Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.L001232 Phaseolus vulgaris HOM05D004534 ORTHO05D005413 1.3e-224 782.7 378 100.0
Glyma.13G330000 Glycine max HOM05D004534 ORTHO05D005413 1.3e-205 719.5 378 91.0
VMungo1080G0465 Vigna mungo HOM05D004534 ORTHO05D005413 1.0e-202 709.9 378 90.5
Lalb_Chr24g0394391 Lupinus albus HOM05D004534 ORTHO05D005413 1.6e-179 632.9 380 80.3
TPR.G11635 Trifolium pratense HOM05D004534 ORTHO05D005413 1.8e-178 629.4 382 79.8
Medtr2g095830 Medicago truncatula HOM05D004534 ORTHO05D005413 3.7e-176 621.7 384 79.7
Psat5g281360 Pisum sativum HOM05D004534 ORTHO05D005413 1.4e-175 619.8 385 79.0
Ca_01369_v3 Cicer arietinum L. HOM05D004534 ORTHO05D005413 5.9e-174 614.4 368 80.4
Lj3g0025326 Lotus japonicus HOM05D004534 ORTHO05D005413 5.5e-172 607.8 384 78.6
arahy.Tifrunner.gnm1.ann1.NM19P7 Arachis hypogaea HOM05D004534 ORTHO05D005413 2.9e-165 585.5 343 80.5
arahy.Tifrunner.gnm1.ann1.AW7LWX Arachis hypogaea HOM05D004534 ORTHO05D005413 1.5e-164 583.2 373 75.6
GSVIVG01025090001 Vitis vinifera HOM05D004534 ORTHO05D005413 1.2e-153 547.0 366 72.1
MD11G1120100 Malus domestica HOM05D004534 ORTHO05D005413 2.9e-152 542.3 368 71.7
THA.LOC104814850 Tarenaya hassleriana HOM05D004534 ORTHO05D005413 1.0e-149 533.9 368 69.0
Manes.11G138500 Manihot esculenta HOM05D004534 ORTHO05D005413 1.5e-148 530.0 361 70.4
Atru.chr3.3749 Acer truncatum HOM05D004534 ORTHO05D005413 3.3e-148 528.9 361 70.1
Cfa011397 Carpinus fangiana HOM05D004534 ORTHO05D005413 2.1e-147 526.2 346 72.8
TWI31G1398 Tripterygium wilfordii HOM05D004534 ORTHO05D005413 2.1e-147 526.2 359 71.3
Dinv32819 Davidia involucrata HOM05D004534 ORTHO05D005413 3.6e-147 525.4 375 69.3
CANSAT54G1456 Cannabis sativa HOM05D004534 ORTHO05D005413 6.2e-147 524.6 373 68.1
Thhalv10002577m.g Eutrema salsugineum HOM05D004534 ORTHO05D005413 6.2e-147 524.6 369 68.8
Ciclev10030338m.g Citrus clementina HOM05D004534 ORTHO05D005413 8.1e-147 524.2 357 71.1
Cpa.g.sc139.34 Carica papaya HOM05D004534 ORTHO05D005413 1.8e-146 523.1 364 68.1
PGR102G1844 Punica granatum HOM05D004534 ORTHO05D005413 2.3e-146 522.7 365 68.8
QL01p035546 Quercus lobata HOM05D004534 ORTHO05D005413 3.1e-146 522.3 369 70.2
FvH4_3g34110 Fragaria vesca HOM05D004534 ORTHO05D005413 5.8e-145 518.1 389 65.6
Hma1.2p1_2042F.1_g312230 Hydrangea macrophylla HOM05D004534 ORTHO05D005413 3.7e-144 515.4 358 72.9
FAN11G3381 Fragaria x ananassa HOM05D004534 ORTHO05D005413 4.9e-144 515.0 389 65.3
AL5G24380 Arabidopsis lyrata HOM05D004534 ORTHO05D005413 6.4e-144 514.6 357 70.0
RcHm_v2.0_Chr5g0061761 Rosa chinensis HOM05D004534 ORTHO05D005413 8.3e-144 514.2 388 65.2
AT3G45740 Arabidopsis thaliana HOM05D004534 ORTHO05D005413 1.1e-143 513.8 358 70.1
Sp5g15770 Schrenkiella parvula HOM05D004534 ORTHO05D005413 1.4e-143 513.5 357 68.9
