHO05D005339 1.8e-25 119.0 62 87.1
MD15G1002600 Malus domestica HOM05D004614 ORTHO05D005339 1.8e-25 119.0 62 87.1
Oeu056211.1 Olea europaea HOM05D004614 ORTHO05D005339 1.8e-25 119.0 62 85.5
Duzib116G0199 Durio zibethinus HOM05D004614 ORTHO05D005339 2.3e-25 118.6 62 85.5
HanXRQChr05g0146811 Helianthus annuus HOM05D004614 ORTHO05D005339 2.3e-25 118.6 62 85.5
CAN.G311.111 Capsicum annuum HOM05D004614 ORTHO05D005339 3.1e-25 118.2 61 88.5
Gohir.A05G179800 Gossypium hirsutum HOM05D004614 ORTHO05D005339 3.1e-25 118.2 62 85.5
Gorai.009G188200 Gossypium raimondii HOM05D004614 ORTHO05D005339 3.1e-25 118.2 62 85.5
Os03g0133300 Oryza sativa ssp. japonica HOM05D004614 ORTHO05D005339 3.1e-25 118.2 62 85.5
ATR0661G410 Amborella trichopoda HOM05D004614 ORTHO05D005339 4.0e-25 117.9 62 85.5
Aqoxy6G01739 Aquilegia oxysepala HOM05D004614 ORTHO05D005339 4.0e-25 117.9 80 71.2
Duzib041G0192 Durio zibethinus HOM05D004614 ORTHO05D005339 4.0e-25 117.9 62 85.5
Duzib093G0152 Durio zibethinus HOM05D004614 ORTHO05D005339 4.0e-25 117.9 62 85.5
Sed0024410 Sechium edule HOM05D004614 ORTHO05D005339 5.2e-25 117.5 62 85.5
Solyc12g094570.1 Solanum lycopersicum HOM05D004614 ORTHO05D005339 5.2e-25 117.5 62 83.9
Sopen12g031480 Solanum pennellii HOM05D004614 ORTHO05D005339 5.2e-25 117.5 62 83.9
PGSC0003DMG400029318 Solanum tuberosum HOM05D004614 ORTHO05D005339 5.2e-25 117.5 62 83.9
Nn6g31744 Nelumbo nucifera HOM05D004614 ORTHO05D005339 6.8e-25 117.1 61 85.2
Gorai.002G118400 Gossypium raimondii HOM05D004614 ORTHO05D005339 1.2e-24 116.3 62 82.3
PGSC0003DMG400009975 Solanum tuberosum HOM05D004614 ORTHO05D005339 1.2e-24 116.3 64 82.8
Thhalv10004272m.g Eutrema salsugineum HOM05D004614 ORTHO05D005339 2.6e-24 115.2 61 85.2
Lalb_Chr11g0061661 Lupinus albus HOM05D004614 ORTHO05D005339 2.6e-24 115.2 62 85.5
HPP92_020707 Vanilla planifolia HOM05D004614 ORTHO05D005339 3.4e-24 114.8 62 82.3
Solyc04g082290.4 Solanum lycopersicum HOM05D004614 ORTHO05D005339 4.4e-24 114.4 64 81.2
Sopen04g035910 Solanum pennellii HOM05D004614 ORTHO05D005339 4.4e-24 114.4 64 81.2
TWI36G0356 Tripterygium wilfordii HOM05D004614 ORTHO05D005339 4.4e-24 114.4 62 85.5
Peaxi162Scf00893g00434 Petunia axillaris HOM05D004614 ORTHO05D005339 5.8e-24 114.0 64 85.9
CiPaw.08G072400 Carya illinoinensis HOM05D004614 ORTHO05D005339 9.9e-24 113.2 62 80.6
RcHm_v2.0_Chr6g0304201 Rosa chinensis HOM05D004614 ORTHO05D005339 9.9e-24 113.2 60 86.7
Sabra05G0193200 Salix brachista HOM05D004614 ORTHO05D005339 9.9e-24 113.2 62 83.9
Gohir.A01G106500 Gossypium hirsutum HOM05D004614 ORTHO05D005339 1.3e-23 112.8 62 80.6
Gohir.D01G093000 Gossypium hirsutum HOM05D004614 ORTHO05D005339 1.7e-23 112.5 62 79.0
TAR625G0334 Trochodendron aralioides HOM05D004614 ORTHO05D005339 1.7e-23 112.5 60 81.7
Lsat_1_v5_gn_2_6461 Lactuca sativa HOM05D004614 ORTHO05D005339 2.2e-23 112.1 62 82.3
Lsat_1_v5_gn_9_45021 Lactuca sativa HOM05D004614 ORTHO05D005339 2.2e-23 112.1 64 81.2
TAR376G0430 Trochodendron aralioides HOM05D004614 ORTHO05D005339 2.2e-23 112.1 61 80.3
