Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.L001633 Phaseolus vulgaris HOM05D008272 ORTHO05D010429 2.5e-62 241.9 119 100.0
VMungo0647G0594 Vigna mungo HOM05D008272 ORTHO05D010429 8.1e-53 210.3 118 85.6
QL08p010511 Quercus lobata HOM05D008272 ORTHO05D010429 2.6e-51 205.3 117 81.2
Lalb_Chr17g0348421 Lupinus albus HOM05D008272 ORTHO05D010429 4.9e-50 201.1 118 80.5
CiPaw.11G188800 Carya illinoinensis HOM05D008272 ORTHO05D010429 1.4e-49 199.5 115 80.0
Cpa.g.sc97.8 Carica papaya HOM05D008272 ORTHO05D010429 5.4e-49 197.6 115 78.3
COL.COLO4_09657 Corchorus olitorius HOM05D008272 ORTHO05D010429 9.3e-49 196.8 114 78.9
ATR0752G027 Amborella trichopoda HOM05D008272 ORTHO05D010429 1.2e-48 196.4 116 80.2
CiPaw.12G129300 Carya illinoinensis HOM05D008272 ORTHO05D010429 2.7e-48 195.3 116 78.4
arahy.Tifrunner.gnm1.ann1.MV6CSW Arachis hypogaea HOM05D008272 ORTHO05D010429 4.6e-48 194.5 116 79.3
arahy.Tifrunner.gnm1.ann1.UDA7AK Arachis hypogaea HOM05D008272 ORTHO05D010429 4.6e-48 194.5 116 79.3
ClCG10G005430 Citrullus lanatus HOM05D008272 ORTHO05D010429 6.0e-48 194.1 117 77.8
Hund23252 Selenicereus undatus HOM05D008272 ORTHO05D010429 7.9e-48 193.7 115 78.3
Gohir.D01G066300 Gossypium hirsutum HOM05D008272 ORTHO05D010429 1.3e-47 193.0 115 73.9
Eucgr.F03464 Eucalyptus grandis HOM05D008272 ORTHO05D010429 1.7e-47 192.6 115 78.3
Gohir.A01G079200 Gossypium hirsutum HOM05D008272 ORTHO05D010429 2.3e-47 192.2 116 74.1
Thecc.07G038600 Theobroma cacao HOM05D008272 ORTHO05D010429 2.3e-47 192.2 115 75.7
Gorai.002G088200 Gossypium raimondii HOM05D008272 ORTHO05D010429 3.9e-47 191.4 115 73.9
GSVIVG01037640001 Vitis vinifera HOM05D008272 ORTHO05D010429 3.9e-47 191.4 116 75.9
Ciclev10008983m.g Citrus clementina HOM05D008272 ORTHO05D010429 8.7e-47 190.3 115 73.9
CsaV3_3G005170 Cucumis sativus L. HOM05D008272 ORTHO05D010429 1.1e-46 189.9 116 75.9
MELO3C025383.2 Cucumis melo HOM05D008272 ORTHO05D010429 1.5e-46 189.5 116 76.7
Duzib170G0415 Durio zibethinus HOM05D008272 ORTHO05D010429 1.5e-46 189.5 115 74.8
Thecc.07G038700 Theobroma cacao HOM05D008272 ORTHO05D010429 1.9e-46 189.1 115 75.7
Migut.M01769 Erythranthe guttata HOM05D008272 ORTHO05D010429 3.3e-46 188.3 115 74.8
Potri.011G138900 Populus trichocarpa HOM05D008272 ORTHO05D010429 3.3e-46 188.3 116 75.9
Hma1.2p1_1162F.1_g262620 Hydrangea macrophylla HOM05D008272 ORTHO05D010429 7.3e-46 187.2 116 73.3
Manes.15G072400 Manihot esculenta HOM05D008272 ORTHO05D010429 9.6e-46 186.8 116 76.7
Hund01995 Selenicereus undatus HOM05D008272 ORTHO05D010429 2.8e-45 185.3 115 74.8
EL10Ac4g07813 Beta vulgaris HOM05D008272 ORTHO05D010429 6.2e-45 184.1 116 71.6
RcHm_v2.0_Chr5g0039361 Rosa chinensis HOM05D008272 ORTHO05D010429 8.1e-45 183.7 116 74.1
HPP92_011139 Vanilla planifolia HOM05D008272 ORTHO05D010429 4.0e-44 181.4 116 75.0
