Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.L001624 Phaseolus vulgaris HOM05D003862 ORTHO05D004398 1.2e-49 199.5 99 100.0
Lj3g0015625 Lotus japonicus HOM05D003862 ORTHO05D004398 4.2e-39 164.5 96 82.3
Glyma.03G082300 Glycine max HOM05D003862 ORTHO05D004398 2.1e-38 162.2 94 84.0
arahy.Tifrunner.gnm1.ann1.GD7L84 Arachis hypogaea HOM05D003862 ORTHO05D004398 2.4e-34 148.7 91 79.1
arahy.Tifrunner.gnm1.ann1.L1N949 Arachis hypogaea HOM05D003862 ORTHO05D004398 5.4e-34 147.5 91 78.0
arahy.Tifrunner.gnm1.ann1.817FQF Arachis hypogaea HOM05D003862 ORTHO05D004398 9.2e-34 146.7 91 78.0
arahy.Tifrunner.gnm1.ann1.JG2TRE Arachis hypogaea HOM05D003862 ORTHO05D004398 9.2e-34 146.7 91 78.0
Cfa017379 Carpinus fangiana HOM05D003862 ORTHO05D004398 7.8e-33 143.7 93 73.1
Haze_20791 Corylus avellana HOM05D003862 ORTHO05D004398 7.8e-33 143.7 93 73.1
TPR.G5603 Trifolium pratense HOM05D003862 ORTHO05D004398 1.7e-32 142.5 94 70.2
Cfa011504 Carpinus fangiana HOM05D003862 ORTHO05D004398 2.9e-32 141.7 93 72.0
MD11G1108200 Malus domestica HOM05D003862 ORTHO05D004398 3.8e-32 141.4 93 72.0
Psat7g239120 Pisum sativum HOM05D003862 ORTHO05D004398 3.8e-32 141.4 94 70.2
TWI36G0288 Tripterygium wilfordii HOM05D003862 ORTHO05D004398 3.8e-32 141.4 93 71.0
RcHm_v2.0_Chr5g0064531 Rosa chinensis HOM05D003862 ORTHO05D004398 5.0e-32 141.0 93 72.0
CiPaw.09G192600 Carya illinoinensis HOM05D003862 ORTHO05D004398 6.6e-32 140.6 93 71.0
Lalb_Chr03g0026631 Lupinus albus HOM05D003862 ORTHO05D004398 6.6e-32 140.6 93 69.9
Dinv17003 Davidia involucrata HOM05D003862 ORTHO05D004398 8.6e-32 140.2 93 73.1
Dinv42952 Davidia involucrata HOM05D003862 ORTHO05D004398 8.6e-32 140.2 93 73.1
Dinv43148 Davidia involucrata HOM05D003862 ORTHO05D004398 8.6e-32 140.2 93 73.1
CiPaw.14G068400 Carya illinoinensis HOM05D003862 ORTHO05D004398 1.1e-31 139.8 93 71.0
Lalb_Chr19g0137831 Lupinus albus HOM05D003862 ORTHO05D004398 1.5e-31 139.4 93 68.8
HPP92_018126 Vanilla planifolia HOM05D003862 ORTHO05D004398 1.9e-31 139.0 93 69.9
HPP92_018144 Vanilla planifolia HOM05D003862 ORTHO05D004398 1.9e-31 139.0 93 69.9
Prupe.6G077400 Prunus persica HOM05D003862 ORTHO05D004398 2.5e-31 138.7 93 71.0
CSS0028919 Camellia sinensis var. sinensis HOM05D003862 ORTHO05D004398 3.3e-31 138.3 93 71.0
CSS0038231 Camellia sinensis var. sinensis HOM05D003862 ORTHO05D004398 3.3e-31 138.3 93 71.0
CDE07G2069 Ceratophyllum demersum HOM05D003862 ORTHO05D004398 3.3e-31 138.3 93 69.9
MELO3C009258.2 Cucumis melo HOM05D003862 ORTHO05D004398 3.3e-31 138.3 93 68.8
