Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.011G213100 Phaseolus vulgaris HOM05D007573 ORTHO05D009938 1.5e-26 122.1 61 100.0
VMungo1383G0060 Vigna mungo HOM05D007573 ORTHO05D009938 1.3e-22 109.0 61 86.9
Hma1.2p1_0540F.1_g174720 Hydrangea macrophylla HOM05D007573 ORTHO05D009938 3.0e-19 97.8 59 78.0
Hma1.2p1_0540F.1_g174725 Hydrangea macrophylla HOM05D007573 ORTHO05D009938 3.0e-19 97.8 59 78.0
Glyma.06G246700 Glycine max HOM05D007573 ORTHO05D009938 5.1e-19 97.1 61 77.0
Glyma.12G150700 Glycine max HOM05D007573 ORTHO05D009938 5.1e-19 97.1 61 78.7
TAR626G0043 Trochodendron aralioides HOM05D007573 ORTHO05D009938 4.3e-18 94.0 59 76.3
Haze_09458 Corylus avellana HOM05D007573 ORTHO05D009938 5.7e-18 93.6 55 81.8
Dinv08308 Davidia involucrata HOM05D007573 ORTHO05D009938 5.7e-18 93.6 52 86.5
Lalb_Chr03g0030571 Lupinus albus HOM05D007573 ORTHO05D009938 5.7e-18 93.6 61 75.4
Dinv04316 Davidia involucrata HOM05D007573 ORTHO05D009938 7.4e-18 93.2 59 74.6
Lalb_Chr19g0134301 Lupinus albus HOM05D007573 ORTHO05D009938 7.4e-18 93.2 59 78.0
Cpa.g.sc80.44 Carica papaya HOM05D007573 ORTHO05D009938 9.7e-18 92.8 56 76.8
AL3G27940 Arabidopsis lyrata HOM05D007573 ORTHO05D009938 1.6e-17 92.0 55 78.2
AT3G15395 Arabidopsis thaliana HOM05D007573 ORTHO05D009938 1.6e-17 92.0 55 78.2
Thhalv10021902m.g Eutrema salsugineum HOM05D007573 ORTHO05D009938 1.6e-17 92.0 55 80.0
CARHR090450 Cardamine hirsuta HOM05D007573 ORTHO05D009938 2.8e-17 91.3 55 76.4
AL230U10020 Arabidopsis lyrata HOM05D007573 ORTHO05D013670 3.7e-17 90.9 52 80.8
A03p39300 Brassica napus HOM05D007573 ORTHO05D009938 3.7e-17 90.9 54 79.6
C03p47670 Brassica napus HOM05D007573 ORTHO05D009938 3.7e-17 90.9 54 79.6
BraA03t13080Z Brassica rapa HOM05D003356 ORTHO05D004362 3.7e-17 90.9 54 79.6
CSS0004701 Camellia sinensis var. sinensis HOM05D007573 ORTHO05D009938 3.7e-17 90.9 59 74.6
C05p51770 Brassica napus HOM05D007573 ORTHO05D009938 4.8e-17 90.5 52 82.7
BolC5t33863H Brassica oleracea HOM05D007573 ORTHO05D009938 4.8e-17 90.5 52 82.7
Manes.03G112266 Manihot esculenta HOM05D007573 ORTHO05D009938 4.8e-17 90.5 58 75.9
Nn8g41073 Nelumbo nucifera HOM05D007573 ORTHO05D009938 6.3e-17 90.1 56 75.0
Aa31LG8G2630 Aethionema arabicum HOM05D007573 ORTHO05D009938 8.2e-17 89.7 57 75.4
Carub.0003s1512 Capsella rubella HOM05D007573 ORTHO05D009938 8.2e-17 89.7 55 78.2
Ciclev10010140m.g Citrus clementina HOM05D007573 ORTHO05D009938 8.2e-17 89.7 53 77.4
COL.COLO4_09423 Corchorus olitorius HOM05D007573 ORTHO05D009938 8.2e-17 89.7 55 78.2
Prupe.4G184300 Prunus persica HOM05D007573 ORTHO05D009938 8.2e-17 89.7 58 74.1
Thecc.07G080300 Theobroma cacao HOM05D007573 ORTHO05D009938 8.2e-17 89.7 55 76.4
CiPaw.12G120200 Carya illinoinensis HOM05D007573 ORTHO05D009938 1.4e-16 89.0 56 76.8
BcaB06g29571 Brassica carinata HOM05D007573 ORTHO05D009938 1.8e-16 88.6 51 82.4
Gorai.002G072400 Gossypium raimondii HOM05D007573 ORTHO05D009938 1.8e-16 88.6 58 75.9
Gohir.A01G065200 Gossypium hirsutum HOM05D007573 ORTHO05D009938 4.1e-16 87.4 55 76.4
RcHm_v2.0_Chr5g0034341 Rosa chinensis HOM05D007573 ORTHO05D009938 4.1e-16 87.4 61 68.9
Cc06_g21640 Coffea canephora HOM05D007573 ORTHO05D009938 6.9e-16 86.7 58 67.2
Medtr8g043400 Medicago truncatula HOM05D007573 ORTHO05D009938 6.9e-16 86.7 59 72.9
ClCG10G006860 Citrullus lanatus HOM05D007573 ORTHO05D009938 9.0e-16 86.3 59 71.2
FAN04G1519 Fragaria x ananassa HOM05D007573 ORTHO05D009938 9.0e-16 86.3 61 67.2