PGR083G1743 Punica granatum HOM05D008272 ORTHO05D010429 2.6e-43 178.7 115 71.3
Os04g0625200 Oryza sativa ssp. japonica HOM05D008272 ORTHO05D010429 4.5e-43 177.9 116 72.4
Lj1A872T54 Lonicera japonica HOM05D008272 ORTHO05D010429 9.9e-43 176.8 116 70.7
Hund14975 Selenicereus undatus HOM05D008272 ORTHO05D010429 4.9e-42 174.5 109 71.6
Cc05_g13720 Coffea canephora HOM05D008272 ORTHO05D010429 8.4e-42 173.7 117 69.2
Sabra11G0124700 Salix brachista HOM05D008272 ORTHO05D010429 1.4e-41 172.9 116 69.8
Sabra11G0124400 Salix brachista HOM05D008272 ORTHO05D010429 4.2e-41 171.4 113 72.6
Eucgr.F00768 Eucalyptus grandis HOM05D008272 ORTHO05D010429 1.6e-40 169.5 116 68.1
unitig_62.g23281 Utricularia gibba HOM05D008272 ORTHO05D010429 1.3e-39 166.4 117 65.8
FAN24G3338 Fragaria x ananassa HOM05D008272 ORTHO05D010429 9.6e-38 160.2 116 67.2
SMO119G0124 Selaginella moellendorffii HOM05D008272 ORTHO05D010429 2.8e-37 158.7 116 63.8
FvH4_2g04690 Fragaria vesca HOM05D008272 ORTHO05D010429 3.7e-37 158.3 115 67.0
Haze_09670 Corylus avellana HOM05D008272 ORTHO05D010429 7.9e-32 140.6 79 78.5
MD11G1219100 Malus domestica HOM05D008272 ORTHO05D010429 2.3e-31 139.0 91 69.2
PGR031G2232 Punica granatum HOM05D008272 ORTHO05D010429 5.7e-30 134.4 79 74.7
MBI16_g12297_MAGBIO Magnolia biondii HOM05D008272 ORTHO05D010429 6.9e-28 127.5 78 70.5
MBI02_g22115_MAGBIO Magnolia biondii HOM05D008272 ORTHO05D010429 1.5e-27 126.3 78 70.5
Duzib213G0361 Durio zibethinus HOM05D008272 ORTHO05D010429 2.2e-26 122.5 67 88.1
CAN.G337.128 Capsicum annuum HOM05D008272 ORTHO05D010429 3.2e-25 118.6 73 69.9
Cfa020968 Carpinus fangiana HOM05D008272 ORTHO05D010429 3.9e-23 111.7 62 77.4
VMungo0540G1205 Vigna mungo HOM05D008272 ORTHO05D010429 6.7e-23 110.9 61 91.8
MD03G1201900 Malus domestica HOM05D008272 ORTHO05D010429 8.5e-18 94.0 58 74.1
Sc16g0006090 Simmondsia chinensis HOM05D008272 ORTHO05D010429 2.7e-16 89.0 54 77.8
PRCOL_00003374 Prasinoderma coloniale HOM05D008272 ORTHO05D010429 1.7e-10 69.7 87 40.2
MSTRG.10698 Avicennia marina HOM05D006248 ORTHO05D007896 1.1e-09 67.0 84 42.9
Nn004s41404 Nelumbo nucifera HOM05D008272 ORTHO05D010429 1.1e-09 67.0 44 75.0
Migut.K00321 Erythranthe guttata HOM05D006248 ORTHO05D007896 3.2e-09 65.5 105 38.1
unitig_578.g15997 Utricularia gibba HOM05D008272 ORTHO05D010429 3.2e-09 65.5 51 62.7
A03p60090 Brassica napus HOM05D006248 ORTHO05D007896 1.6e-08 63.2 61 49.2
BraA03t15055Z Brassica rapa HOM05D006248 ORTHO05D007896 1.6e-08 63.2 61 49.2
BcaNung00567 Brassica carinata HOM05D006248 ORTHO05D007896 2.1e-08 62.8 61 49.2
BcaNung04566 Brassica carinata HOM05D006248 ORTHO05D007896 2.1e-08 62.8 61 49.2
C07p58030 Brassica napus HOM05D002357 ORTHO05D007896 2.1e-08 62.8 61 49.2
BolC7t46261H Brassica oleracea HOM05D006248 ORTHO05D007896 2.1e-08 62.8 61 49.2
Sp7g28450 Schrenkiella parvula HOM05D006248 ORTHO05D007896 2.1e-08 62.8 61 49.2
