Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.L001601 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 3.4e-286 987.6 500 100.0
Phvul.L009001 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 9.9e-286 986.1 500 99.8
Phvul.003G000252 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 7.1e-284 979.9 500 99.6
VMungo0251G0454 Vigna mungo HOM05D003643 ORTHO05D005001 6.7e-266 920.2 500 93.6
Glyma.07G222900 Glycine max HOM05D003643 ORTHO05D005001 2.0e-254 882.1 491 90.2
Glyma.20G021900 Glycine max HOM05D003643 ORTHO05D005001 7.2e-252 873.6 495 89.3
Lj1g0022937 Lotus japonicus HOM05D003643 ORTHO05D005001 3.9e-242 841.3 500 84.0
Lj1g0023184 Lotus japonicus HOM05D003643 ORTHO05D005001 8.8e-242 840.1 500 84.0
Ca_18772_v3 Cicer arietinum L. HOM05D003643 ORTHO05D005001 2.4e-239 832.0 503 82.9
Psat0s5231g0040 Pisum sativum HOM05D003643 ORTHO05D005001 3.2e-236 821.6 500 83.2
arahy.Tifrunner.gnm1.ann1.PVMC8E Arachis hypogaea HOM05D003643 ORTHO05D005001 8.8e-234 813.5 498 81.7
Cfa023544 Carpinus fangiana HOM05D003643 ORTHO05D005001 2.0e-233 812.4 488 82.6
Cpa.g.sc178.8 Carica papaya HOM05D003643 ORTHO05D005001 1.3e-232 809.7 499 81.6
Lalb_Chr16g0385301 Lupinus albus HOM05D003643 ORTHO05D005001 1.1e-231 806.6 501 81.6
Atru.chr1.1970 Acer truncatum HOM05D003643 ORTHO05D005001 2.0e-230 802.4 493 81.5
CiPaw.03G114100 Carya illinoinensis HOM05D003643 ORTHO05D005001 2.6e-230 802.0 495 80.8
Psat6g043080 Pisum sativum HOM05D003643 ORTHO05D005001 1.0e-229 800.0 500 81.4
TPR.G20995 Trifolium pratense HOM05D003643 ORTHO05D005001 1.1e-228 796.6 495 80.6
MD05G1254800 Malus domestica HOM05D003643 ORTHO05D005001 2.7e-227 792.0 504 78.8
Potri.004G075600 Populus trichocarpa HOM05D003643 ORTHO05D005001 8.0e-227 790.4 502 79.9
Dinv35809 Davidia involucrata HOM05D003643 ORTHO05D005001 3.0e-226 788.5 489 81.4
TWI77G0757 Tripterygium wilfordii HOM05D003643 ORTHO05D005001 1.2e-225 786.6 495 81.2
MD10G1234900 Malus domestica HOM05D003643 ORTHO05D005001 4.4e-225 784.6 492 79.1
Lj1g0023481 Lotus japonicus HOM05D003643 ORTHO05D005001 2.2e-224 782.3 500 79.6
Prupe.4G109100 Prunus persica HOM05D003643 ORTHO05D005001 1.8e-223 779.2 480 80.2
Medtr4g083780 Medicago truncatula HOM05D003643 ORTHO05D005001 2.4e-223 778.9 491 80.2
PGR083G1065 Punica granatum HOM05D003643 ORTHO05D005001 2.4e-223 778.9 497 79.1
Sed0017297 Sechium edule HOM05D003643 ORTHO05D005001 1.6e-222 776.2 482 80.5
CANSAT21G2447 Cannabis sativa HOM05D003643 ORTHO05D005001 5.0e-221 771.2 495 78.6
Eucgr.D01040 Eucalyptus grandis HOM05D003643 ORTHO05D005001 5.0e-221 771.2 509 76.4
arahy.Tifrunner.gnm1.ann1.EU78CH Arachis hypogaea HOM05D003643 ORTHO05D005001 1.5e-220 769.6 498 78.9
GSVIVG01012096001 Vitis vinifera HOM05D003643 ORTHO05D005001 1.5e-220 769.6 481 80.2
CsaV3_1G046560 Cucumis sativus L. HOM05D003643 ORTHO05D005001 1.9e-220 769.2 484 80.2
Actinidia22386 Actinidia chinensis HOM05D003643 ORTHO05D005001 2.5e-220 768.8 499 77.6
Oeu060347.1 Olea europaea HOM05D003643 ORTHO05D005001 3.2e-220 768.5 480 79.2
Sabra04G0050300 Salix brachista HOM05D003643 ORTHO05D005001 7.2e-220 767.3 503 78.1