CSS0009646 Camellia sinensis var. sinensis HOM05D004534 ORTHO05D005413 2.4e-143 512.7 356 69.9
Rhsim01G0222900 Rhododendron simsii HOM05D004534 ORTHO05D005413 2.4e-143 512.7 370 67.0
Sed0013966 Sechium edule HOM05D004534 ORTHO05D005413 2.4e-143 512.7 384 65.9
Potri.010G216000 Populus trichocarpa HOM05D004534 ORTHO05D005413 7.1e-143 511.1 370 67.0
BolC3t19273H Brassica oleracea HOM05D004534 ORTHO05D005413 9.2e-143 510.8 359 68.8
Nn2g10612 Nelumbo nucifera HOM05D004534 ORTHO05D005413 9.2e-143 510.8 372 67.2
BcaC01g01956 Brassica carinata HOM05D004534 ORTHO05D005413 2.1e-142 509.6 359 68.8
C03p70180 Brassica napus HOM05D004534 ORTHO05D005413 2.1e-142 509.6 359 68.8
Aa31LG4G14970 Aethionema arabicum HOM05D004534 ORTHO05D005413 2.7e-142 509.2 365 66.8
MELO3C026849.2 Cucumis melo HOM05D004534 ORTHO05D005413 2.7e-142 509.2 364 67.3
Cfa001577 Carpinus fangiana HOM05D004534 ORTHO05D005413 6.0e-142 508.1 359 67.4
CsaV3_1G012750 Cucumis sativus L. HOM05D004534 ORTHO05D005413 6.0e-142 508.1 384 64.8
CARHR149920 Cardamine hirsuta HOM05D004534 ORTHO05D005413 1.0e-141 507.3 355 68.5
PGSC0003DMG402006611 Solanum tuberosum HOM05D004534 ORTHO05D005413 1.3e-141 506.9 377 66.6
GSVIVG01016358001 Vitis vinifera HOM05D004534 ORTHO05D005413 1.7e-141 506.5 351 69.2
A06p21280 Brassica napus HOM05D004534 ORTHO05D005413 3.0e-141 505.8 359 69.1
BraA06t25216Z Brassica rapa HOM05D004534 ORTHO05D005413 3.0e-141 505.8 359 69.1
RcHm_v2.0_Chr1g0364391 Rosa chinensis HOM05D004534 ORTHO05D005413 3.3e-140 502.3 378 65.3
FAN21G3213 Fragaria x ananassa HOM05D004534 ORTHO05D005413 5.6e-140 501.5 400 62.8
Peaxi162Scf00072g00025 Petunia axillaris HOM05D004534 ORTHO05D005413 9.5e-140 500.7 345 70.7
Solyc06g075540.3 Solanum lycopersicum HOM05D004534 ORTHO05D005413 2.1e-139 499.6 351 68.9
PSO384G4947 Papaver somniferum HOM05D004534 ORTHO05D005413 3.6e-139 498.8 358 68.2
Lsat_1_v5_gn_8_20980 Lactuca sativa HOM05D004534 ORTHO05D005413 4.7e-139 498.4 345 69.0
Prupe.2G220600 Prunus persica HOM05D004534 ORTHO05D005413 4.7e-139 498.4 364 66.5
Nitab4.5_0000270g0130 Nicotiana tabacum HOM05D004534 ORTHO05D005413 6.2e-139 498.0 370 67.6
PSO339G4951 Papaver somniferum HOM05D004534 ORTHO05D005413 6.2e-139 498.0 375 66.7
DCAR_018857 Daucus carota HOM05D004534 ORTHO05D005413 1.4e-138 496.9 353 67.1
Potri.008G045700 Populus trichocarpa HOM05D004534 ORTHO05D005413 1.4e-138 496.9 370 64.9
Nitab4.5_0004774g0020 Nicotiana tabacum HOM05D004534 ORTHO05D005413 3.1e-138 495.7 342 71.3
vmacro14490 Vaccinium macrocarpon HOM05D004534 ORTHO05D005413 1.2e-137 493.8 444 58.3
Thecc.09G335300 Theobroma cacao HOM05D004534 ORTHO05D005413 1.5e-137 493.4 370 64.9
CiPaw.01G277800 Carya illinoinensis HOM05D004534 ORTHO05D005413 2.0e-137 493.0 357 66.1
