Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.011G188500 Phaseolus vulgaris HOM05D003737 ORTHO05D004640 3.0e-260 901.4 466 100.0
VMungo0647G1094 Vigna mungo HOM05D003737 ORTHO05D004640 8.2e-234 813.5 466 89.5
Glyma.13G185300 Glycine max HOM05D003737 ORTHO05D004640 1.3e-223 779.6 467 85.7
Glyma.15G223100 Glycine max HOM05D003737 ORTHO05D004640 3.0e-220 768.5 465 85.2
Lj3g0019804 Lotus japonicus HOM05D003737 ORTHO05D004640 2.0e-184 649.4 466 72.5
Medtr8g043510 Medicago truncatula HOM05D003737 ORTHO05D004640 7.1e-177 624.4 471 69.4
Lalb_Chr01g0007591 Lupinus albus HOM05D003737 ORTHO05D004640 4.6e-176 621.7 476 70.6
Psat4g141920 Pisum sativum HOM05D003737 ORTHO05D004640 7.3e-174 614.4 473 68.9
Lalb_Chr03g0032471 Lupinus albus HOM05D003737 ORTHO05D004640 4.6e-168 595.1 476 67.4
ClCG08G008580 Citrullus lanatus HOM05D003737 ORTHO05D004640 1.4e-156 557.0 477 62.7
MELO3C019928.2 Cucumis melo HOM05D003737 ORTHO05D004640 3.4e-155 552.4 477 62.5
CsaV3_6G004570 Cucumis sativus L. HOM05D003737 ORTHO05D004640 6.4e-154 548.1 478 62.3
Manes.05G191000 Manihot esculenta HOM05D003737 ORTHO05D004640 6.6e-151 538.1 480 62.3
Sed0006452 Sechium edule HOM05D003737 ORTHO05D004640 2.6e-147 526.2 476 60.5
Eucgr.J00319 Eucalyptus grandis HOM05D003737 ORTHO05D004640 3.4e-147 525.8 470 62.1
Cfa010430 Carpinus fangiana HOM05D003737 ORTHO05D004640 1.3e-146 523.9 475 61.7
Sed0018433 Sechium edule HOM05D003737 ORTHO05D004640 1.7e-146 523.5 470 60.9
CiPaw.13G048500 Carya illinoinensis HOM05D003737 ORTHO05D004640 2.9e-146 522.7 477 60.8
PGR044G1985 Punica granatum HOM05D003737 ORTHO05D004640 1.1e-145 520.8 470 60.2
Atru.chr12.1119 Acer truncatum HOM05D003737 ORTHO05D004640 6.7e-143 511.5 470 60.2
arahy.Tifrunner.gnm1.ann1.J916II Arachis hypogaea HOM05D003737 ORTHO05D004640 1.1e-142 510.8 480 59.8
arahy.Tifrunner.gnm1.ann1.3J71J7 Arachis hypogaea HOM05D003737 ORTHO05D004640 1.5e-142 510.4 480 59.4
CiPaw.14G038200 Carya illinoinensis HOM05D003737 ORTHO05D004640 1.9e-142 510.0 476 62.6
Dinv20457 Davidia involucrata HOM05D003737 ORTHO05D004640 3.3e-142 509.2 475 60.2
Duzib128G0945 Durio zibethinus HOM05D003737 ORTHO05D004640 3.3e-142 509.2 474 61.2
Gohir.A06G171900 Gossypium hirsutum HOM05D003737 ORTHO05D004640 4.3e-142 508.8 479 60.3
Gohir.D06G180700 Gossypium hirsutum HOM05D003737 ORTHO05D004640 1.3e-141 507.3 479 60.3
Gorai.010G212200 Gossypium raimondii HOM05D003737 ORTHO05D004640 1.3e-141 507.3 479 60.8
COL.COLO4_05028 Corchorus olitorius HOM05D003737 ORTHO05D004640 1.2e-139 500.7 479 59.9
Duzib106G0442 Durio zibethinus HOM05D003737 ORTHO05D004640 2.0e-139 500.0 478 60.0
Cpa.g.sc33.135 Carica papaya HOM05D003737 ORTHO05D004640 4.5e-139 498.8 471 59.9
MD07G1053000 Malus domestica HOM05D003737 ORTHO05D004640 5.8e-139 498.4 473 60.9
Prupe.2G056900 Prunus persica HOM05D003737 ORTHO05D004640 5.8e-139 498.4 477 59.7
QL04p051647 Quercus lobata HOM05D003737 ORTHO05D004640 2.2e-138 496.5 481 61.3