FAN18G1355 Fragaria x ananassa HOM05D007573 ORTHO05D009938 9.0e-16 86.3 61 67.2
FAN18G3111 Fragaria x ananassa HOM05D007573 ORTHO05D009938 9.0e-16 86.3 61 67.2
MSTRG.15220 Avicennia marina HOM05D007573 ORTHO05D009938 1.2e-15 85.9 57 70.2
Lj3g0024326 Lotus japonicus HOM05D007573 ORTHO05D009938 1.2e-15 85.9 60 73.3
THA.LOC104810481 Tarenaya hassleriana HOM05D007573 ORTHO05D009938 2.0e-15 85.1 57 70.2
CiPaw.08G146300 Carya illinoinensis HOM05D007573 ORTHO05D009938 2.6e-15 84.7 56 75.0
MD00G1089500 Malus domestica HOM05D007573 ORTHO05D009938 2.6e-15 84.7 58 70.7
TWI77G0001 Tripterygium wilfordii HOM05D007573 ORTHO05D009938 2.6e-15 84.7 56 71.4
Duzib213G0732 Durio zibethinus HOM05D007573 ORTHO05D009938 3.4e-15 84.3 56 71.4
TWI39G0607 Tripterygium wilfordii HOM05D007573 ORTHO05D009938 4.5e-15 84.0 59 69.5
Atru.chr2.2713 Acer truncatum HOM05D007573 ORTHO05D009938 5.9e-15 83.6 59 72.9
BcaC01g03875 Brassica carinata HOM05D007573 ORTHO05D009938 5.9e-15 83.6 62 69.4
CANSAT54G1030 Cannabis sativa HOM05D007573 ORTHO05D009938 1.0e-14 82.8 59 67.8
CsaV3_3G006210 Cucumis sativus L. HOM05D007573 ORTHO05D009938 1.0e-14 82.8 55 67.3
Sed0027924 Sechium edule HOM05D007573 ORTHO05D009938 1.0e-14 82.8 58 70.7
MELO3C016521.2 Cucumis melo HOM05D007573 ORTHO05D009938 1.3e-14 82.4 55 67.3
Psat4g143240 Pisum sativum HOM05D007573 ORTHO05D009938 1.3e-14 82.4 61 70.5
CDE03G0215 Ceratophyllum demersum HOM05D001610 ORTHO05D001585 2.9e-14 81.3 58 63.8
Os02g0197400 Oryza sativa ssp. japonica HOM05D007573 ORTHO05D009938 1.1e-13 79.3 59 64.4
ATR0751G258 Amborella trichopoda HOM05D007573 ORTHO05D009938 1.4e-13 79.0 62 61.3
Potri.001G402000 Populus trichocarpa HOM05D007573 ORTHO05D009938 1.4e-13 79.0 59 67.8
Solyc07g063250.3 Solanum lycopersicum HOM05D007573 ORTHO05D009938 1.4e-13 79.0 60 63.3
C07p18110 Brassica napus HOM05D003404 ORTHO05D009938 2.5e-13 78.2 43 83.7
Nitab4.5_0003688g0030 Nicotiana tabacum HOM05D007573 ORTHO05D009938 5.5e-13 77.0 51 66.7
Nitab4.5_0003769g0010 Nicotiana tabacum HOM05D007573 ORTHO05D009938 5.5e-13 77.0 51 66.7
PSO017G6785 Papaver somniferum HOM05D007573 ORTHO05D009938 9.4e-13 76.3 59 64.4
HPP92_024073 Vanilla planifolia HOM05D007573 ORTHO05D009938 9.4e-13 76.3 61 62.3
Lsat_1_v5_gn_7_105220 Lactuca sativa HOM05D007573 ORTHO05D009938 2.7e-12 74.7 42 83.3
EL10Ac3g05359 Beta vulgaris HOM05D007573 ORTHO05D009938 4.6e-12 73.9 51 68.6
Peaxi162Scf00069g01326 Petunia axillaris HOM05D007573 ORTHO05D009938 7.9e-12 73.2 51 66.7
PGR031G1039 Punica granatum HOM05D007573 ORTHO05D009938 7.9e-12 73.2 58 62.1
Hund27723 Selenicereus undatus HOM05D007573 ORTHO05D009938 1.0e-11 72.8 56 62.5
Hund27736 Selenicereus undatus HOM05D007573 ORTHO05D009938 1.0e-11 72.8 56 62.5
Aqoxy7G03752 Aquilegia oxysepala HOM05D007573 ORTHO05D009938 3.0e-11 71.2 57 64.9
MBI15_g18737_MAGBIO Magnolia biondii HOM05D007573 ORTHO05D009938 2.0e-10 68.6 54 64.8
Migut.M00851 Erythranthe guttata HOM05D007573 ORTHO05D009938 9.7e-10 66.2 51 60.8
Actinidia09676 Actinidia chinensis HOM05D007573 ORTHO05D009938 3.7e-09 64.3 48 68.8
MD03G1224700 Malus domestica HOM05D007573 ORTHO05D009938 1.4e-08 62.4 46 67.4
Potri.006G225232 Populus trichocarpa HOM05D007573 ORTHO05D009938 1.2e-07 59.3 62 56.5
SHI14860 Sapria himalayana HOM05D007573 ORTHO05D009938 2.0e-07 58.5 43 58.1
SalBow7G4816 Salvia bowleyana HOM05D007573 ORTHO05D009938 1.7e-06 55.5 96 39.6


User provided reference genes

Program Settings