CsaV3_3G034900 Cucumis sativus L. HOM05D003862 ORTHO05D004398 3.3e-31 138.3 93 68.8
Glyma.12G063000 Glycine max HOM05D003862 ORTHO05D004398 3.3e-31 138.3 93 68.8
Oeu014415.1 Olea europaea HOM05D003862 ORTHO05D004398 3.3e-31 138.3 93 71.0
Hma1.2p1_0936F.1_g238710 Hydrangea macrophylla HOM05D003862 ORTHO05D004398 4.3e-31 137.9 93 71.0
Hma1.2p1_1513F.1_g287975 Hydrangea macrophylla HOM05D003862 ORTHO05D004398 4.3e-31 137.9 93 71.0
Medtr4g063925 Medicago truncatula HOM05D003862 ORTHO05D004398 5.6e-31 137.5 93 67.7
TWI75G0870 Tripterygium wilfordii HOM05D003862 ORTHO05D004398 5.6e-31 137.5 93 68.8
Cc10_g12100 Coffea canephora HOM05D003862 ORTHO05D004398 7.3e-31 137.1 93 69.9
Oeu032100.1 Olea europaea HOM05D003862 ORTHO05D004398 7.3e-31 137.1 93 69.9
TAR369G0814 Trochodendron aralioides HOM05D003862 ORTHO05D004398 7.3e-31 137.1 93 71.0
ClCG10G021140 Citrullus lanatus HOM05D003862 ORTHO05D004398 9.5e-31 136.7 93 67.7
AUR62038108 Chenopodium quinoa HOM05D003862 ORTHO05D004398 1.2e-30 136.3 93 68.8
Glyma.11G139400 Glycine max HOM05D003862 ORTHO05D004398 1.2e-30 136.3 93 67.7
Thecc.09G321500 Theobroma cacao HOM05D003862 ORTHO05D004398 1.2e-30 136.3 93 67.7
Nitab4.5_0006455g0030 Nicotiana tabacum HOM05D003862 ORTHO05D004398 2.1e-30 135.6 93 67.7
Sed0022625 Sechium edule HOM05D003862 ORTHO05D004398 2.1e-30 135.6 93 68.8
EL10Ac5g11591 Beta vulgaris HOM05D003862 ORTHO05D004398 2.8e-30 135.2 93 68.8
FvH4_3g36110 Fragaria vesca HOM05D003862 ORTHO05D004398 2.8e-30 135.2 94 66.0
FAN11G3597 Fragaria x ananassa HOM05D003862 ORTHO05D004398 2.8e-30 135.2 94 66.0
FAN16G1598 Fragaria x ananassa HOM05D003862 ORTHO05D004398 2.8e-30 135.2 94 66.0
FAN21G0907 Fragaria x ananassa HOM05D003862 ORTHO05D004398 2.8e-30 135.2 94 66.0
FAN25G1864 Fragaria x ananassa HOM05D003862 ORTHO05D004398 2.8e-30 135.2 94 66.0
Gohir.D03G125700 Gossypium hirsutum HOM05D003862 ORTHO05D004398 2.8e-30 135.2 93 66.7
Gorai.003G131900 Gossypium raimondii HOM05D003862 ORTHO05D004398 2.8e-30 135.2 93 66.7
MBI05_g22042_MAGBIO Magnolia biondii HOM05D003862 ORTHO05D004398 2.8e-30 135.2 93 68.8
PGR102G0842 Punica granatum HOM05D003862 ORTHO05D004398 2.8e-30 135.2 93 68.8
vmacro20157 Vaccinium macrocarpon HOM05D003862 ORTHO05D004398 2.8e-30 135.2 93 67.7
Migut.D00467 Erythranthe guttata HOM05D003862 ORTHO05D004398 3.6e-30 134.8 93 69.9
SalBow5G2575 Salvia bowleyana HOM05D003862 ORTHO05D004398 3.6e-30 134.8 93 68.8
Sed0018689 Sechium edule HOM05D003862 ORTHO05D004398 3.6e-30 134.8 93 67.7
AUR62025808 Chenopodium quinoa HOM05D003862 ORTHO05D004398 4.7e-30 134.4 93 67.7