CSS0044821 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D005001 2.1e-219 765.8 499 76.8
THA.LOC104822105 Tarenaya hassleriana HOM05D003643 ORTHO05D005001 2.7e-219 765.4 488 78.3
Cc09_g06330 Coffea canephora HOM05D003643 ORTHO05D005001 2.3e-218 762.3 496 78.0
FvH4_3g12070 Fragaria vesca HOM05D003643 ORTHO05D005001 3.0e-218 761.9 485 78.4
Sc22g0000430 Simmondsia chinensis HOM05D003643 ORTHO05D005001 1.2e-217 760.0 487 78.0
FAN21G1938 Fragaria x ananassa HOM05D003643 ORTHO05D005001 1.5e-217 759.6 485 77.9
RcHm_v2.0_Chr5g0019781 Rosa chinensis HOM05D003643 ORTHO05D005001 1.5e-217 759.6 485 77.9
MELO3C021772.2 Cucumis melo HOM05D003643 ORTHO05D005001 4.4e-217 758.1 484 79.3
Migut.M01969 Erythranthe guttata HOM05D003643 ORTHO05D005001 5.7e-217 757.7 488 77.0
Lj1C1143T1 Lonicera japonica HOM05D003643 ORTHO05D005001 5.7e-217 757.7 492 77.2
FAN25G0143 Fragaria x ananassa HOM05D003643 ORTHO05D005001 1.3e-216 756.5 485 77.7
SGA_v2.0_scaffold298G47674 Striga asiatica HOM05D003643 ORTHO05D005001 2.8e-216 755.4 505 75.0
Gohir.D10G121400 Gossypium hirsutum HOM05D003643 ORTHO05D005001 5.4e-215 751.1 500 77.0
Gorai.011G133500 Gossypium raimondii HOM05D003643 ORTHO05D005001 5.4e-215 751.1 500 77.0
Thecc.04G162500 Theobroma cacao HOM05D003643 ORTHO05D005001 5.4e-215 751.1 488 78.7
TAR365G0076 Trochodendron aralioides HOM05D003643 ORTHO05D005001 7.0e-215 750.7 481 78.4
Lsat_1_v5_gn_5_36401 Lactuca sativa HOM05D003643 ORTHO05D005001 2.0e-214 749.2 481 78.0
Duzib268G1178 Durio zibethinus HOM05D003643 ORTHO05D005001 4.5e-214 748.0 490 77.3
Solyc02g069120.3 Solanum lycopersicum HOM05D003643 ORTHO05D005001 4.5e-214 748.0 488 76.0
COL.COLO4_08070 Corchorus olitorius HOM05D003643 ORTHO05D005001 5.9e-214 747.7 528 73.5
Nitab4.5_0002056g0030 Nicotiana tabacum HOM05D003643 ORTHO05D005001 7.7e-214 747.3 496 75.2
Sopen02g018250 Solanum pennellii HOM05D003643 ORTHO05D005001 2.9e-213 745.3 488 75.8
PGSC0003DMG400010363 Solanum tuberosum HOM05D003643 ORTHO05D005001 5.0e-213 744.6 488 75.8
HanXRQChr07g0189641 Helianthus annuus HOM05D003643 ORTHO05D005001 6.6e-213 744.2 481 77.3
CAN.G1222.6 Capsicum annuum HOM05D003643 ORTHO05D005001 3.3e-212 741.9 487 75.6
vmacro11251 Vaccinium macrocarpon HOM05D003643 ORTHO05D005001 4.2e-212 741.5 514 74.3
BcaB01g04707 Brassica carinata HOM05D003643 ORTHO05D005001 7.2e-212 740.7 492 75.0
Thhalv10013358m.g Eutrema salsugineum HOM05D003643 ORTHO05D005001 1.4e-210 736.5 495 75.4
Sp6g22770 Schrenkiella parvula HOM05D003643 ORTHO05D005001 1.8e-210 736.1 492 75.8
BcaC04g19578 Brassica carinata HOM05D003643 ORTHO05D005001 8.9e-210 733.8 491 74.5
A10p18340 Brassica napus HOM05D003643 ORTHO05D005001 8.9e-210 733.8 491 74.3
HanXRQChr14g0433091 Helianthus annuus HOM05D003643 ORTHO05D005001 1.2e-209 733.4 487 74.9
Carub.0006s2022 Capsella rubella HOM05D003643 ORTHO05D005001 1.5e-209 733.0 499 74.3
AT5G22480 Arabidopsis thaliana HOM05D003643 ORTHO05D005001 2.6e-209 732.3 493 74.2
C09p54110 Brassica napus HOM05D003643 ORTHO05D005001 3.4e-209 731.9 491 74.1
BolC9t58281H Brassica oleracea HOM05D003643 ORTHO05D005001 3.4e-209 731.9 491 74.1
BraA10t43914Z Brassica rapa HOM05D003643 ORTHO05D005001 4.4e-209 731.5 491 74.1