Actinidia03016 Actinidia chinensis HOM05D004534 ORTHO05D005413 5.8e-137 491.5 356 67.1
ECA233G2770 Erigeron canadensis HOM05D004534 ORTHO05D000452 2.2e-136 489.6 359 65.7
CAN.G394.3 Capsicum annuum HOM05D004534 ORTHO05D005413 8.4e-136 487.6 363 67.2
Gohir.A08G000096 Gossypium hirsutum HOM05D004534 ORTHO05D005413 8.4e-136 487.6 372 65.3
Gohir.D08G009000 Gossypium hirsutum HOM05D004534 ORTHO05D005413 4.1e-135 485.3 372 64.8
Ciclev10031838m.g Citrus clementina HOM05D004534 ORTHO05D005413 7.1e-135 484.6 378 63.2
HanXRQChr08g0219701 Helianthus annuus HOM05D004534 ORTHO05D005413 9.2e-135 484.2 359 67.4
ATR0582G124 Amborella trichopoda HOM05D004534 ORTHO05D005413 1.2e-134 483.8 359 64.1
FAN06G4936 Fragaria x ananassa HOM05D004534 ORTHO05D005413 1.2e-134 483.8 389 61.4
Zm00001eb397220 Zea mays HOM05D004534 ORTHO05D005413 1.2e-134 483.8 356 63.2
CSS0028612 Camellia sinensis var. sinensis HOM05D004534 ORTHO05D005413 4.6e-134 481.9 381 62.2
Thecc.10G065400 Theobroma cacao HOM05D004534 ORTHO05D005413 7.8e-134 481.1 381 63.0
Dinv31374 Davidia involucrata HOM05D004534 ORTHO05D005413 1.0e-133 480.7 345 67.5
MSTRG.18620 Avicennia marina HOM05D004534 ORTHO05D005413 1.7e-133 479.9 352 66.2
Haze_16951 Corylus avellana HOM05D004534 ORTHO05D005413 5.1e-133 478.4 359 64.9
Gorai.009G315700 Gossypium raimondii HOM05D004534 ORTHO05D005413 6.6e-133 478.0 381 61.7
Os03g0284500 Oryza sativa ssp. japonica HOM05D004534 ORTHO05D005413 3.3e-132 475.7 356 62.4
Gohir.D05G298500 Gossypium hirsutum HOM05D004534 ORTHO05D005413 4.3e-132 475.3 381 61.4
HPP92_003600 Vanilla planifolia HOM05D004534 ORTHO05D005413 9.6e-132 474.2 355 63.4
TWI38G2053 Tripterygium wilfordii HOM05D004534 ORTHO05D005413 1.2e-131 473.8 381 62.5
COL.COLO4_23775 Corchorus olitorius HOM05D004534 ORTHO05D005413 4.7e-131 471.9 348 65.5
Migut.D02166 Erythranthe guttata HOM05D004534 ORTHO05D005413 8.1e-131 471.1 356 64.3
PGR044G2491 Punica granatum HOM05D004534 ORTHO05D005413 8.1e-131 471.1 359 63.0
MD07G1181700 Malus domestica HOM05D004534 ORTHO05D005413 1.8e-130 469.9 357 63.6
Cc01_g11880 Coffea canephora HOM05D004534 ORTHO05D005413 5.2e-130 468.4 367 63.8
Atru.chr12.616 Acer truncatum HOM05D004534 ORTHO05D005413 1.5e-129 466.8 408 58.3
Aqoxy4G03153 Aquilegia oxysepala HOM05D004534 ORTHO05D005413 4.4e-129 465.3 352 64.2
EL10Ac7g15886 Beta vulgaris HOM05D004534 ORTHO05D005413 1.3e-128 463.8 432 56.7
CsaV3_5G026040 Cucumis sativus L. HOM05D004534 ORTHO05D005413 1.2e-126 457.2 371 62.5
Migut.F02016 Erythranthe guttata HOM05D004534 ORTHO05D005413 4.6e-126 455.3 347 63.1
Peaxi162Scf01024g00128 Petunia axillaris HOM05D004534 ORTHO05D005413 2.3e-125 453.0 386 58.5
CDE04G1344 Ceratophyllum demersum HOM05D004534 ORTHO05D005413 3.0e-125 452.6 376 60.4