MD02G1266700 Malus domestica HOM05D003737 ORTHO05D004640 2.9e-138 496.1 473 59.4
Gorai.012G020700 Gossypium raimondii HOM05D003737 ORTHO05D004640 3.8e-138 495.7 473 60.3
TWI34G0525 Tripterygium wilfordii HOM05D003737 ORTHO05D004640 1.1e-137 494.2 465 58.9
CSS0038854 Camellia sinensis var. sinensis HOM05D003737 ORTHO05D004640 1.4e-137 493.8 470 59.6
CSS0046027 Camellia sinensis var. sinensis HOM05D003737 ORTHO05D004640 1.4e-137 493.8 470 59.6
Gohir.D04G017900 Gossypium hirsutum HOM05D003737 ORTHO05D004640 1.4e-137 493.8 473 60.3
Potri.010G247900 Populus trichocarpa HOM05D003737 ORTHO05D004640 4.2e-137 492.3 473 59.0
Thecc.10G131100 Theobroma cacao HOM05D003737 ORTHO05D004640 7.1e-137 491.5 475 58.9
Ca_24114_v3 Cicer arietinum L. HOM05D003737 ORTHO05D004640 6.0e-136 488.4 371 70.6
Potri.008G010900 Populus trichocarpa HOM05D003737 ORTHO05D004640 1.0e-135 487.6 473 56.4
TWI32G0890 Tripterygium wilfordii HOM05D003737 ORTHO05D004640 1.3e-135 487.3 469 58.4
TAR633G0465 Trochodendron aralioides HOM05D003737 ORTHO05D004640 3.9e-135 485.7 484 55.8
CANSAT78G1307 Cannabis sativa HOM05D003737 ORTHO05D004640 6.7e-135 485.0 473 57.1
TPR.G25035 Trifolium pratense HOM05D003737 ORTHO05D004640 1.1e-134 484.2 345 70.7
Hma1.2p1_0233F.1_g098040 Hydrangea macrophylla HOM05D003737 ORTHO05D004640 1.5e-134 483.8 480 57.7
Sc09g0004980 Simmondsia chinensis HOM05D003737 ORTHO05D004640 1.9e-134 483.4 478 58.6
Gohir.A05G398100 Gossypium hirsutum HOM05D003737 ORTHO05D004640 3.3e-134 482.6 470 58.9
Sabra10G0193400 Salix brachista HOM05D003737 ORTHO05D004640 3.7e-133 479.2 472 57.2
Haze_03384 Corylus avellana HOM05D003737 ORTHO05D004640 4.8e-133 478.8 601 49.1
CANSAT56G0630 Cannabis sativa HOM05D003737 ORTHO05D004640 8.2e-133 478.0 472 56.8
Lj9C660G5 Lonicera japonica HOM05D003737 ORTHO05D004640 1.7e-130 470.3 475 57.3
Actinidia12270 Actinidia chinensis HOM05D003737 ORTHO05D004640 2.5e-129 466.5 481 57.4
RcHm_v2.0_Chr1g0330551 Rosa chinensis HOM05D003737 ORTHO05D004640 4.2e-129 465.7 466 55.6
Sabra08G0006600 Salix brachista HOM05D003737 ORTHO05D004640 1.2e-128 464.2 476 54.4
FAN06G1525 Fragaria x ananassa HOM05D003737 ORTHO05D004640 1.1e-126 457.6 467 55.5
FvH4_7g04870 Fragaria vesca HOM05D003737 ORTHO05D004640 2.5e-126 456.4 467 55.7
FAN10G1609 Fragaria x ananassa HOM05D003737 ORTHO05D004640 9.7e-126 454.5 464 55.6
TAR636G0393 Trochodendron aralioides HOM05D003737 ORTHO05D004640 1.3e-125 454.1 485 54.0
Actinidia31420 Actinidia chinensis HOM05D003737 ORTHO05D004640 2.2e-125 453.4 475 55.6
Hund06832 Selenicereus undatus HOM05D003737 ORTHO05D004640 4.2e-121 439.1 504 51.8
MBI19_g24737_MAGBIO Magnolia biondii HOM05D003737 ORTHO05D004640 7.2e-121 438.3 473 53.1
RcHm_v2.0_Chr1g0324281 Rosa chinensis HOM05D003737 ORTHO05D004640 3.9e-119 432.6 464 52.6
Rhsim07G0072700 Rhododendron simsii HOM05D003737 ORTHO05D004640 1.7e-117 427.2 472 54.7
vmacro13791 Vaccinium macrocarpon HOM05D003737 ORTHO05D004640 6.3e-117 425.2 541 48.4