TWI31G1113 Tripterygium wilfordii HOM05D003862 ORTHO05D004398 4.7e-30 134.4 93 67.7
Duzib168G1372 Durio zibethinus HOM05D003862 ORTHO05D004398 6.1e-30 134.0 93 66.7
Duzib170G0179 Durio zibethinus HOM05D003862 ORTHO05D004398 6.1e-30 134.0 93 66.7
MD12G1141800 Malus domestica HOM05D003862 ORTHO05D004398 6.1e-30 134.0 94 67.0
Nitab4.5_0002018g0010 Nicotiana tabacum HOM05D003862 ORTHO05D004398 6.1e-30 134.0 93 66.7
Ah.02g115390 Amaranthus hybridus HOM05D003862 ORTHO05D004398 8.0e-30 133.7 93 66.7
Cpa.g.sc81.150 Carica papaya HOM05D003862 ORTHO05D004398 8.0e-30 133.7 93 66.7
Gohir.A03G042066 Gossypium hirsutum HOM05D003862 ORTHO05D004398 8.0e-30 133.7 93 65.6
TAR636G2804 Trochodendron aralioides HOM05D003862 ORTHO05D004398 8.0e-30 133.7 93 67.7
GSVIVG01024961001 Vitis vinifera HOM05D003862 ORTHO05D004398 8.0e-30 133.7 93 67.7
Lsat_1_v5_gn_4_177081 Lactuca sativa HOM05D003862 ORTHO05D004398 1.0e-29 133.3 93 67.7
Lsat_1_v5_gn_5_170681 Lactuca sativa HOM05D003862 ORTHO05D004398 1.0e-29 133.3 93 67.7
Lj3g0018643 Lotus japonicus HOM05D003862 ORTHO05D004398 1.0e-29 133.3 93 66.7
PGR119G1270 Punica granatum HOM05D003862 ORTHO05D004398 1.0e-29 133.3 93 67.7
unitig_21.g20465 Utricularia gibba HOM05D003164 ORTHO05D003575 1.0e-29 133.3 93 65.6
HanXRQChr05g0136091 Helianthus annuus HOM05D003862 ORTHO05D004398 1.4e-29 132.9 94 66.0
Os12g0571200 Oryza sativa ssp. japonica HOM05D003862 ORTHO05D004398 1.4e-29 132.9 93 67.7
PSO063G5647 Papaver somniferum HOM05D003862 ORTHO05D004398 1.4e-29 132.9 93 67.7
PSO339G2698 Papaver somniferum HOM05D003862 ORTHO05D004398 1.4e-29 132.9 93 67.7
PSO384G2795 Papaver somniferum HOM05D003862 ORTHO05D004398 1.4e-29 132.9 93 67.7
RcHm_v2.0_Chr3g0466561 Rosa chinensis HOM05D003862 ORTHO05D004398 1.4e-29 132.9 95 66.3
Hund10643 Selenicereus undatus HOM05D003862 ORTHO05D004398 1.4e-29 132.9 93 66.7
Migut.D01636 Erythranthe guttata HOM05D003862 ORTHO05D004398 1.8e-29 132.5 93 67.7
MD04G1129100 Malus domestica HOM05D003862 ORTHO05D004398 1.8e-29 132.5 94 67.0
Manes.02G133100 Manihot esculenta HOM05D003862 ORTHO05D004398 1.8e-29 132.5 94 66.0
GSVIVG01034172001 Vitis vinifera HOM05D003862 ORTHO05D004398 1.8e-29 132.5 93 67.7
Nitab4.5_0000349g0310 Nicotiana tabacum HOM05D003862 ORTHO05D004398 2.3e-29 132.1 93 67.7
Nitab4.5_0001911g0090 Nicotiana tabacum HOM05D003862 ORTHO05D004398 2.3e-29 132.1 93 67.7
THA.LOC104799442 Tarenaya hassleriana HOM05D003862 ORTHO05D004398 2.3e-29 132.1 93 64.5
unitig_744.g24379 Utricularia gibba HOM05D003862 ORTHO05D004398 2.3e-29 132.1 96 62.5