BcaB01g01071 Brassica carinata HOM05D004534 ORTHO05D005413 8.7e-125 451.1 315 69.2
FAN25G2491 Fragaria x ananassa HOM05D004534 ORTHO05D005413 1.9e-124 449.9 421 57.0
Hund18962 Selenicereus undatus HOM05D004534 ORTHO05D005413 2.8e-123 446.0 363 60.9
unitig_37.g12680 Utricularia gibba HOM05D004534 ORTHO05D005413 3.1e-122 442.6 353 62.0
EL10Ac2g03539 Beta vulgaris HOM05D004534 ORTHO05D005413 6.9e-122 441.4 363 59.2
AUR62009701 Chenopodium quinoa HOM05D004534 ORTHO05D005413 2.0e-121 439.9 344 64.2
CSS0050279 Camellia sinensis var. sinensis HOM05D004534 ORTHO05D005413 3.4e-121 439.1 374 61.5
FAN03G3228 Fragaria x ananassa HOM05D004534 ORTHO05D005413 7.6e-121 438.0 408 55.6
Lj1A180G32 Lonicera japonica HOM05D004534 ORTHO05D005413 5.4e-119 431.8 311 68.8
Gorai.004G002200 Gossypium raimondii HOM05D004534 ORTHO05D005413 7.1e-119 431.4 326 65.3
Sabra08G0032000 Salix brachista HOM05D004534 ORTHO05D005413 6.0e-118 428.3 361 59.0
FAN01G1783 Fragaria x ananassa HOM05D004534 ORTHO05D005413 1.8e-117 426.8 411 54.3
AUR62036245 Chenopodium quinoa HOM05D004534 ORTHO05D005413 6.7e-117 424.9 363 60.9
MELO3C025495.2 Cucumis melo HOM05D004534 ORTHO05D005413 6.7e-117 424.9 368 60.1
Sabra10G0167000 Salix brachista HOM05D004534 ORTHO05D005413 2.5e-116 422.9 373 58.7
Sc06g0008140 Simmondsia chinensis HOM05D004534 ORTHO05D005413 2.5e-116 422.9 365 58.4
Nitab4.5_0000561g0030 Nicotiana tabacum HOM05D004534 ORTHO05D005413 1.4e-114 417.2 356 59.6
Duzib106G1068 Durio zibethinus HOM05D004534 ORTHO05D005413 3.1e-114 416.0 379 56.7
Manes.10G040600 Manihot esculenta HOM05D004534 ORTHO05D005413 4.0e-114 415.6 376 56.6
FAN06G3998 Fragaria x ananassa HOM05D004534 ORTHO05D005413 2.0e-113 413.3 525 45.3
Ah.10g033090 Amaranthus hybridus HOM05D004534 ORTHO05D005413 1.1e-111 407.5 362 56.4
Lj1A926G31 Lonicera japonica HOM05D004534 ORTHO05D005413 2.4e-111 406.4 358 59.2
QL08p057247 Quercus lobata HOM05D004534 ORTHO05D005413 5.5e-111 405.2 544 42.6
FAN16G0790 Fragaria x ananassa HOM05D004534 ORTHO05D005413 7.9e-110 401.4 390 56.2
Oeu055059.2 Olea europaea HOM05D004534 ORTHO05D005413 7.4e-108 394.8 315 59.7
Oeu051854.2 Olea europaea HOM05D004534 ORTHO05D005413 4.9e-104 382.1 402 52.5
CiPaw.13G104100 Carya illinoinensis HOM05D004534 ORTHO05D005413 2.7e-102 376.3 258 70.9
Gohir.A05G298800 Gossypium hirsutum HOM05D004534 ORTHO05D005413 1.3e-101 374.0 273 64.5
Prupe.6G090300 Prunus persica HOM05D004534 ORTHO05D005413 7.4e-100 368.2 269 67.7
Nitab4.5_0000830g0040 Nicotiana tabacum HOM05D004534 ORTHO05D005413 1.3e-99 367.5 344 55.2
TAR633G1279 Trochodendron aralioides HOM05D004534 ORTHO05D005413 1.3e-99 367.5 244 71.3
FvH4_7g20500 Fragaria vesca HOM05D004534 ORTHO05D005413 1.6e-94 350.5 248 66.9
