Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.011G212500 Phaseolus vulgaris HOM05D007026 ORTHO05D008493 2.4e-117 425.6 229 100.0
VMungo1127G0427 Vigna mungo HOM05D007026 ORTHO05D008493 3.4e-92 342.0 242 81.4
Glyma.13G204000 Glycine max HOM05D007026 ORTHO05D008493 1.2e-65 253.8 236 65.7
Medtr8g036520 Medicago truncatula HOM05D007026 ORTHO05D008493 1.5e-58 230.3 264 54.5
arahy.Tifrunner.gnm1.ann1.VL74DI Arachis hypogaea HOM05D007026 ORTHO05D008493 1.4e-56 223.8 233 56.7
Lalb_Chr03g0033971 Lupinus albus HOM05D007026 ORTHO05D008493 2.0e-55 219.9 236 58.5
Psat4g148320 Pisum sativum HOM05D007026 ORTHO05D008493 1.8e-53 213.4 270 51.1
Cc02_g27730 Coffea canephora HOM05D007026 ORTHO05D008493 7.7e-52 208.0 174 64.4
Hma1.2p1_0293F.1_g116330 Hydrangea macrophylla HOM05D007026 ORTHO05D008493 4.2e-50 202.2 187 60.4
THA.LOC104826673 Tarenaya hassleriana HOM05D007026 ORTHO05D008493 4.2e-50 202.2 200 56.0
Thecc.01G412700 Theobroma cacao HOM05D007026 ORTHO05D008493 4.2e-50 202.2 199 57.8
Lj3g0000564 Lotus japonicus HOM05D007026 ORTHO05D008493 2.1e-49 199.9 275 51.3
RcHm_v2.0_Chr1g0315651 Rosa chinensis HOM05D007026 ORTHO05D008493 2.1e-49 199.9 179 62.0
FAN03G2284 Fragaria x ananassa HOM05D007026 ORTHO05D008493 2.8e-49 199.5 204 58.8
PGSC0003DMG400024551 Solanum tuberosum HOM05D007026 ORTHO05D008493 4.7e-49 198.7 208 54.3
Sopen03g034460 Solanum pennellii HOM05D007026 ORTHO05D008493 8.0e-49 198.0 162 63.6
FAN06G1399 Fragaria x ananassa HOM05D007026 ORTHO05D008493 1.4e-48 197.2 204 57.8
Prupe.2G010600 Prunus persica HOM05D007026 ORTHO05D008493 1.4e-48 197.2 209 57.4
FAN10G3680 Fragaria x ananassa HOM05D007026 ORTHO05D008493 2.3e-48 196.4 207 57.5
MD07G1007900 Malus domestica HOM05D007026 ORTHO05D008493 2.3e-48 196.4 198 58.6
CANSAT80G1756 Cannabis sativa HOM05D007026 ORTHO05D008493 4.0e-48 195.7 203 54.7
Cfa010744 Carpinus fangiana HOM05D007026 ORTHO05D008493 5.2e-48 195.3 194 57.7
Actinidia21558 Actinidia chinensis HOM05D007026 ORTHO05D008493 2.6e-47 193.0 183 59.6
Duzib268G1513 Durio zibethinus HOM05D007026 ORTHO05D008493 2.6e-47 193.0 194 57.7
Manes.10G145400 Manihot esculenta HOM05D007026 ORTHO05D008493 2.6e-47 193.0 176 60.2
CSS0028033 Camellia sinensis var. sinensis HOM05D007026 ORTHO05D008493 3.4e-47 192.6 216 53.7
Sabra09G0047000 Salix brachista HOM05D007026 ORTHO05D008493 3.4e-47 192.6 185 60.5
Solyc03g115460.3 Solanum lycopersicum HOM05D007026 ORTHO05D008493 3.4e-47 192.6 229 50.2
Rhsim01G0130400 Rhododendron simsii HOM05D007026 ORTHO05D008493 4.4e-47 192.2 207 53.6
Peaxi162Scf00428g00077 Petunia axillaris HOM05D007026 ORTHO05D008493 5.7e-47 191.8 208 55.3
Nn2g15423 Nelumbo nucifera HOM05D007026 ORTHO05D008493 7.5e-47 191.4 189 58.7
Ciclev10032288m.g Citrus clementina HOM05D007026 ORTHO05D008493 1.7e-46 190.3 174 59.8
ClCG09G004280 Citrullus lanatus HOM05D007026 ORTHO05D008493 2.2e-46 189.9 193 54.9
TWI09G0295 Tripterygium wilfordii HOM05D007026 ORTHO05D008493 2.2e-46 189.9 170 59.4
CsaV3_7G031200 Cucumis sativus L. HOM05D007026 ORTHO05D008493 1.1e-45 187.6 193 53.9
Potri.009G063700 Populus trichocarpa HOM05D007026 ORTHO05D008493 1.1e-45 187.6 206 56.3
Haze_03229 Corylus avellana HOM05D007026 ORTHO05D008493 1.4e-45 187.2 185 58.9