Ciclev10029679m.g Citrus clementina HOM05D003862 ORTHO05D004398 3.0e-29 131.7 93 63.4
Prupe.6G255300 Prunus persica HOM05D003862 ORTHO05D004398 3.0e-29 131.7 94 66.0
Ca_19161_v3 Cicer arietinum L. HOM05D003862 ORTHO05D004398 4.0e-29 131.3 93 65.6
DCAR_030095 Daucus carota HOM05D003862 ORTHO05D004398 4.0e-29 131.3 93 65.6
Phvul.011G064100 Phaseolus vulgaris HOM05D003862 ORTHO05D004398 4.0e-29 131.3 93 64.5
Manes.01G173900 Manihot esculenta HOM05D003862 ORTHO05D004398 5.2e-29 131.0 94 64.9
CAN.G1195.10 Capsicum annuum HOM05D003862 ORTHO05D004398 6.8e-29 130.6 93 67.7
COL.COLO4_18508 Corchorus olitorius HOM05D003862 ORTHO05D004398 6.8e-29 130.6 93 65.6
Duzib150G0578 Durio zibethinus HOM05D003862 ORTHO05D004398 6.8e-29 130.6 93 65.6
Sp2g01740 Schrenkiella parvula HOM05D003862 ORTHO05D004398 6.8e-29 130.6 93 64.5
Solyc10g086510.2 Solanum lycopersicum HOM05D003862 ORTHO05D004398 6.8e-29 130.6 93 67.7
Sopen10g035890 Solanum pennellii HOM05D003862 ORTHO05D004398 6.8e-29 130.6 93 67.7
PGSC0003DMG400019201 Solanum tuberosum HOM05D003862 ORTHO05D004398 6.8e-29 130.6 93 67.7
AT3G46560 Arabidopsis thaliana HOM05D003862 ORTHO05D004398 8.9e-29 130.2 93 64.5
THA.LOC104810779 Tarenaya hassleriana HOM05D003862 ORTHO05D004398 8.9e-29 130.2 93 63.4
Thhalv10023780m.g Eutrema salsugineum HOM05D003862 ORTHO05D004398 1.2e-28 129.8 93 64.5
Gohir.D13G233100 Gossypium hirsutum HOM05D003862 ORTHO05D004398 1.2e-28 129.8 93 63.4
Gorai.013G263900 Gossypium raimondii HOM05D003862 ORTHO05D004398 1.2e-28 129.8 93 63.4
Peaxi162Scf00330g00415 Petunia axillaris HOM05D003862 ORTHO05D004398 1.5e-28 129.4 93 65.6
Thhalv10002743m.g Eutrema salsugineum HOM05D003862 ORTHO05D004398 2.0e-28 129.0 93 63.4
Gohir.A13G227500 Gossypium hirsutum HOM05D003862 ORTHO05D004398 2.0e-28 129.0 93 63.4
Carub.0005s1283 Capsella rubella HOM05D003862 ORTHO05D004398 2.6e-28 128.6 93 63.4
Actinidia05313 Actinidia chinensis HOM05D003862 ORTHO05D004398 3.4e-28 128.3 92 66.3
Cfa016018 Carpinus fangiana HOM05D000273 ORTHO05D004398 3.4e-28 128.3 93 67.7
AL5G25420 Arabidopsis lyrata HOM05D003862 ORTHO05D004398 4.4e-28 127.9 93 63.4
Sc05g0009640 Simmondsia chinensis HOM05D003862 ORTHO05D004398 9.8e-28 126.7 93 62.4
Carub.0003s2691 Capsella rubella HOM05D003862 ORTHO05D004398 1.7e-27 125.9 93 62.4
CARHR155240 Cardamine hirsuta HOM05D003862 ORTHO05D004398 1.7e-27 125.9 93 62.4
BcaC04g22454 Brassica carinata HOM05D003862 ORTHO05D004398 2.2e-27 125.6 93 63.4
A09p15900 Brassica napus HOM05D003862 ORTHO05D004398 2.2e-27 125.6 93 63.4
C09p19140 Brassica napus HOM05D003862 ORTHO05D004398 2.2e-27 125.6 93 63.4