TWI63G1132 Tripterygium wilfordii HOM05D003737 ORTHO05D004640 1.4e-116 424.1 433 57.0
EL10Ac4g08805 Beta vulgaris HOM05D003737 ORTHO05D004640 7.7e-115 418.3 471 51.6
Duzib128G0026 Durio zibethinus HOM05D003737 ORTHO05D004640 1.7e-114 417.2 398 58.0
Thhalv10013430m.g Eutrema salsugineum HOM05D003737 ORTHO05D004640 6.5e-114 415.2 476 50.4
C09p71760 Brassica napus HOM05D003737 ORTHO05D004081 4.2e-113 412.5 475 49.9
Peaxi162Scf00220g00010 Petunia axillaris HOM05D003737 ORTHO05D004640 1.2e-112 411.0 466 51.1
BolC9t59927H Brassica oleracea HOM05D003737 ORTHO05D004081 1.6e-112 410.6 475 49.7
CARHR208270 Cardamine hirsuta HOM05D003737 ORTHO05D004640 2.7e-112 409.8 480 50.6
Thhalv10020697m.g Eutrema salsugineum HOM05D003737 ORTHO05D004640 2.0e-110 403.7 474 51.1
PSO675G8349 Papaver somniferum HOM05D003737 ORTHO05D004640 4.4e-110 402.5 492 50.0
Oeu013042.2 Olea europaea HOM05D003737 ORTHO05D004640 5.7e-110 402.1 517 47.8
DCAR_003288 Daucus carota HOM05D003737 ORTHO05D004640 9.7e-110 401.4 480 51.0
BraA10t45159Z Brassica rapa HOM05D003737 ORTHO05D004081 4.8e-109 399.1 476 48.9
A10p31150 Brassica napus HOM05D003737 ORTHO05D004081 1.1e-108 397.9 476 48.9
MSTRG.20485 Avicennia marina HOM05D003737 ORTHO05D004640 1.4e-108 397.5 473 50.3
Aa31LG3G3660 Aethionema arabicum HOM05D003737 ORTHO05D004640 3.1e-108 396.4 482 50.0
AUR62041279 Chenopodium quinoa HOM05D003737 ORTHO05D004640 5.3e-108 395.6 479 50.1
AL3G22200 Arabidopsis lyrata HOM05D003737 ORTHO05D004640 7.0e-108 395.2 472 50.4
AL532U10020 Arabidopsis lyrata HOM05D003737 ORTHO05D004640 1.2e-107 394.4 472 50.4
AT3G10730 Arabidopsis thaliana HOM05D003737 ORTHO05D004640 3.5e-107 392.9 470 50.0
AL6G14700 Arabidopsis lyrata HOM05D003737 ORTHO05D004640 4.5e-107 392.5 478 50.2
AT5G04990 Arabidopsis thaliana HOM05D003737 ORTHO05D004640 1.0e-106 391.3 475 50.5
Carub.0003s0996 Capsella rubella HOM05D003737 ORTHO05D004640 1.3e-106 391.0 471 49.9
CARHR085310 Cardamine hirsuta HOM05D003737 ORTHO05D004640 1.3e-106 391.0 476 49.2
SHI21216 Sapria himalayana HOM05D003737 ORTHO05D004640 1.3e-106 391.0 497 48.1
PGSC0003DMG402027528 Solanum tuberosum HOM05D003737 ORTHO05D004640 3.8e-106 389.4 466 48.9
HPP92_021189 Vanilla planifolia HOM05D003737 ORTHO05D004640 2.5e-105 386.7 437 50.8
PSO170G6472 Papaver somniferum HOM05D003737 ORTHO05D004640 2.1e-104 383.6 461 48.6
Sopen01g040480 Solanum pennellii HOM05D003737 ORTHO05D004640 2.1e-104 383.6 472 49.2
C05p57390 Brassica napus HOM05D005327 ORTHO05D006655 2.7e-104 383.3 474 48.9
BolC5t34394H Brassica oleracea HOM05D003737 ORTHO05D004640 2.7e-104 383.3 481 48.0
BraA05t22639Z Brassica rapa HOM05D003737 ORTHO05D004640 6.1e-104 382.1 478 48.7
Sp6g37810 Schrenkiella parvula HOM05D003737 ORTHO05D004640 8.0e-104 381.7 462 48.7
Solyc01g096780.4 Solanum lycopersicum HOM05D003737 ORTHO05D004640 1.0e-103 381.3 472 48.5
A05p38490 Brassica napus HOM05D005327 ORTHO05D006655 1.4e-103 380.9 480 49.2