HanXRQChr15g0490751 Helianthus annuus HOM05D006248 ORTHO05D007896 2.7e-08 62.4 55 52.7
Lsat_1_v5_gn_4_165100 Lactuca sativa HOM05D006248 ORTHO05D007896 3.6e-08 62.0 55 52.7
Carub.0007s0999 Capsella rubella HOM05D006248 ORTHO05D007896 4.7e-08 61.6 61 47.5
CARHR238450 Cardamine hirsuta HOM05D006248 ORTHO05D007896 4.7e-08 61.6 61 47.5
Nitab4.5_0006523g0010 Nicotiana tabacum HOM05D006248 ORTHO05D007896 4.7e-08 61.6 48 54.2
HanXRQChr14g0448981 Helianthus annuus HOM05D006248 ORTHO05D007896 6.1e-08 61.2 107 34.6
Lsat_1_v5_gn_2_85220 Lactuca sativa HOM05D006248 ORTHO05D007896 6.1e-08 61.2 55 52.7
PGSC0003DMG402011138 Solanum tuberosum HOM05D006248 ORTHO05D007896 1.0e-07 60.5 53 49.1
SGA_v2.0_scaffold347G49562 Striga asiatica HOM05D006248 ORTHO05D007896 1.0e-07 60.5 84 40.5
CAN.G160.64 Capsicum annuum HOM05D006248 ORTHO05D007896 1.4e-07 60.1 48 52.1
Cc06_g14900 Coffea canephora HOM05D006248 ORTHO05D007896 1.4e-07 60.1 78 41.0
Thhalv10025500m.g Eutrema salsugineum HOM05D006248 ORTHO05D007896 1.8e-07 59.7 61 47.5
Mapoly0168s0025 Marchantia polymorpha HOM05D006248 ORTHO05D007896 1.8e-07 59.7 115 33.0
Peaxi162Scf00401g00615 Petunia axillaris HOM05D006248 ORTHO05D007896 1.8e-07 59.7 48 50.0
SalBow1G5186 Salvia bowleyana HOM05D006248 ORTHO05D007896 1.8e-07 59.7 103 35.0
Solyc07g005580.4 Solanum lycopersicum HOM05D006248 ORTHO05D007896 1.8e-07 59.7 53 49.1
Sopen07g001690 Solanum pennellii HOM05D006248 ORTHO05D007896 1.8e-07 59.7 53 49.1
ECA238G3803 Erigeron canadensis HOM05D006248 ORTHO05D007896 2.3e-07 59.3 55 50.9
Oeu054273.3 Olea europaea HOM05D006248 ORTHO05D007896 2.3e-07 59.3 53 50.9
Cpa.g.sc46.160 Carica papaya HOM05D006248 ORTHO05D007896 3.0e-07 58.9 53 49.1
COL.COLO4_18812 Corchorus olitorius HOM05D006248 ORTHO05D007896 3.0e-07 58.9 53 49.1
Gohir.D06G098450 Gossypium hirsutum HOM05D006248 ORTHO05D007896 3.0e-07 58.9 59 45.8
Gorai.010G113400 Gossypium raimondii HOM05D006248 ORTHO05D007896 3.0e-07 58.9 64 42.2
ATR0579G167 Amborella trichopoda HOM05D006248 ORTHO05D007896 3.9e-07 58.5 103 34.0
AL7G21560 Arabidopsis lyrata HOM05D006248 ORTHO05D007896 3.9e-07 58.5 61 45.9
Gohir.A06G097800 Gossypium hirsutum HOM05D006248 ORTHO05D007896 3.9e-07 58.5 59 44.1
Nitab4.5_0005147g0010 Nicotiana tabacum HOM05D006248 ORTHO05D007896 3.9e-07 58.5 48 52.1
DCAR_019396 Daucus carota HOM05D006248 ORTHO05D007896 5.1e-07 58.2 105 36.2
Nn7g36251 Nelumbo nucifera HOM05D006248 ORTHO05D007896 5.1e-07 58.2 53 47.2
Pp3c2_20500 Physcomitrium patens HOM05D006248 ORTHO05D007896 5.1e-07 58.2 110 30.9
Aa31LG2G19940 Aethionema arabicum HOM05D006248 ORTHO05D007896 6.7e-07 57.8 53 49.1
CSS0008954 Camellia sinensis var. sinensis HOM05D006248 ORTHO05D007896 6.7e-07 57.8 78 39.7
Ciclev10008803m.g Citrus clementina HOM05D006248 ORTHO05D007896 8.8e-07 57.4 53 47.2
