Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.L000400 Phaseolus vulgaris HOM05D004639 ORTHO05D005201 0.0e+00 3224.5 1792 100.0
Glyma.13G009500 Glycine max HOM05D004639 ORTHO05D005201 0.0e+00 1421.4 1485 56.6
Phvul.L000201 Phaseolus vulgaris HOM05D004639 ORTHO05D005201 3.1e-132 478.0 294 100.0
VMungo0540G1855 Vigna mungo HOM05D004639 ORTHO05D005201 2.6e-126 458.4 465 60.6
arahy.Tifrunner.gnm1.ann1.GWL1KB Arachis hypogaea HOM05D004639 ORTHO05D005201 2.7e-107 395.2 1051 32.5
arahy.Tifrunner.gnm1.ann1.CP937L Arachis hypogaea HOM05D004639 ORTHO05D005201 3.6e-104 384.8 1133 31.1
VMungo0540G1024 Vigna mungo HOM05D004639 ORTHO05D005201 2.2e-69 269.2 404 45.3
MD00G1164900 Malus domestica HOM05D004639 ORTHO05D005201 2.1e-64 252.7 162 72.8
Ciclev10028470m.g Citrus clementina HOM05D004639 ORTHO05D005201 1.4e-63 250.0 152 74.3
Carub.0003s0750 Capsella rubella HOM05D004639 ORTHO05D005201 1.8e-63 249.6 174 67.2
Cpa.g.sc15.68 Carica papaya HOM05D004639 ORTHO05D005201 1.8e-63 249.6 181 65.2
Lj2g0020909 Lotus japonicus HOM05D004639 ORTHO05D005201 4.0e-63 248.4 167 70.1
THA.LOC104805811 Tarenaya hassleriana HOM05D004639 ORTHO05D005201 2.0e-62 246.1 173 66.5
Thhalv10020704m.g Eutrema salsugineum HOM05D004639 ORTHO05D005201 2.6e-62 245.7 177 66.1
Prupe.4G286600 Prunus persica HOM05D004639 ORTHO05D005201 2.6e-62 245.7 289 47.1
AL3G19300 Arabidopsis lyrata HOM05D004639 ORTHO05D005201 5.8e-62 244.6 177 64.4
Actinidia23035 Actinidia chinensis HOM05D004639 ORTHO05D005201 7.6e-62 244.2 168 66.7
A07p00740 Brassica napus HOM05D004639 ORTHO05D005201 1.0e-61 243.8 246 55.7
Aqoxy4G01839 Aquilegia oxysepala HOM05D004639 ORTHO05D005201 1.3e-61 243.4 152 72.4
Gohir.A09G007300 Gossypium hirsutum HOM05D004639 ORTHO05D005201 1.7e-61 243.0 152 73.0
Gorai.006G008100 Gossypium raimondii HOM05D004639 ORTHO05D005201 1.7e-61 243.0 152 73.0
C07p01740 Brassica napus HOM05D004639 ORTHO05D005201 2.9e-61 242.3 157 71.3
BolC7t40577H Brassica oleracea HOM05D004639 ORTHO05D005201 2.9e-61 242.3 157 71.3
Oeu061992.1 Olea europaea HOM05D004639 ORTHO05D005201 6.5e-61 241.1 349 41.3
Gohir.D09G006600 Gossypium hirsutum HOM05D004639 ORTHO05D005201 8.4e-61 240.7 152 72.4
QL01p053168 Quercus lobata HOM05D004639 ORTHO05D005201 8.4e-61 240.7 695 31.9
BraA07t27872Z Brassica rapa HOM05D004639 ORTHO05D005201 1.1e-60 240.4 246 60.2
Sp3g06840 Schrenkiella parvula HOM05D004639 ORTHO05D005201 1.4e-60 240.0 177 65.5
FvH4_1g27870 Fragaria vesca HOM05D004639 ORTHO05D005201 2.5e-60 239.2 204 57.8
FAN26G1776 Fragaria x ananassa HOM05D004639 ORTHO05D005201 2.5e-60 239.2 204 57.8