BcaC01g06578 Brassica carinata HOM05D003643 ORTHO05D005001 7.5e-209 730.7 491 73.7
BcaC07g37705 Brassica carinata HOM05D003643 ORTHO05D005001 7.5e-209 730.7 492 74.6
AL6G33500 Arabidopsis lyrata HOM05D003643 ORTHO05D005001 1.3e-208 729.9 492 75.0
AL7G45920 Arabidopsis lyrata HOM05D003643 ORTHO05D005001 2.8e-208 728.8 482 75.7
BcaB08g36427 Brassica carinata HOM05D003643 ORTHO05D005001 3.7e-208 728.4 503 73.2
SpUn0005_0160 Schrenkiella parvula HOM05D003643 ORTHO05D005001 3.7e-208 728.4 493 74.6
FAN16G1159 Fragaria x ananassa HOM05D003643 ORTHO05D005001 6.3e-208 727.6 485 75.9
BcaB04g18097 Brassica carinata HOM05D003643 ORTHO05D005001 1.1e-207 726.9 490 74.7
AT5G37340 Arabidopsis thaliana HOM05D003643 ORTHO05D005001 1.4e-207 726.5 492 74.8
A08p10150 Brassica napus HOM05D003643 ORTHO05D005001 1.4e-207 726.5 492 74.2
CARHR215770 Cardamine hirsuta HOM05D003643 ORTHO05D005001 1.4e-207 726.5 491 74.5
BraA08t33014Z Brassica rapa HOM05D003643 ORTHO05D005001 2.4e-207 725.7 496 74.0
CARHR191050 Cardamine hirsuta HOM05D003643 ORTHO05D005001 4.1e-207 724.9 490 73.9
Thhalv10027733m.g Eutrema salsugineum HOM05D003643 ORTHO05D005001 4.1e-207 724.9 492 73.8
SalBow8G4557 Salvia bowleyana HOM05D003643 ORTHO05D005001 4.1e-207 724.9 492 74.2
SalBow8G5428 Salvia bowleyana HOM05D003643 ORTHO05D005001 4.1e-207 724.9 492 74.2
A03p10790 Brassica napus HOM05D003643 ORTHO05D005001 5.4e-207 724.5 491 73.5
ECA238G3555 Erigeron canadensis HOM05D003643 ORTHO05D005001 3.5e-206 721.8 494 73.5
AUR62010551 Chenopodium quinoa HOM05D003643 ORTHO05D005001 5.9e-206 721.1 487 74.3
BraA03t10388Z Brassica rapa HOM05D003643 ORTHO05D005001 1.7e-205 719.5 502 72.1
BolC3t13712H Brassica oleracea HOM05D003643 ORTHO05D005001 2.9e-205 718.8 494 72.9
Rhsim04G0157300 Rhododendron simsii HOM05D003643 ORTHO05D005001 2.9e-205 718.8 516 73.1
ECA246G0187 Erigeron canadensis HOM05D003643 ORTHO05D005001 1.5e-204 716.5 498 74.3
unitig_32.g11672 Utricularia gibba HOM05D003643 ORTHO05D005001 2.5e-204 715.7 489 73.2
Nn7g37591 Nelumbo nucifera HOM05D003643 ORTHO05D005001 5.2e-202 708.0 484 72.5
Oeu052674.3 Olea europaea HOM05D003643 ORTHO05D005001 7.5e-201 704.1 456 76.8
Phvul.003G000226 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 1.9e-199 699.5 349 100.0
DCAR_007797 Daucus carota HOM05D003643 ORTHO05D005001 3.2e-199 698.7 483 73.7
Hund14697 Selenicereus undatus HOM05D003643 ORTHO05D005001 1.0e-197 693.7 506 69.6
TPR.G20778 Trifolium pratense HOM05D003643 ORTHO05D005001 1.0e-197 693.7 485 73.6
CDE02G0779 Ceratophyllum demersum HOM05D003643 ORTHO05D005001 3.0e-197 692.2 482 71.0
AUR62017342 Chenopodium quinoa HOM05D003643 ORTHO05D005001 8.6e-197 690.6 457 75.3
SGA_v2.0_scaffold95G28766 Striga asiatica HOM05D003643 ORTHO05D005001 1.6e-195 686.4 509 69.5
TPR.G9485 Trifolium pratense HOM05D003643 ORTHO05D005001 9.8e-193 677.2 471 74.3
Zm00001eb058120 Zea mays HOM05D003643 ORTHO05D005001 1.3e-192 676.8 488 68.2
EL10Ac5g12673 Beta vulgaris HOM05D003643 ORTHO05D005001 6.4e-192 674.5 573 63.7
Hund01937 Selenicereus undatus HOM05D003643 ORTHO05D005001 2.4e-191 672.5 488 68.9