Nitab4.5_0004903g0010 Nicotiana tabacum HOM05D003737 ORTHO05D004640 3.0e-103 379.8 473 49.0
Ah.04g162720 Amaranthus hybridus HOM05D000296 ORTHO05D000175 6.7e-103 378.6 530 45.3
PSO782G4010 Papaver somniferum HOM05D003737 ORTHO05D004640 6.7e-103 378.6 461 48.6
Carub.0006s0393 Capsella rubella HOM05D003737 ORTHO05D004640 1.1e-102 377.9 475 48.6
Aqoxy2G00024 Aquilegia oxysepala HOM05D003737 ORTHO05D004640 2.6e-102 376.7 495 46.5
Aa31LG11G5690 Aethionema arabicum HOM05D003737 ORTHO05D004640 9.7e-102 374.8 476 47.7
Migut.B01171 Erythranthe guttata HOM05D003737 ORTHO05D004640 1.7e-101 374.0 464 50.4
PSO017G3614 Papaver somniferum HOM05D003737 ORTHO05D004640 3.7e-101 372.9 465 47.5
Nitab4.5_0002687g0030 Nicotiana tabacum HOM05D003737 ORTHO05D004640 4.1e-100 369.4 473 48.0
ATR0307G049 Amborella trichopoda HOM05D003737 ORTHO05D004640 1.2e-99 367.9 476 47.3
HanXRQChr03g0073711 Helianthus annuus HOM05D003737 ORTHO05D004640 1.6e-99 367.5 463 47.5
PSO170G3077 Papaver somniferum HOM05D003737 ORTHO05D004640 5.9e-99 365.5 464 47.6
ECA240G2259 Erigeron canadensis HOM05D003737 ORTHO05D004640 1.1e-97 361.3 471 48.0
SGA_v2.0_scaffold309G48158 Striga asiatica HOM05D003737 ORTHO05D004640 1.9e-97 360.5 465 48.6
Ciclev10001582m.g Citrus clementina HOM05D003737 ORTHO05D004640 7.2e-97 358.6 372 57.5
Sp3g09060 Schrenkiella parvula HOM05D003737 ORTHO05D004640 1.2e-96 357.8 475 46.7
BcaB05g21740 Brassica carinata HOM05D003737 ORTHO05D004640 3.6e-96 356.3 476 45.6
SGA_v2.0_scaffold182G39819 Striga asiatica HOM05D003737 ORTHO05D004640 1.0e-95 354.8 464 49.1
THA.LOC104823158 Tarenaya hassleriana HOM05D003737 ORTHO05D004640 1.2e-94 351.3 471 46.5
CDE09G1399 Ceratophyllum demersum HOM05D003737 ORTHO05D004640 2.8e-93 346.7 431 49.9
CANSAT78G0409 Cannabis sativa HOM05D003737 ORTHO05D004640 1.1e-92 344.7 278 63.7
unitig_749.g13793 Utricularia gibba HOM05D003737 ORTHO05D004640 1.4e-92 344.4 360 52.2
Os05g0270200 Oryza sativa ssp. japonica HOM05D003737 ORTHO05D004640 5.5e-89 332.4 473 44.4
CAN.G134.41 Capsicum annuum HOM05D003737 ORTHO05D004640 9.4e-89 331.6 304 57.2
HanXRQChr09g0247521 Helianthus annuus HOM05D003737 ORTHO05D004640 1.4e-87 327.8 416 45.9
Os01g0267600 Oryza sativa ssp. japonica HOM05D003737 ORTHO05D004640 6.8e-87 325.5 367 49.3
FAN03G1506 Fragaria x ananassa HOM05D003737 ORTHO05D004640 1.3e-85 321.2 450 45.1
unitig_22.g5336 Utricularia gibba HOM05D003737 ORTHO05D004640 1.4e-84 317.8 354 49.2
Zm00001eb128110 Zea mays HOM05D003737 ORTHO05D004640 4.1e-84 316.2 421 45.6
BcaC06g32213 Brassica carinata HOM05D003737 ORTHO05D004640 4.0e-79 299.7 431 44.5
vmacro23127 Vaccinium macrocarpon HOM05D003737 ORTHO05D002937 5.2e-79 299.3 367 46.9
Zm00001eb233650 Zea mays HOM05D003737 ORTHO05D004640 2.0e-78 297.4 471 41.4
SEGI_05544 Sequoiadendron giganteum HOM05D003737 ORTHO05D004640 2.6e-78 297.0 480 41.9
ECA236G2275 Erigeron canadensis HOM05D003737 ORTHO05D004640 6.4e-77 292.4 308 51.6