COL.COLO4_18394 Corchorus olitorius HOM05D004534 ORTHO05D005413 4.6e-94 349.0 306 57.8
Mapoly0029s0123 Marchantia polymorpha HOM05D004534 ORTHO05D005413 6.3e-91 338.6 355 49.9
Pp3c16_8740 Physcomitrium patens HOM05D004534 ORTHO05D005413 6.3e-91 338.6 367 48.2
AUR62036013 Chenopodium quinoa HOM05D004534 ORTHO05D005413 1.4e-90 337.4 381 47.0
Carub.0005s1159 Capsella rubella HOM05D004534 ORTHO05D005413 1.2e-89 334.3 239 68.2
Sed0004393 Sechium edule HOM05D004534 ORTHO05D005413 6.5e-88 328.6 357 51.0
SGA_v2.0_scaffold61G21215 Striga asiatica HOM05D004534 ORTHO05D005413 3.0e-85 319.7 241 63.5
SMO118G0317 Selaginella moellendorffii HOM05D004534 ORTHO05D005413 6.5e-80 302.0 352 47.2
Sopen06g031920 Solanum pennellii HOM05D004534 ORTHO05D005413 1.8e-77 293.9 208 68.8
Ciclev10032311m.g Citrus clementina HOM05D004534 ORTHO05D005413 1.1e-71 274.6 289 53.6
ClCG09G020370 Citrullus lanatus HOM05D004534 ORTHO05D005413 1.5e-71 274.2 381 42.8
MBI18_g24932_MAGBIO Magnolia biondii HOM05D004534 ORTHO05D005413 3.6e-70 269.6 530 34.7
FAN10G0821 Fragaria x ananassa HOM05D004534 ORTHO05D005413 4.4e-68 262.7 351 44.4
Cc09_g02390 Coffea canephora HOM05D004534 ORTHO05D005413 3.5e-65 253.1 197 65.0
CBR_g24062 Chara braunii HOM05D004534 ORTHO05D005413 1.3e-56 224.6 299 40.8
Cpa.g.sc1.278 Carica papaya HOM05D004534 ORTHO05D005413 2.5e-55 220.3 266 47.4
AagrBONN_evm.TU.Sc2ySwM_228.5090 Anthoceros agrestis HOM05D004534 ORTHO05D005413 1.3e-51 208.0 195 51.8
VMungo0464G2039 Vigna mungo HOM05D004534 ORTHO05D005413 2.3e-40 170.6 94 86.2
Cfa024137 Carpinus fangiana HOM05D004534 ORTHO05D005413 1.5e-39 167.9 366 32.8
PRCOL_00005152 Prasinoderma coloniale HOM05D004534 ORTHO05D005413 4.3e-39 166.4 320 33.1
Cre01.g013250 Chlamydomonas reinhardtii HOM05D004534 ORTHO05D005413 3.6e-38 163.3 332 31.6
Cc09_g02400 Coffea canephora HOM05D004534 ORTHO05D005413 6.8e-37 159.1 129 61.2
Nitab4.5_0000830g0060 Nicotiana tabacum HOM05D004534 ORTHO05D005413 1.5e-36 157.9 172 49.4
Glyma.15G044000 Glycine max HOM05D004534 ORTHO05D005413 4.4e-36 156.4 81 90.1
AUR62035991 Chenopodium quinoa HOM05D004534 ORTHO05D005413 6.4e-27 125.9 118 52.5
CAN.G829.5 Capsicum annuum HOM05D004534 ORTHO05D005706 5.4e-18 96.3 63 68.3
RcHm_v2.0_Chr1g0364361 Rosa chinensis HOM05D003391 ORTHO05D005413 2.3e-16 90.9 56 69.6
RcHm_v2.0_Chr5g0046071 Rosa chinensis HOM05D004534 ORTHO05D005413 2.5e-15 87.4 47 85.1
Nitab4.5_0000830g0070 Nicotiana tabacum HOM05D004534 ORTHO05D005413 4.9e-11 73.2 43 76.7
Actinidia38238 Actinidia chinensis HOM05D004534 ORTHO05D005413 1.6e-09 68.2 135 34.1
AagrBONN_evm.TU.Sc2ySwM_117.2640 Anthoceros agrestis HOM05D012537 ORTHO05D009535 3.3e-07 60.5 35 62.9


User provided reference genes

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