Duzib168G1034 Durio zibethinus HOM05D006248 ORTHO05D007896 8.8e-07 57.4 53 45.3
Thecc.09G029500 Theobroma cacao HOM05D006248 ORTHO05D007896 8.8e-07 57.4 53 47.2
CDE11G0689 Ceratophyllum demersum HOM05D006248 ORTHO05D007896 1.1e-06 57.0 53 47.2
Dinv41376 Davidia involucrata HOM05D000122 ORTHO05D000139 1.1e-06 57.0 53 49.1
Lj7A459G62 Lonicera japonica HOM05D006248 ORTHO05D007896 1.1e-06 57.0 55 49.1
Hund24368 Selenicereus undatus HOM05D006248 ORTHO05D007896 1.5e-06 56.6 53 45.3
GSVIVG01023612001 Vitis vinifera HOM05D006248 ORTHO05D007896 1.5e-06 56.6 53 47.2
PGR102G2393 Punica granatum HOM05D006248 ORTHO05D007896 2.0e-06 56.2 80 37.5
RcHm_v2.0_Chr2g0085591 Rosa chinensis HOM05D006248 ORTHO05D007896 2.0e-06 56.2 84 36.9
TWI09G0649 Tripterygium wilfordii HOM05D006248 ORTHO05D007896 2.0e-06 56.2 53 49.1
Atru.chr7.37 Acer truncatum HOM05D006248 ORTHO05D007896 2.6e-06 55.8 53 49.1
PSO384G3884 Papaver somniferum HOM05D006248 ORTHO05D007896 2.6e-06 55.8 48 52.1
Potri.006G183700 Populus trichocarpa HOM05D006248 ORTHO05D007896 2.6e-06 55.8 53 47.2
AT4G30580 Arabidopsis thaliana HOM05D006248 ORTHO05D007896 3.3e-06 55.5 61 44.3
FAN23G2094 Fragaria x ananassa HOM05D000238 ORTHO05D001043 3.3e-06 55.5 48 52.1
Glyma.12G163500 Glycine max HOM05D006248 ORTHO05D007896 4.4e-06 55.1 53 47.2
Manes.14G143900 Manihot esculenta HOM05D006248 ORTHO05D007896 4.4e-06 55.1 48 50.0
vmacro16799 Vaccinium macrocarpon HOM05D006248 ORTHO05D007896 4.4e-06 55.1 66 40.9
Actinidia38318 Actinidia chinensis HOM05D006248 ORTHO05D007896 5.7e-06 54.7 53 47.2
Aqoxy2G03376 Aquilegia oxysepala HOM05D006248 ORTHO05D007896 5.7e-06 54.7 48 47.9
Os10g0497100 Oryza sativa ssp. japonica HOM05D006248 ORTHO05D007896 5.7e-06 54.7 48 47.9
Sed0021098 Sechium edule HOM05D006248 ORTHO05D007896 5.7e-06 54.7 53 45.3
unitig_746.g26565 Utricularia gibba HOM05D006248 ORTHO05D007896 5.7e-06 54.7 53 45.3
arahy.Tifrunner.gnm1.ann1.VIT8JQ Arachis hypogaea HOM05D006248 ORTHO05D007896 7.4e-06 54.3 53 43.4
CANSAT80G0015 Cannabis sativa HOM05D006248 ORTHO05D007896 7.4e-06 54.3 48 50.0
CANSAT80G1584 Cannabis sativa HOM05D006248 ORTHO05D007896 7.4e-06 54.3 48 50.0
CsaV3_4G030910 Cucumis sativus L. HOM05D006248 ORTHO05D007896 7.4e-06 54.3 53 43.4
Lj6g0025769 Lotus japonicus HOM05D006248 ORTHO05D007896 7.4e-06 54.3 53 45.3
Sc06g0007960 Simmondsia chinensis HOM05D006248 ORTHO05D007896 7.4e-06 54.3 53 45.3
Ca_03171_v3 Cicer arietinum L. HOM05D006248 ORTHO05D007896 9.7e-06 53.9 48 47.9
Gohir.D05G054900 Gossypium hirsutum HOM05D006248 ORTHO05D007896 9.7e-06 53.9 53 47.2
Prupe.7G263300 Prunus persica HOM05D006248 ORTHO05D007896 9.7e-06 53.9 48 47.9
TAR374G0826 Trochodendron aralioides HOM05D006248 ORTHO05D007896 9.7e-06 53.9 53 45.3


User provided reference genes

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