Thecc.04G056700 Theobroma cacao HOM05D004639 ORTHO05D005201 2.5e-60 239.2 357 41.2
TAR376G0371 Trochodendron aralioides HOM05D004639 ORTHO05D005201 2.5e-60 239.2 166 66.9
Manes.18G143900 Manihot esculenta HOM05D004639 ORTHO05D005201 4.2e-60 238.4 158 67.7
FAN19G3130 Fragaria x ananassa HOM05D004639 ORTHO05D005201 7.1e-60 237.7 204 57.4
BcaB04g16901 Brassica carinata HOM05D004639 ORTHO05D005201 9.3e-60 237.3 161 68.9
QL01p053770 Quercus lobata HOM05D004639 ORTHO05D005201 3.5e-59 235.3 705 31.8
Aa31LG5G18470 Aethionema arabicum HOM05D004639 ORTHO05D005201 1.3e-58 233.4 183 61.7
RcHm_v2.0_Chr3g0497491 Rosa chinensis HOM05D004639 ORTHO05D005201 3.0e-58 232.3 205 57.1
Lj2g0022882 Lotus japonicus HOM05D004639 ORTHO05D005201 1.9e-57 229.6 176 65.3
vmacro04281 Vaccinium macrocarpon HOM05D004639 ORTHO05D005201 2.5e-57 229.2 156 67.9
CANSAT64G1383 Cannabis sativa HOM05D004639 ORTHO05D005201 4.3e-57 228.4 154 69.5
CANSAT64G2443 Cannabis sativa HOM05D004639 ORTHO05D005201 4.3e-57 228.4 154 69.5
Hma1.2p1_1077F.1_g254710 Hydrangea macrophylla HOM05D004639 ORTHO05D005201 4.3e-57 228.4 207 57.0
vmacro22429 Vaccinium macrocarpon HOM05D004639 ORTHO05D005201 4.3e-57 228.4 158 67.1
CANSAT64G2852 Cannabis sativa HOM05D004639 ORTHO05D005201 5.7e-57 228.0 152 69.7
TWI15G1026 Tripterygium wilfordii HOM05D004639 ORTHO05D005201 5.7e-57 228.0 162 64.2
MBI03_g13041_MAGBIO Magnolia biondii HOM05D004639 ORTHO05D005201 2.1e-56 226.1 153 67.3
Rhsim11G0007200 Rhododendron simsii HOM05D004639 ORTHO05D005201 2.8e-56 225.7 172 62.2
TWI31G0951 Tripterygium wilfordii HOM05D004639 ORTHO05D005201 2.8e-56 225.7 159 66.0
ECA234G0087 Erigeron canadensis HOM05D004639 ORTHO05D005201 6.3e-56 224.6 167 62.3
Nitab4.5_0010824g0010 Nicotiana tabacum HOM05D004639 ORTHO05D005201 1.8e-55 223.0 327 42.5
Dinv01634 Davidia involucrata HOM05D004639 ORTHO05D005201 4.1e-55 221.9 495 34.3
Sabra12G0026100 Salix brachista HOM05D004639 ORTHO05D005201 5.3e-55 221.5 147 68.0
MELO3C022885.2 Cucumis melo HOM05D004639 ORTHO05D005201 6.9e-55 221.1 177 59.3
DCAR_016067 Daucus carota HOM05D004639 ORTHO05D005201 1.5e-54 219.9 173 61.8
Potri.012G037700 Populus trichocarpa HOM05D004639 ORTHO05D005201 1.5e-54 219.9 147 68.0
Cc00_g06760 Coffea canephora HOM05D004639 ORTHO05D005201 2.6e-54 219.2 156 63.5
Lsat_1_v5_gn_3_140620 Lactuca sativa HOM05D004639 ORTHO05D005201 4.5e-54 218.4 158 62.7
CsaV3_5G037160 Cucumis sativus L. HOM05D004639 ORTHO05D005201 5.9e-54 218.0 177 58.8
Nn5g27169 Nelumbo nucifera HOM05D004639 ORTHO05D005201 1.0e-53 217.2 177 62.1