BolC9t54821H Brassica oleracea HOM05D003862 ORTHO05D004398 2.2e-27 125.6 93 63.4
BraA09t37226Z Brassica rapa HOM05D003862 ORTHO05D004398 2.2e-27 125.6 93 63.4
MD03G1093400 Malus domestica HOM05D003862 ORTHO05D004398 2.2e-27 125.6 81 74.1
TPR.G14480 Trifolium pratense HOM05D003862 ORTHO05D004398 2.2e-27 125.6 93 64.5
CANSAT54G2947 Cannabis sativa HOM05D003862 ORTHO05D004398 4.9e-27 124.4 94 64.9
FAN02G2377 Fragaria x ananassa HOM05D003862 ORTHO05D004398 4.9e-27 124.4 86 66.3
FAN09G4075 Fragaria x ananassa HOM05D003862 ORTHO05D004398 4.9e-27 124.4 86 66.3
TPR.G17728 Trifolium pratense HOM05D003862 ORTHO05D004398 4.9e-27 124.4 93 63.4
arahy.Tifrunner.gnm1.ann1.PAA8CG Arachis hypogaea HOM05D003862 ORTHO05D004398 6.4e-27 124.0 93 60.2
arahy.Tifrunner.gnm1.ann1.Q4VW5J Arachis hypogaea HOM05D003862 ORTHO05D004398 6.4e-27 124.0 93 60.2
ECA248G1530 Erigeron canadensis HOM05D003862 ORTHO05D004398 1.4e-26 122.9 93 60.2
FvH4_6g13690 Fragaria vesca HOM05D003862 ORTHO05D004398 2.4e-26 122.1 86 65.1
Potri.012G039100 Populus trichocarpa HOM05D003862 ORTHO05D004398 2.4e-26 122.1 94 58.5
Sabra12G0027600 Salix brachista HOM05D003862 ORTHO05D004398 2.4e-26 122.1 94 58.5
BcaC02g10413 Brassica carinata HOM05D003862 ORTHO05D004398 4.1e-26 121.3 93 60.2
A03p68180 Brassica napus HOM05D003862 ORTHO05D004398 4.1e-26 121.3 93 60.2
C04p29160 Brassica napus HOM05D003862 ORTHO05D004398 4.1e-26 121.3 93 60.2
BolC4t24450H Brassica oleracea HOM05D003862 ORTHO05D004398 4.1e-26 121.3 93 60.2
BraA01t02647Z Brassica rapa HOM05D003862 ORTHO05D004398 4.1e-26 121.3 93 60.2
Eucgr.A01265 Eucalyptus grandis HOM05D003862 ORTHO05D004398 4.1e-26 121.3 87 65.5
Peaxi162Scf01517g00013 Petunia axillaris HOM05D003862 ORTHO05D004398 4.1e-26 121.3 91 61.5
Aa31sc23G440 Aethionema arabicum HOM05D003862 ORTHO05D004398 5.4e-26 120.9 93 58.1
PGR004G0102 Punica granatum HOM05D003862 ORTHO05D004398 5.4e-26 120.9 90 60.0
ATR0559G041 Amborella trichopoda HOM05D003862 ORTHO05D004398 7.0e-26 120.6 81 70.4
Aa31LG4G15560 Aethionema arabicum HOM05D003862 ORTHO05D004398 9.2e-26 120.2 93 59.1
Rhsim05G0192800 Rhododendron simsii HOM05D003862 ORTHO05D004398 9.2e-26 120.2 116 53.4
HanXRQChr01g0009491 Helianthus annuus HOM05D003862 ORTHO05D004398 1.6e-25 119.4 95 58.9
BcaB07g31364 Brassica carinata HOM05D003862 ORTHO05D004398 3.5e-25 118.2 93 58.1
Hund04959 Selenicereus undatus HOM05D003862 ORTHO05D004398 5.9e-25 117.5 91 59.3
Pp3c24_15930 Physcomitrium patens HOM05D003862 ORTHO05D004398 1.0e-24 116.7 87 63.2
VMungo1127G0240 Vigna mungo HOM05D003862 ORTHO05D004398 2.3e-24 115.5 83 65.1