CSS0048285 Camellia sinensis var. sinensis HOM05D004614 ORTHO05D005339 3.7e-23 111.3 62 83.9
Sc15g0004500 Simmondsia chinensis HOM05D004614 ORTHO05D005339 3.7e-23 111.3 57 89.5
EL10Ac1g01976 Beta vulgaris HOM05D004614 ORTHO05D005339 4.9e-23 110.9 57 89.5
SEGI_03937 Sequoiadendron giganteum HOM05D004614 ORTHO05D005339 4.9e-23 110.9 62 79.0
Ah.00g000370 Amaranthus hybridus HOM05D004614 ORTHO05D005339 8.3e-23 110.2 57 87.7
Hund01763 Selenicereus undatus HOM05D004614 ORTHO05D005339 1.1e-22 109.8 57 87.7
HanXRQChr14g0428261 Helianthus annuus HOM05D004614 ORTHO05D005339 3.2e-22 108.2 62 77.4
AUR62036884 Chenopodium quinoa HOM05D004614 ORTHO05D005339 2.7e-21 105.1 57 84.2
FvH4_2g37530 Fragaria vesca HOM05D004614 ORTHO05D005339 4.6e-21 104.4 63 76.2
FAN15G3067 Fragaria x ananassa HOM05D004614 ORTHO05D005339 4.6e-21 104.4 63 76.2
FAN20G3039 Fragaria x ananassa HOM05D004614 ORTHO05D005339 4.6e-21 104.4 63 76.2
FAN27G1062 Fragaria x ananassa HOM05D004614 ORTHO05D005339 4.6e-21 104.4 63 76.2
unitig_748.g7709 Utricularia gibba HOM05D004614 ORTHO05D005339 2.3e-20 102.1 63 76.2
PSO541G0908 Papaver somniferum HOM05D004614 ORTHO05D005339 5.1e-20 100.9 58 75.9
PSO675G0524 Papaver somniferum HOM05D004614 ORTHO05D005339 5.1e-20 100.9 58 75.9
Pp3c7_400 Physcomitrium patens HOM05D004614 ORTHO05D005339 1.9e-19 99.0 59 71.2
CDE02G2145 Ceratophyllum demersum HOM05D004614 ORTHO05D005339 9.5e-19 96.7 51 86.3
Mapoly0189s0007 Marchantia polymorpha HOM05D004614 ORTHO05D005339 2.1e-18 95.5 61 68.9
Nitab4.5_0000699g0050 Nicotiana tabacum HOM05D004614 ORTHO05D005339 4.7e-18 94.4 62 69.4
Pp3c11_25930 Physcomitrium patens HOM05D004614 ORTHO05D005339 1.1e-17 93.2 59 66.1
SMO169G0316 Selaginella moellendorffii HOM05D004614 ORTHO05D005339 5.2e-17 90.9 58 69.0
Nitab4.5_0010763g0030 Nicotiana tabacum HOM05D004614 ORTHO05D005339 1.2e-13 79.7 70 58.6
PGSC0003DMG400033656 Solanum tuberosum HOM05D004614 ORTHO05D005339 1.0e-12 76.6 47 76.6
arahy.Tifrunner.gnm1.ann1.7DZ9XI Arachis hypogaea HOM05D004614 ORTHO05D005339 1.1e-11 73.2 38 84.2
arahy.Tifrunner.gnm1.ann1.MYP9FH Arachis hypogaea HOM05D004614 ORTHO05D005339 5.6e-11 70.9 38 81.6
Rhsim06G0008000 Rhododendron simsii HOM05D004614 ORTHO05D005339 5.6e-11 70.9 65 55.4
MD07G1011800 Malus domestica HOM05D004614 ORTHO05D005339 9.6e-11 70.1 31 96.8
Peaxi162Scf00447g00052 Petunia axillaris HOM05D004614 ORTHO05D005339 1.3e-10 69.7 47 66.0
Hund05117 Selenicereus undatus HOM05D004614 ORTHO05D005339 9.0e-09 63.5 32 87.5
Nitab4.5_0000588g0160 Nicotiana tabacum HOM05D004614 ORTHO05D005339 1.2e-08 63.2 61 54.1
TAR381G0464 Trochodendron aralioides HOM05D004614 ORTHO05D005339 3.8e-07 58.2 25 100.0
CSS0044612 Camellia sinensis var. sinensis HOM05D004614 ORTHO05D005339 1.9e-06 55.8 25 96.0
Manes.18G005900 Manihot esculenta HOM05D004614 ORTHO05D005339 1.9e-06 55.8 25 96.0
HanXRQChr15g0492731 Helianthus annuus HOM05D004614 ORTHO05D005339 7.1e-06 53.9 25 92.0


User provided reference genes

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