Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.L001604 Phaseolus vulgaris HOM05D006409 ORTHO05D008250 6.9e-188 660.6 364 100.0
VMungo1215G3198 Vigna mungo HOM05D006409 ORTHO05D008250 8.3e-141 504.2 336 83.9
Glyma.05G022800 Glycine max HOM05D006409 ORTHO05D008250 4.9e-133 478.4 385 72.5
Glyma.17G076800 Glycine max HOM05D006409 ORTHO05D008250 6.4e-133 478.0 385 73.0
Lj4g0024886 Lotus japonicus HOM05D006409 ORTHO05D008250 4.9e-109 398.7 386 64.0
Medtr4g109330 Medicago truncatula HOM05D006409 ORTHO05D008250 1.8e-95 353.6 319 65.8
Psat4g048440 Pisum sativum HOM05D006409 ORTHO05D008250 7.6e-94 348.2 325 64.3
arahy.Tifrunner.gnm1.ann1.PS4SMH Arachis hypogaea HOM05D006409 ORTHO05D008250 5.5e-92 342.0 336 61.9
TPR.G2042 Trifolium pratense HOM05D006409 ORTHO05D008250 3.0e-90 336.3 349 59.0
arahy.Tifrunner.gnm1.ann1.4D2E4C Arachis hypogaea HOM05D006409 ORTHO05D008250 6.9e-87 325.1 336 59.5
Lalb_Chr13g0302951 Lupinus albus HOM05D006409 ORTHO05D008250 2.0e-86 323.6 342 58.2
Ciclev10020474m.g Citrus clementina HOM05D006409 ORTHO05D008250 1.1e-81 307.8 337 56.4
Ca_21789_v3 Cicer arietinum L. HOM05D006409 ORTHO05D008250 9.0e-79 298.1 282 65.2
Sabra15G0078400 Salix brachista HOM05D006409 ORTHO05D008250 1.0e-77 294.7 381 50.9
MD14G1208800 Malus domestica HOM05D006409 ORTHO05D008250 1.7e-77 293.9 338 55.9
QL10p018676 Quercus lobata HOM05D006409 ORTHO05D008250 2.5e-76 290.0 339 53.4
TAR629G2567 Trochodendron aralioides HOM05D006409 ORTHO05D008250 1.2e-75 287.7 391 49.1
Thecc.03G097200 Theobroma cacao HOM05D006409 ORTHO05D008250 2.0e-73 280.4 382 50.3
Potri.015G048900 Populus trichocarpa HOM05D006409 ORTHO05D008250 1.3e-72 277.7 339 52.2
CiPaw.11G050000 Carya illinoinensis HOM05D006409 ORTHO05D008250 2.8e-72 276.6 340 52.9
Manes.14G084000 Manihot esculenta HOM05D006409 ORTHO05D008250 2.8e-72 276.6 339 51.3
Cpa.g.sc94.9 Carica papaya HOM05D006409 ORTHO05D008250 1.1e-71 274.6 338 50.6
Haze_07680 Corylus avellana HOM05D006409 ORTHO05D008250 1.2e-70 271.2 307 54.7
Prupe.5G201100 Prunus persica HOM05D006409 ORTHO05D008250 1.5e-70 270.8 338 52.1
Duzib084G0027 Durio zibethinus HOM05D006409 ORTHO05D008250 1.7e-69 267.3 389 47.6
Dinv38786 Davidia involucrata HOM05D006409 ORTHO05D008250 5.0e-69 265.8 343 50.7
Nitab4.5_0001961g0070 Nicotiana tabacum HOM05D006409 ORTHO05D008250 1.4e-68 264.2 341 50.4
Aqoxy3G03581 Aquilegia oxysepala HOM05D006409 ORTHO05D008250 1.9e-68 263.8 339 51.9
PGR083G0341 Punica granatum HOM05D006409 ORTHO05D008250 2.5e-68 263.5 349 51.6
FvH4_5g14277 Fragaria vesca HOM05D006409 ORTHO05D008250 6.1e-67 258.8 331 52.9