Nitab4.5_0001799g0030 Nicotiana tabacum HOM05D004639 ORTHO05D005201 1.7e-53 216.5 326 40.2
CAN.G989.2 Capsicum annuum HOM05D004639 ORTHO05D005201 2.2e-53 216.1 166 60.8
ECA234G3785 Erigeron canadensis HOM05D004639 ORTHO05D005201 2.9e-53 215.7 200 52.0
Peaxi162Scf00331g00311 Petunia axillaris HOM05D004639 ORTHO05D005201 3.8e-53 215.3 158 61.4
MSTRG.8994 Avicennia marina HOM05D004639 ORTHO05D005201 8.5e-53 214.2 153 65.4
ClCG08G005050 Citrullus lanatus HOM05D004639 ORTHO05D005201 1.1e-52 213.8 171 58.5
PGR031G3121 Punica granatum HOM05D004639 ORTHO05D005201 1.4e-52 213.4 152 64.5
Atru.chr9.65 Acer truncatum HOM05D004639 ORTHO05D005201 1.9e-52 213.0 155 61.9
Medtr0037s0250 Medicago truncatula HOM05D004639 ORTHO05D005201 3.2e-52 212.2 175 59.4
PSO384G4518 Papaver somniferum HOM05D004639 ORTHO05D005201 4.2e-52 211.8 179 60.3
PSO493G0020 Papaver somniferum HOM05D004639 ORTHO05D005201 4.2e-52 211.8 179 60.3
GSVIVG01003641001 Vitis vinifera HOM05D004639 ORTHO05D005201 1.2e-51 210.3 150 63.3
Migut.A01100 Erythranthe guttata HOM05D004639 ORTHO05D005201 1.6e-51 209.9 152 63.2
Solyc02g021100.3 Solanum lycopersicum HOM05D004639 ORTHO05D005201 2.1e-51 209.5 169 59.8
Ah.05g167280 Amaranthus hybridus HOM05D001485 ORTHO05D001407 2.7e-51 209.1 155 61.3
SalBow6G0181 Salvia bowleyana HOM05D004639 ORTHO05D005201 3.6e-51 208.8 174 57.5
SalBow6G5700 Salvia bowleyana HOM05D004639 ORTHO05D005201 3.6e-51 208.8 174 57.5
Sopen02g005400 Solanum pennellii HOM05D004639 ORTHO05D005201 3.6e-51 208.8 169 59.8
SGA_v2.0_scaffold291G47333 Striga asiatica HOM05D004639 ORTHO05D005201 4.6e-51 208.4 167 58.1
HanXRQChr12g0386021 Helianthus annuus HOM05D004639 ORTHO05D005201 6.1e-51 208.0 143 65.0
Medtr0037s0060 Medicago truncatula HOM05D004639 ORTHO05D005201 3.0e-50 205.7 181 55.8
Potri.014G187300 Populus trichocarpa HOM05D004639 ORTHO05D005201 3.0e-50 205.7 154 62.3
Potri.014G189400 Populus trichocarpa HOM05D004639 ORTHO05D005201 3.0e-50 205.7 173 57.2
ATR0068G005 Amborella trichopoda HOM05D004639 ORTHO05D005201 5.1e-50 204.9 179 55.3
Potri.014G187000 Populus trichocarpa HOM05D004639 ORTHO05D005201 5.1e-50 204.9 154 62.3
Sabra19G0060900 Salix brachista HOM05D004639 ORTHO05D005201 5.1e-50 204.9 182 54.9
Sabra19G0061000 Salix brachista HOM05D004639 ORTHO05D005201 5.1e-50 204.9 182 54.9
SabraUnG0000100 Salix brachista HOM05D004639 ORTHO05D005201 5.1e-50 204.9 182 54.9
SabraUnG0000200 Salix brachista HOM05D004639 ORTHO05D005201 5.1e-50 204.9 182 54.9
AUR62017756 Chenopodium quinoa HOM05D004639 ORTHO05D005201 8.7e-50 204.1 156 57.7