QL04p005492 Quercus lobata HOM05D007026 ORTHO05D008493 2.4e-45 186.4 208 53.8
MELO3C023538.2 Cucumis melo HOM05D007026 ORTHO05D008493 3.2e-45 186.0 192 54.2
Potri.001G269000 Populus trichocarpa HOM05D007026 ORTHO05D008493 3.2e-45 186.0 167 62.9
MSTRG.28077 Avicennia marina HOM05D007026 ORTHO05D008493 5.4e-45 185.3 207 53.6
Nitab4.5_0002881g0080 Nicotiana tabacum HOM05D007026 ORTHO05D008493 5.4e-45 185.3 208 52.4
PGR044G0728 Punica granatum HOM05D007026 ORTHO05D008493 7.0e-45 184.9 204 53.9
vmacro21182 Vaccinium macrocarpon HOM05D007026 ORTHO05D008493 1.6e-44 183.7 211 52.1
SGA_v2.0_scaffold4G02258 Striga asiatica HOM05D007026 ORTHO05D008493 4.5e-44 182.2 219 50.7
TAR623G0027 Trochodendron aralioides HOM05D007026 ORTHO05D008493 4.5e-44 182.2 186 57.5
TAR623G1735 Trochodendron aralioides HOM05D007026 ORTHO05D008493 5.9e-44 181.8 160 62.5
Gorai.004G173800 Gossypium raimondii HOM05D007026 ORTHO05D008493 7.8e-44 181.4 205 54.1
AL3G24320 Arabidopsis lyrata HOM05D007026 ORTHO05D008493 1.0e-43 181.0 171 58.5
Gohir.D08G166400 Gossypium hirsutum HOM05D007026 ORTHO05D008493 1.3e-43 180.6 224 51.8
Atru.chr11.2644 Acer truncatum HOM05D007026 ORTHO05D008493 2.9e-43 179.5 199 55.8
Sc11g0009270 Simmondsia chinensis HOM05D007026 ORTHO05D008493 3.9e-43 179.1 189 52.4
Cpa.g.sc245.8 Carica papaya HOM05D007026 ORTHO05D008493 5.0e-43 178.7 231 46.3
Nitab4.5_0005198g0030 Nicotiana tabacum HOM05D007026 ORTHO05D008493 1.5e-42 177.2 134 67.9
Carub.0003s1200 Capsella rubella HOM05D007026 ORTHO05D008493 1.9e-42 176.8 171 56.7
BcaC01g04025 Brassica carinata HOM05D007026 ORTHO05D008493 9.5e-42 174.5 151 59.6
BolC3t16854H Brassica oleracea HOM05D007026 ORTHO05D008493 9.5e-42 174.5 151 59.6
Migut.A00762 Erythranthe guttata HOM05D007026 ORTHO05D008493 2.1e-41 173.3 186 56.5
unitig_0.g1578 Utricularia gibba HOM05D007026 ORTHO05D008493 2.1e-41 173.3 190 54.2
Lj7P569T60 Lonicera japonica HOM05D007026 ORTHO05D008493 8.0e-41 171.4 166 57.8
Migut.N01474 Erythranthe guttata HOM05D007026 ORTHO05D008493 1.4e-40 170.6 211 51.2
MD02G1314200 Malus domestica HOM05D007026 ORTHO05D008493 1.4e-40 170.6 210 51.4
ATR0605G064 Amborella trichopoda HOM05D007026 ORTHO05D008493 1.8e-40 170.2 194 52.1
DCAR_029660 Daucus carota HOM05D007026 ORTHO05D008493 1.8e-40 170.2 142 62.7
CARHR087160 Cardamine hirsuta HOM05D007026 ORTHO05D008493 4.0e-40 169.1 150 60.0
AT3G12650 Arabidopsis thaliana HOM05D007026 ORTHO05D008493 5.2e-40 168.7 218 50.0
Thhalv10021417m.g Eutrema salsugineum HOM05D007026 ORTHO05D008493 8.9e-40 167.9 136 63.2
C03p45790 Brassica napus HOM05D007026 ORTHO05D008493 1.2e-39 167.5 230 45.7
COL.COLO4_23920 Corchorus olitorius HOM05D007026 ORTHO05D008493 1.2e-39 167.5 151 57.0
ECA248G3415 Erigeron canadensis HOM05D007026 ORTHO05D008493 1.2e-39 167.5 204 50.0
Sed0012425 Sechium edule HOM05D007026 ORTHO05D008493 2.0e-39 166.8 243 49.0
A03p37740 Brassica napus HOM05D007026 ORTHO05D008493 3.4e-39 166.0 222 46.8
BraA03t12929Z Brassica rapa HOM05D007026 ORTHO05D008493 3.4e-39 166.0 222 46.8
Lsat_1_v5_gn_1_108360 Lactuca sativa HOM05D007026 ORTHO05D008493 5.8e-39 165.2 258 46.1
PSO339G4493 Papaver somniferum HOM05D007026 ORTHO05D008493 7.5e-39 164.9 233 47.2
SHI26926 Sapria himalayana HOM05D007026 ORTHO05D008493 1.3e-38 164.1 192 51.0