ATR0743G136 Amborella trichopoda HOM05D003643 ORTHO05D005001 5.4e-191 671.4 492 68.7
MBI07_g18519_MAGBIO Magnolia biondii HOM05D003643 ORTHO05D005001 7.8e-190 667.5 490 69.6
Ca_20206_v3 Cicer arietinum L. HOM05D003643 ORTHO05D005001 8.6e-189 664.1 494 69.8
Manes.01G122000 Manihot esculenta HOM05D003643 ORTHO05D005001 1.5e-188 663.3 498 70.5
Aa31LG9G17620 Aethionema arabicum HOM05D003643 ORTHO05D005001 9.5e-188 660.6 519 67.2
Os08g0471900 Oryza sativa ssp. japonica HOM05D003643 ORTHO05D005001 2.8e-187 659.1 468 69.4
HPP92_015903 Vanilla planifolia HOM05D003643 ORTHO05D005001 9.9e-185 650.6 483 67.7
PSO675G9021 Papaver somniferum HOM05D003643 ORTHO05D005001 2.9e-184 649.0 491 67.0
Pp3c15_5070 Physcomitrium patens HOM05D003643 ORTHO05D005001 6.4e-184 647.9 490 64.3
Mapoly0085s0072 Marchantia polymorpha HOM05D003643 ORTHO05D005001 2.4e-183 646.0 498 63.9
Phvul.002G099300 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 2.1e-182 642.9 403 85.6
Peaxi162Scf00128g01142 Petunia axillaris HOM05D003643 ORTHO05D005001 7.3e-180 634.4 492 67.9
Nitab4.5_0002463g0030 Nicotiana tabacum HOM05D003643 ORTHO05D005001 1.1e-178 630.6 496 66.9
Lsat_1_v5_gn_2_29841 Lactuca sativa HOM05D003643 ORTHO05D005001 3.1e-178 629.0 488 67.4
Aqoxy5G01635 Aquilegia oxysepala HOM05D003643 ORTHO05D005001 1.1e-175 620.5 495 63.6
CSS0005005 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D005001 2.4e-175 619.4 403 77.4
Phvul.L001739 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 7.6e-169 597.8 410 80.2
Nitab4.5_0004569g0010 Nicotiana tabacum HOM05D003643 ORTHO05D005001 1.4e-167 593.6 503 64.0
SMO203G0021 Selaginella moellendorffii HOM05D003643 ORTHO05D005001 7.3e-164 581.3 458 62.7
CBR_g6566 Chara braunii HOM05D003643 ORTHO05D005001 2.2e-160 569.7 506 58.1
Ciclev10003667m.g Citrus clementina HOM05D003643 ORTHO05D005001 1.3e-157 560.5 375 77.3
ClCG01G009340 Citrullus lanatus HOM05D003643 ORTHO05D005001 4.8e-155 552.0 356 79.5
Phvul.003G000304 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 4.8e-155 552.0 295 96.3
CBR_g34896 Chara braunii HOM05D003643 ORTHO05D005001 1.4e-154 550.4 497 57.5
Phvul.003G000330 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 5.8e-153 545.0 272 99.6
Gohir.1Z049309 Gossypium hirsutum HOM05D003643 ORTHO05D005001 4.9e-152 542.0 361 77.0
QL07p008150 Quercus lobata HOM05D003643 ORTHO05D005001 1.1e-148 530.8 553 54.6
PSO017G1140 Papaver somniferum HOM05D003643 ORTHO05D005001 4.0e-146 522.3 407 66.6
Ah.12g057940 Amaranthus hybridus HOM05D003643 ORTHO05D005001 1.0e-144 517.7 389 69.7
BolC8t48076H Brassica oleracea HOM05D003643 ORTHO05D005001 1.3e-144 517.3 364 73.6
Peaxi162Scf00149g01022 Petunia axillaris HOM05D003643 ORTHO05D005001 1.0e-136 491.1 357 71.4
Gohir.1Z049318 Gossypium hirsutum HOM05D003643 ORTHO05D005001 1.3e-128 464.2 309 77.0
CBR_g6568 Chara braunii HOM05D003643 ORTHO05D005001 3.0e-125 453.0 471 51.6
C03p12370 Brassica napus HOM05D003643 ORTHO05D005001 5.3e-122 442.2 358 64.5
Haze_13620 Corylus avellana HOM05D003643 ORTHO05D005001 2.6e-121 439.9 276 80.8
Phvul.003G000278 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 1.3e-104 384.4 193 98.4