FAN13G1588 Fragaria x ananassa HOM05D006409 ORTHO05D008250 3.9e-66 256.1 334 51.8
FAN18G2755 Fragaria x ananassa HOM05D006409 ORTHO05D008250 6.7e-66 255.4 337 51.3
Oeu014392.1 Olea europaea HOM05D006409 ORTHO05D006262 3.3e-65 253.1 348 48.9
Cfa019299 Carpinus fangiana HOM05D006409 ORTHO05D008250 4.8e-64 249.2 340 47.6
Actinidia09250 Actinidia chinensis HOM05D006409 ORTHO05D008250 1.1e-63 248.1 348 48.6
Nitab4.5_0005160g0050 Nicotiana tabacum HOM05D006409 ORTHO05D008250 1.2e-62 244.6 344 47.4
CANSAT80G1113 Cannabis sativa HOM05D006409 ORTHO05D008250 1.7e-61 240.7 344 49.4
MSTRG.22971 Avicennia marina HOM05D006409 ORTHO05D008250 2.9e-61 240.0 341 46.6
PGSC0003DMG400012806 Solanum tuberosum HOM05D006409 ORTHO05D008250 4.2e-60 236.1 352 45.7
CARHR205310 Cardamine hirsuta HOM05D006409 ORTHO05D008250 1.2e-59 234.6 341 44.0
Nn4g23374 Nelumbo nucifera HOM05D006409 ORTHO05D008250 2.1e-59 233.8 375 45.9
Sopen12g016610 Solanum pennellii HOM05D006409 ORTHO05D008250 6.1e-59 232.3 337 46.0
Eucgr.B00571 Eucalyptus grandis HOM05D006409 ORTHO05D008250 1.4e-58 231.1 344 47.7
PSO302G0195 Papaver somniferum HOM05D006409 ORTHO05D008250 1.8e-58 230.7 387 43.4
Sp6g35060 Schrenkiella parvula HOM05D006409 ORTHO05D008250 3.9e-58 229.6 341 46.0
Cc00_g02320 Coffea canephora HOM05D006409 ORTHO05D008250 1.1e-57 228.0 337 45.7
Rhsim08G0148500 Rhododendron simsii HOM05D006409 ORTHO05D008250 2.0e-57 227.3 339 46.9
vmacro17591 Vaccinium macrocarpon HOM05D006409 ORTHO05D008250 3.3e-57 226.5 387 43.4
Atru.chr9.377 Acer truncatum HOM05D006409 ORTHO05D008250 1.3e-56 224.6 308 49.7
CAN.G172.10 Capsicum annuum HOM05D006409 ORTHO05D008250 1.3e-56 224.6 341 44.9
GSVIVG01007923001 Vitis vinifera HOM05D006409 ORTHO05D008250 2.8e-56 223.4 311 49.8
BcaC06g32511 Brassica carinata HOM05D001913 ORTHO05D008250 8.2e-56 221.9 336 46.4
C03p03950 Brassica napus HOM05D006409 ORTHO05D008250 8.2e-56 221.9 342 43.6
BolC3t12932H Brassica oleracea HOM05D006409 ORTHO05D008250 8.2e-56 221.9 342 43.6
RcHm_v2.0_Chr7g0182601 Rosa chinensis HOM05D006409 ORTHO05D008250 8.2e-56 221.9 337 47.8
THA.LOC104818336 Tarenaya hassleriana HOM05D006409 ORTHO05D008250 8.2e-56 221.9 342 44.7
AL6G18220 Arabidopsis lyrata HOM05D006409 ORTHO05D008250 1.1e-55 221.5 341 43.7
AT5G07890 Arabidopsis thaliana HOM05D006409 ORTHO05D008250 1.4e-55 221.1 341 42.8
Carub.0008s2186 Capsella rubella HOM05D006409 ORTHO05D008250 1.4e-55 221.1 339 43.7
TWI81G1094 Tripterygium wilfordii HOM05D006409 ORTHO05D008250 1.2e-54 218.0 341 46.3
FAN08G0388 Fragaria x ananassa HOM05D006409 ORTHO05D008250 2.6e-54 216.9 304 49.7