HanXRQChr16g0532761 Helianthus annuus HOM05D004639 ORTHO05D005201 1.5e-49 203.4 143 63.6
Eucgr.B01580 Eucalyptus grandis HOM05D004639 ORTHO05D005201 4.3e-49 201.8 160 59.4
Glyma.13G009700 Glycine max HOM05D004639 ORTHO05D005201 2.2e-48 199.5 515 34.2
Sabra19G0060700 Salix brachista HOM05D004639 ORTHO05D005201 4.8e-48 198.4 147 62.6
CiPaw.15G093500 Carya illinoinensis HOM05D004639 ORTHO05D005201 6.9e-47 194.5 526 30.6
EL10As7g23724 Beta vulgaris HOM05D004639 ORTHO05D005201 2.0e-46 193.0 286 39.5
SEGI_27362 Sequoiadendron giganteum HOM05D004639 ORTHO05D005201 2.2e-45 189.5 144 59.7
BcaC08g44553 Brassica carinata HOM05D004639 ORTHO05D005201 2.9e-45 189.1 254 50.4
Lj2g0018447 Lotus japonicus HOM05D004639 ORTHO05D005201 1.9e-44 186.4 179 50.8
Lalb_Chr00c23g0406301 Lupinus albus HOM05D004639 ORTHO05D005201 3.2e-44 185.7 186 52.7
Hund25534 Selenicereus undatus HOM05D004639 ORTHO05D005201 9.4e-44 184.1 135 60.7
Duzib235G0802 Durio zibethinus HOM05D004639 ORTHO05D005201 2.1e-43 183.0 129 65.1
HPP92_007024 Vanilla planifolia HOM05D004639 ORTHO05D005201 1.4e-42 180.3 152 53.9
SHI25031 Sapria himalayana HOM05D004639 ORTHO05D005201 5.1e-42 178.3 145 55.9
BcaC06g36658 Brassica carinata HOM05D004639 ORTHO05D005201 8.8e-42 177.6 124 66.9
CDE02G2478 Ceratophyllum demersum HOM05D004639 ORTHO05D005201 5.7e-41 174.9 177 49.7
Potri.014G187766 Populus trichocarpa HOM05D004639 ORTHO05D005201 1.7e-40 173.3 154 55.2
HPP92_007076 Vanilla planifolia HOM05D004639 ORTHO05D005201 6.3e-40 171.4 145 54.5
AUR62032895 Chenopodium quinoa HOM05D004639 ORTHO05D005201 1.5e-38 166.8 156 51.9
Sabra19G0060200 Salix brachista HOM05D004639 ORTHO05D005201 1.5e-38 166.8 185 47.0
unitig_22.g6364 Utricularia gibba HOM05D004639 ORTHO05D005201 5.9e-38 164.9 126 62.7
Mapoly0049s0024 Marchantia polymorpha HOM05D004639 ORTHO05D005201 2.2e-37 162.9 133 55.6
Pp3c15_4380 Physcomitrium patens HOM05D004639 ORTHO05D005201 2.2e-37 162.9 140 52.9
Nitab4.5_0000843g0080 Nicotiana tabacum HOM05D004639 ORTHO05D005201 5.0e-37 161.8 293 38.6
QL01p052883 Quercus lobata HOM05D011240 ORTHO05D005201 5.0e-37 161.8 99 70.7
Sc22g0004560 Simmondsia chinensis HOM05D004639 ORTHO05D005201 6.5e-37 161.4 148 54.7
CARHR082670 Cardamine hirsuta HOM05D004639 ORTHO05D005201 8.5e-37 161.0 103 70.9
CBR_g51322 Chara braunii HOM05D004639 ORTHO05D005201 1.6e-35 156.8 133 52.6
TPR.G9531 Trifolium pratense HOM05D004639 ORTHO05D005201 1.8e-34 153.3 101 67.3
Zm00001eb264110 Zea mays HOM05D004639 ORTHO05D005201 1.1e-33 150.6 171 44.4
Sed0017627 Sechium edule HOM05D004639 ORTHO05D005201 2.6e-33 149.4 123 56.1