AagrBONN_evm.TU.Sc2ySwM_368.1516 Anthoceros agrestis HOM05D003862 ORTHO05D004398 3.0e-24 115.2 87 60.9
Mapoly0020s0168 Marchantia polymorpha HOM05D003862 ORTHO05D004398 3.9e-24 114.8 88 58.0
Pp3c20_6200 Physcomitrium patens HOM05D003862 ORTHO05D004398 1.1e-23 113.2 87 62.1
SalBow2G1777 Salvia bowleyana HOM05D003862 ORTHO05D004398 7.3e-23 110.5 93 54.8
Actinidia11257 Actinidia chinensis HOM05D003862 ORTHO05D004398 1.2e-22 109.8 77 71.4
Aqoxy4G02928 Aquilegia oxysepala HOM05D003862 ORTHO05D004398 1.2e-22 109.8 93 52.7
QL07p048307 Quercus lobata HOM05D003862 ORTHO05D004398 2.8e-22 108.6 158 41.1
vmacro08654 Vaccinium macrocarpon HOM05D003862 ORTHO05D004398 6.2e-22 107.5 149 41.6
FAN27G3302 Fragaria x ananassa HOM05D003862 ORTHO05D004398 5.2e-21 104.4 94 54.3
SMO367G0781 Selaginella moellendorffii HOM05D003862 ORTHO05D004398 6.8e-21 104.0 80 60.0
Haze_24096 Corylus avellana HOM05D003862 ORTHO05D004398 3.4e-20 101.7 76 64.5
Medtr4g021715 Medicago truncatula HOM05D003862 ORTHO05D004398 9.8e-20 100.1 94 56.4
QL01p031927 Quercus lobata HOM05D003862 ORTHO05D004398 2.2e-19 99.0 62 74.2
MCO12G250 Micromonas commoda HOM05D003862 ORTHO05D004398 2.9e-19 98.6 82 54.9
unitig_6.g29269 Utricularia gibba HOM05D003862 ORTHO05D004398 3.7e-19 98.2 79 55.7
unitig_747.g21430 Utricularia gibba HOM05D003862 ORTHO05D004398 3.7e-19 98.2 79 55.7
CBR_g46834 Chara braunii HOM05D003862 ORTHO05D004398 1.1e-18 96.7 93 50.5
Sc20g0004910 Simmondsia chinensis HOM05D003862 ORTHO05D004398 1.4e-18 96.3 62 72.6
Dinv37171 Davidia involucrata HOM05D003862 ORTHO05D004398 4.1e-18 94.7 61 72.1
Nn2g14532 Nelumbo nucifera HOM05D003862 ORTHO05D004398 5.4e-18 94.4 62 69.4
CAN.G326.7 Capsicum annuum HOM05D003862 ORTHO05D004398 7.0e-18 94.0 62 67.7
Peaxi162Scf00165g00129 Petunia axillaris HOM05D003862 ORTHO05D004398 2.0e-17 92.4 86 57.0
FAN14G4115 Fragaria x ananassa HOM05D003862 ORTHO05D004398 3.9e-16 88.2 86 53.5
MBI14_g20103_MAGBIO Magnolia biondii HOM05D003862 ORTHO05D004398 1.5e-15 86.3 93 50.5
Os05g0111100 Oryza sativa ssp. japonica HOM05D003862 ORTHO05D004398 2.8e-14 82.0 78 50.0
Cre01.g033400 Chlamydomonas reinhardtii HOM05D003862 ORTHO05D004398 1.4e-13 79.7 79 41.8
Solyc08g048070.1 Solanum lycopersicum HOM05D003862 ORTHO05D004398 1.8e-13 79.3 67 55.2
PRCOL_00005138 Prasinoderma coloniale HOM05D003862 ORTHO05D004398 9.9e-12 73.6 86 37.2
Medtr4g021670 Medicago truncatula HOM05D000256 ORTHO05D000119 2.1e-09 65.9 67 52.2


User provided reference genes

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