Gohir.D12G183500 Gossypium hirsutum HOM05D006409 ORTHO05D008250 2.6e-54 216.9 341 43.7
C09p68980 Brassica napus HOM05D006409 ORTHO05D006405 1.0e-53 214.9 341 44.3
COL.COLO4_22753 Corchorus olitorius HOM05D006409 ORTHO05D008250 1.0e-53 214.9 385 42.9
PSO478G4763 Papaver somniferum HOM05D006409 ORTHO05D008250 1.3e-53 214.5 388 41.5
Solyc12g036300.3 Solanum lycopersicum HOM05D006409 ORTHO05D008250 6.5e-53 212.2 337 43.6
MELO3C002015.2 Cucumis melo HOM05D006409 ORTHO05D008250 1.1e-52 211.5 340 44.4
Gorai.008G196800 Gossypium raimondii HOM05D006409 ORTHO05D008250 3.2e-52 209.9 335 43.6
PSO017G5610 Papaver somniferum HOM05D006409 ORTHO05D008250 5.5e-52 209.1 388 40.5
BolC9t59643H Brassica oleracea HOM05D006409 ORTHO05D008250 9.4e-52 208.4 346 44.2
CANSAT80G0413 Cannabis sativa HOM05D006409 ORTHO05D008250 9.4e-52 208.4 345 44.3
BcaB01g05645 Brassica carinata HOM05D006409 ORTHO05D008250 2.7e-51 206.8 337 44.5
A10p28660 Brassica napus HOM05D006409 ORTHO05D008250 3.6e-51 206.5 341 42.8
CsaV3_1G005860 Cucumis sativus L. HOM05D006409 ORTHO05D008250 3.6e-51 206.5 338 43.8
AL8G37860 Arabidopsis lyrata HOM05D006409 ORTHO05D008250 1.4e-50 204.5 342 42.4
BraA10t44915Z Brassica rapa HOM05D001913 ORTHO05D006405 1.8e-50 204.1 338 43.5
Gohir.A12G180800 Gossypium hirsutum HOM05D006409 ORTHO05D008250 4.0e-50 203.0 389 39.8
DCAR_026015 Daucus carota HOM05D006409 ORTHO05D008250 5.2e-50 202.6 358 43.0
AUR62021594 Chenopodium quinoa HOM05D006409 ORTHO05D008250 8.8e-50 201.8 345 42.3
Peaxi162Scf00106g00081 Petunia axillaris HOM05D006409 ORTHO05D008250 7.5e-49 198.7 341 41.9
Thhalv10013673m.g Eutrema salsugineum HOM05D006409 ORTHO05D008250 3.7e-48 196.4 339 40.7
ClCG04G011930 Citrullus lanatus HOM05D006409 ORTHO05D008250 3.1e-47 193.4 339 42.5
Carub.0006s0678 Capsella rubella HOM05D006409 ORTHO05D008250 9.1e-47 191.8 339 40.1
BcaNung06903 Brassica carinata HOM05D006409 ORTHO05D008250 1.0e-45 188.3 344 41.0
SalBow5G3762 Salvia bowleyana HOM05D006409 ORTHO05D008250 3.8e-45 186.4 364 39.0
CDE06G0998 Ceratophyllum demersum HOM05D006409 ORTHO05D008250 8.5e-45 185.3 346 39.9
HanXRQChr09g0270151 Helianthus annuus HOM05D006409 ORTHO05D008250 1.5e-44 184.5 383 36.0
Lj5A105T60 Lonicera japonica HOM05D006409 ORTHO05D008250 3.2e-44 183.3 283 46.6
ATR0064G033 Amborella trichopoda HOM05D006409 ORTHO05D008250 5.5e-44 182.6 396 37.6
Actinidia04843 Actinidia chinensis HOM05D006409 ORTHO05D008250 9.4e-44 181.8 222 50.5
A03p03510 Brassica napus HOM05D006409 ORTHO05D008250 6.1e-43 179.1 344 40.4