C06p20180 Brassica napus HOM05D004639 ORTHO05D005201 4.4e-33 148.7 181 48.1
BolC6t37199H Brassica oleracea HOM05D004639 ORTHO05D005201 4.4e-33 148.7 181 48.1
SMO334G0025 Selaginella moellendorffii HOM05D004639 ORTHO05D005201 4.4e-33 148.7 133 51.1
Dinv08242 Davidia involucrata HOM05D004639 ORTHO05D005201 2.8e-32 146.0 94 68.1
Os09g0101100 Oryza sativa ssp. japonica HOM05D004639 ORTHO05D005201 2.8e-32 146.0 152 45.4
Lalb_Chr18g0049251 Lupinus albus HOM05D004639 ORTHO05D005201 1.7e-29 136.7 98 64.3
Lalb_Chr00c55g0413711 Lupinus albus HOM05D004639 ORTHO05D005201 6.5e-29 134.8 96 64.6
PRCOL_00006916 Prasinoderma coloniale HOM05D004639 ORTHO05D005201 1.4e-26 127.1 134 44.0
COL.COLO4_05916 Corchorus olitorius HOM05D004639 ORTHO05D005201 5.2e-26 125.2 130 50.8
CBR_g37349 Chara braunii HOM05D000004 ORTHO05D000002 1.4e-23 117.1 105 50.5
Cre05.g234250 Chlamydomonas reinhardtii HOM05D004639 ORTHO05D005201 1.6e-22 113.6 135 37.0
Gohir.D02G140450 Gossypium hirsutum HOM05D004639 ORTHO05D005201 2.0e-22 113.2 101 54.5
Sabra19G0060300 Salix brachista HOM05D004639 ORTHO05D005201 4.5e-22 112.1 81 63.0
Gorai.005G156200 Gossypium raimondii HOM05D004639 ORTHO05D005201 1.3e-21 110.5 105 52.4
HPP92_015991 Vanilla planifolia HOM05D004639 ORTHO05D005201 1.7e-21 110.2 98 51.0
QL93p0107_0438 Quercus lobata HOM05D004639 ORTHO05D005201 9.4e-20 104.4 57 75.4
Sabra19G0060600 Salix brachista HOM05D004639 ORTHO05D005201 2.7e-19 102.8 116 46.6
QL02p058806 Quercus lobata HOM05D004639 ORTHO05D005201 5.2e-18 98.6 480 25.2
Haze_08020 Corylus avellana HOM05D004639 ORTHO05D005201 1.3e-16 94.0 71 64.8
CARHR082660 Cardamine hirsuta HOM05D004639 ORTHO05D005201 2.2e-16 93.2 78 60.3
QL01p054228 Quercus lobata HOM05D004639 ORTHO05D005201 4.8e-16 92.0 81 59.3
CSS0047186 Camellia sinensis var. sinensis HOM05D004639 ORTHO05D005201 9.1e-15 87.8 70 58.6
Medtr6g034730 Medicago truncatula HOM05D004639 ORTHO05D005201 9.1e-15 87.8 64 59.4
FAN23G0569 Fragaria x ananassa HOM05D004639 ORTHO05D005201 1.2e-14 87.4 77 53.2
CSS0021628 Camellia sinensis var. sinensis HOM05D004639 ORTHO05D005201 1.6e-14 87.0 84 53.6
TPR.G22982 Trifolium pratense HOM05D004639 ORTHO05D005201 3.5e-14 85.9 95 49.5
Psat1g014800 Pisum sativum HOM05D004639 ORTHO05D005201 2.9e-13 82.8 96 49.0
AT3G07930 Arabidopsis thaliana HOM05D004639 ORTHO05D005201 3.8e-13 82.4 72 56.9
Medtr6g033105 Medicago truncatula HOM05D004639 ORTHO05D005201 2.0e-09 70.1 78 48.7
unitig_22.g6365 Utricularia gibba HOM05D004639 ORTHO05D005201 3.5e-06 59.3 32 78.1


User provided reference genes

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