Sp3g10790 Schrenkiella parvula HOM05D007026 ORTHO05D008493 1.3e-38 164.1 150 58.0
Aa31LG3G20 Aethionema arabicum HOM05D007026 ORTHO05D008493 1.7e-38 163.7 139 61.2
Aqoxy1G00217 Aquilegia oxysepala HOM05D007026 ORTHO05D008493 2.2e-38 163.3 208 48.1
HPP92_022795 Vanilla planifolia HOM05D007026 ORTHO05D008493 2.2e-38 163.3 139 61.2
MBI01_g27619_MAGBIO Magnolia biondii HOM05D007026 ORTHO05D008493 4.9e-38 162.2 189 50.8
BcaB04g18713 Brassica carinata HOM05D007026 ORTHO05D008493 1.4e-37 160.6 198 48.0
FvH4_7g00860 Fragaria vesca HOM05D007026 ORTHO05D008493 1.4e-37 160.6 159 58.5
HanXRQChr06g0185391 Helianthus annuus HOM05D007026 ORTHO05D008493 3.2e-37 159.5 240 46.2
Actinidia20675 Actinidia chinensis HOM05D007026 ORTHO05D008493 9.2e-37 157.9 132 62.9
Dinv43456 Davidia involucrata HOM05D007026 ORTHO05D008493 1.2e-36 157.5 189 50.8
Dinv09365 Davidia involucrata HOM05D007026 ORTHO05D008493 2.7e-36 156.4 182 51.6
A05p36850 Brassica napus HOM05D007026 ORTHO05D008493 3.5e-36 156.0 234 46.2
BcaB06g25527 Brassica carinata HOM05D007026 ORTHO05D008493 6.0e-36 155.2 199 49.7
BraA05t22486Z Brassica rapa HOM05D007026 ORTHO05D008493 3.0e-35 152.9 234 45.3
RcHm_v2.0_Chr1g0315371 Rosa chinensis HOM05D007026 ORTHO05D008493 1.7e-30 137.1 120 60.0
Gohir.A08G145400 Gossypium hirsutum HOM05D007026 ORTHO05D008493 3.7e-30 136.0 160 51.2
Zm00001eb189290 Zea mays HOM05D007026 ORTHO05D008493 4.9e-30 135.6 179 46.4
PSO384G4663 Papaver somniferum HOM05D007026 ORTHO05D008493 6.4e-30 135.2 193 47.7
RcHm_v2.0_Chr1g0315191 Rosa chinensis HOM05D007026 ORTHO05D008493 8.3e-30 134.8 117 59.8
RcHm_v2.0_Chr1g0315521 Rosa chinensis HOM05D007026 ORTHO05D008493 1.9e-29 133.7 120 59.2
EL10Ac2g04312 Beta vulgaris HOM05D007026 ORTHO05D008493 2.4e-29 133.3 134 53.7
Os02g0718000 Oryza sativa ssp. japonica HOM05D007026 ORTHO05D008493 7.1e-29 131.7 180 46.7
RcHm_v2.0_Chr1g0315011 Rosa chinensis HOM05D007026 ORTHO05D008493 1.6e-28 130.6 120 59.2
BcaC05g29251 Brassica carinata HOM05D007026 ORTHO05D008493 1.7e-27 127.1 162 51.2
BolC5t34196H Brassica oleracea HOM05D007026 ORTHO05D008493 8.6e-27 124.8 109 60.6
Eucgr.J01262 Eucalyptus grandis HOM05D007026 ORTHO05D008493 3.3e-26 122.9 116 56.0
BcaB08g35591 Brassica carinata HOM05D007026 ORTHO05D008493 1.4e-21 107.5 137 48.9
Nitab4.5_0004511g0060 Nicotiana tabacum HOM05D007026 ORTHO05D008493 6.6e-19 98.6 68 67.6
TPR.G17515 Trifolium pratense HOM05D007026 ORTHO05D008493 3.3e-18 96.3 252 36.9
AL7G43500 Arabidopsis lyrata HOM05D007026 ORTHO05D008493 3.6e-17 92.8 77 58.4
AUR62009374 Chenopodium quinoa HOM05D007026 ORTHO05D008493 9.9e-15 84.7 109 43.1
SMO147G0317 Selaginella moellendorffii HOM05D007026 ORTHO05D008493 1.9e-13 80.5 141 36.9
Pp3c2_10070 Physcomitrium patens HOM05D007026 ORTHO05D008493 5.4e-13 79.0 184 33.7
Nitab4.5_0000052g0150 Nicotiana tabacum HOM05D007026 ORTHO05D008493 7.8e-12 75.1 86 53.5
TPR.G28471 Trifolium pratense HOM05D007026 ORTHO05D008493 9.6e-10 68.2 150 40.7
Mapoly0153s0019 Marchantia polymorpha HOM05D007026 ORTHO05D008493 2.8e-09 66.6 149 31.5
C05p55310 Brassica napus HOM05D007026 ORTHO05D008493 2.6e-07 60.1 45 71.1


User provided reference genes

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