BraA03t09701Z Brassica rapa HOM05D006409 ORTHO05D008250 6.1e-43 179.1 344 40.4
Os07g0598700 Oryza sativa ssp. japonica HOM05D006409 ORTHO05D008250 6.1e-43 179.1 367 37.3
Zm00001eb108440 Zea mays HOM05D006409 ORTHO05D008250 8.0e-43 178.7 359 38.4
Ah.02g113920 Amaranthus hybridus HOM05D006409 ORTHO05D008250 3.4e-41 173.3 338 39.6
AUR62008498 Chenopodium quinoa HOM05D006409 ORTHO05D008250 4.4e-41 172.9 342 38.3
AT5G61200 Arabidopsis thaliana HOM05D006409 ORTHO05D008250 1.8e-39 167.5 339 37.8
Migut.I00315 Erythranthe guttata HOM05D006409 ORTHO05D008250 2.4e-39 167.2 346 38.4
C04p51620 Brassica napus HOM05D006409 ORTHO05D008250 3.1e-39 166.8 282 42.9
BcaC02g08700 Brassica carinata HOM05D006409 ORTHO05D008250 9.1e-39 165.2 347 37.8
Sc04g0003080 Simmondsia chinensis HOM05D006409 ORTHO05D008250 1.9e-36 157.5 331 37.8
Sed0008489 Sechium edule HOM05D006409 ORTHO05D008250 1.2e-35 154.8 339 39.2
ECA232G2526 Erigeron canadensis HOM05D006409 ORTHO05D008250 8.9e-34 148.7 341 34.0
HanXRQChr16g0502261 Helianthus annuus HOM05D006409 ORTHO05D008250 9.2e-31 138.7 338 33.1
BcaC02g08698 Brassica carinata HOM05D006409 ORTHO05D008250 1.2e-30 138.3 275 40.4
Hund02605 Selenicereus undatus HOM05D006409 ORTHO05D008250 2.9e-29 133.7 339 34.5
Glyma.01G017150 Glycine max HOM05D006409 ORTHO05D008250 1.1e-28 131.7 107 68.2
EL10Ac5g11100 Beta vulgaris HOM05D006409 ORTHO05D008250 2.4e-23 114.0 333 31.5
Lsat_1_v5_gn_4_110201 Lactuca sativa HOM05D006409 ORTHO05D008250 1.2e-19 101.7 353 28.0
BcaC02g08699 Brassica carinata HOM05D006409 ORTHO05D008250 2.8e-19 100.5 216 37.5
arahy.Tifrunner.gnm1.ann1.LPT8KM Arachis hypogaea HOM05D006409 ORTHO05D008250 1.4e-18 98.2 73 71.2
Duzib068G0538 Durio zibethinus HOM05D006409 ORTHO05D008250 6.8e-18 95.9 164 43.9
Actinidia12838 Actinidia chinensis HOM05D006409 ORTHO05D008250 4.4e-17 93.2 75 70.7
C04p51600 Brassica napus HOM05D006409 ORTHO05D008250 1.1e-15 88.6 79 63.3
C04p51590 Brassica napus HOM05D006409 ORTHO05D008250 1.2e-11 75.1 94 46.8
SEGI_28191 Sequoiadendron giganteum HOM05D006409 ORTHO05D008250 8.9e-10 68.9 374 25.1
SEGI_37085 Sequoiadendron giganteum HOM05D006409 ORTHO05D008250 8.9e-10 68.9 374 25.1
SGA_v2.0_scaffold25G10967 Striga asiatica HOM05D006409 ORTHO05D008250 1.2e-09 68.6 302 28.5
C04p51610 Brassica napus HOM05D006409 ORTHO05D008250 1.7e-08 64.7 162 35.2
arahy.Tifrunner.gnm1.ann1.TF9MBQ Arachis hypogaea HOM05D006409 ORTHO05D008250 3.7e-08 63.5 78 50.0
arahy.Tifrunner.gnm1.ann1.UPMP97 Arachis hypogaea HOM05D006409 ORTHO05D008250 8.4e-08 62.4 46 73.9


User provided reference genes

Program Settings