Phvul.L008901 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 3.5e-97 359.8 184 99.5
Actinidia36045 Actinidia chinensis HOM05D003643 ORTHO05D005001 4.1e-90 336.3 229 73.8
Atru.chr3.103 Acer truncatum HOM05D003643 ORTHO05D005001 5.2e-85 319.3 252 68.7
Cfa025656 Carpinus fangiana HOM05D003643 ORTHO05D005001 1.2e-81 308.1 477 38.4
DCAR_017792 Daucus carota HOM05D003643 ORTHO05D005001 2.4e-74 283.9 204 72.5
SEGI_34727 Sequoiadendron giganteum HOM05D003643 ORTHO05D005001 6.0e-65 252.7 200 64.5
Psat3g171960 Pisum sativum HOM05D003643 ORTHO05D005001 9.6e-63 245.4 231 59.7
Psat6g162200 Pisum sativum HOM05D003643 ORTHO05D005001 1.1e-58 231.9 327 45.3
Lsat_1_v5_gn_5_36361 Lactuca sativa HOM05D003643 ORTHO05D018815 8.1e-54 215.7 133 78.9
ClCG01G009350 Citrullus lanatus HOM05D003643 ORTHO05D005001 5.3e-53 213.0 127 81.1
Phvul.L001639 Phaseolus vulgaris HOM05D003643 ORTHO05D034905 1.7e-51 208.0 99 99.0
Phvul.L008801 Phaseolus vulgaris HOM05D003643 ORTHO05D034905 1.7e-51 208.0 99 99.0
Atru.chr8.2585 Acer truncatum HOM05D003643 ORTHO05D005001 2.2e-51 207.6 153 71.2
BolC8t48075H Brassica oleracea HOM05D003643 ORTHO05D018815 6.4e-51 206.1 137 71.5
Atru.chr8.2696 Acer truncatum HOM05D003643 ORTHO05D005001 1.7e-48 198.0 263 49.0
Peaxi162Scf00149g01017 Petunia axillaris HOM05D003643 ORTHO05D018815 1.9e-47 194.5 139 68.3
CSS0009011 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D005001 4.3e-47 193.4 114 80.7
CSS0015856 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D005001 1.6e-41 174.9 114 74.6
ATR0712G001 Amborella trichopoda HOM05D003643 ORTHO05D023464 5.1e-40 169.9 127 66.9
CBR_g12037 Chara braunii HOM05D003643 ORTHO05D005001 2.1e-33 147.9 207 43.0
Haze_13619 Corylus avellana HOM05D003643 ORTHO05D034905 3.2e-26 124.0 105 62.9
Lsat_1_v5_gn_5_135000 Lactuca sativa HOM05D003643 ORTHO05D005001 5.1e-24 116.7 97 64.9
Cc11_g00920 Coffea canephora HOM05D003643 ORTHO05D005001 2.5e-23 114.4 67 82.1
Psat0s3903g0040 Pisum sativum HOM05D003643 ORTHO05D005001 2.4e-21 107.8 65 87.7
Lsat_1_v5_gn_5_54460 Lactuca sativa HOM05D003643 ORTHO05D005001 5.3e-21 106.7 189 40.2
Haze_13621 Corylus avellana HOM05D003643 ORTHO05D018815 9.0e-21 105.9 72 70.8
ClCG01G009330 Citrullus lanatus HOM05D003643 ORTHO05D018815 2.6e-20 104.4 60 80.0
Gohir.A10G145401 Gossypium hirsutum HOM05D003643 ORTHO05D018815 7.7e-20 102.8 69 69.6
CSS0030804 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D023464 8.5e-19 99.4 65 75.4
CSS0023685 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D018815 7.2e-18 96.3 74 62.2
CSS0024414 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D023464 7.2e-18 96.3 65 72.3
CSS0049868 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D023464 7.2e-18 96.3 65 72.3
CSS0012788 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D023464 5.7e-15 86.7 77 61.0
CSS0032340 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D018815 1.3e-11 75.5 46 69.6
HanXRQChr06g0180401 Helianthus annuus HOM05D003643 ORTHO05D005001 1.1e-10 72.4 38 84.2
RcHm_v2.0_Chr5g0019801 Rosa chinensis HOM05D003643 ORTHO05D005001 5.7e-07 60.1 48 75.0


User provided reference genes

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