Nn6g33270 Nelumbo nucifera HOM05D003737 ORTHO05D004640 5.9e-75 285.8 382 47.1
Lsat_1_v5_gn_1_105000 Lactuca sativa HOM05D003737 ORTHO05D004640 2.3e-74 283.9 358 45.3
CDE08G0077 Ceratophyllum demersum HOM05D003737 ORTHO05D004640 6.6e-74 282.3 356 49.2
Lsat_1_v5_gn_1_105040 Lactuca sativa HOM05D003737 ORTHO05D004640 8.0e-72 275.4 358 43.9
DCAR_022276 Daucus carota HOM05D003737 ORTHO05D004640 5.8e-70 269.2 245 55.9
DCAR_022277 Daucus carota HOM05D003737 ORTHO05D004640 2.2e-69 267.3 212 63.7
QL93p0223_0017 Quercus lobata HOM05D003737 ORTHO05D004640 1.9e-68 264.2 399 44.1
SMO266G0096 Selaginella moellendorffii HOM05D003737 ORTHO05D004640 1.9e-68 264.2 310 44.8
SMO104G0002 Selaginella moellendorffii HOM05D003737 ORTHO05D004640 3.2e-68 263.5 310 44.8
Lsat_1_v5_gn_7_65181 Lactuca sativa HOM05D003737 ORTHO05D004640 1.7e-66 257.7 370 43.5
Mapoly0147s0033 Marchantia polymorpha HOM05D003737 ORTHO05D004640 5.6e-65 252.7 396 39.9
SMO356G0438 Selaginella moellendorffii HOM05D003737 ORTHO05D004640 3.4e-62 243.4 304 44.4
Pp3c7_4170 Physcomitrium patens HOM05D003737 ORTHO05D004640 4.9e-61 239.6 368 41.6
unitig_26.g9749 Utricularia gibba HOM05D003737 ORTHO05D004640 1.6e-56 224.6 258 46.1
SMO119G0482 Selaginella moellendorffii HOM05D003737 ORTHO05D004640 4.7e-56 223.0 292 42.1
GSVIVG01001935001 Vitis vinifera HOM05D003737 ORTHO05D004640 4.7e-56 223.0 144 74.3
BcaC06g32214 Brassica carinata HOM05D003737 ORTHO05D004640 1.4e-55 221.5 347 41.8
Pp3c11_22530 Physcomitrium patens HOM05D003737 ORTHO05D004640 6.8e-55 219.2 471 35.7
HPP92_012444 Vanilla planifolia HOM05D003737 ORTHO05D004640 2.2e-53 214.2 365 40.0
DCAR_014025 Daucus carota HOM05D003737 ORTHO05D004640 8.6e-50 202.2 259 47.5
AagrBONN_evm.TU.Sc2ySwM_344.2065 Anthoceros agrestis HOM05D003737 ORTHO05D004640 3.3e-49 200.3 406 36.7
BolC1t05361H Brassica oleracea HOM05D003737 ORTHO05D004640 4.3e-49 199.9 272 45.2
RcHm_v2.0_Chr2g0101681 Rosa chinensis HOM05D003737 ORTHO05D004640 3.6e-48 196.8 197 52.3
PGR083G2251 Punica granatum HOM05D003737 ORTHO05D004640 1.1e-47 195.3 319 38.2
SEGI_23640 Sequoiadendron giganteum HOM05D003737 ORTHO05D004640 1.8e-47 194.5 204 50.0
Lsat_1_v5_gn_4_103680 Lactuca sativa HOM05D003737 ORTHO05D004640 7.6e-46 189.1 196 51.0
Ciclev10003487m.g Citrus clementina HOM05D003737 ORTHO05D004640 1.5e-38 164.9 102 76.5
RcHm_v2.0_Chr2g0101131 Rosa chinensis HOM05D003737 ORTHO05D004640 7.1e-36 156.0 139 56.1
Phvul.007G106800 Phaseolus vulgaris HOM05D003737 ORTHO05D004640 6.6e-34 149.4 82 87.8
FvH4_1g13360 Fragaria vesca HOM05D003737 ORTHO05D004640 9.0e-31 139.0 218 41.7
SGA_v2.0_scaffold195G40842 Striga asiatica HOM05D003737 ORTHO05D004640 9.3e-28 129.0 170 44.1
AUR62034111 Chenopodium quinoa HOM05D003737 ORTHO05D004640 4.6e-27 126.7 108 61.1
Cfa015121 Carpinus fangiana HOM05D003737 ORTHO05D004640 1.1e-25 122.1 76 73.7
MCO09G802 Micromonas commoda HOM05D003737 ORTHO05D004640 6.2e-24 116.3 197 37.6
PRCOL_00004494 Prasinoderma coloniale HOM05D003737 ORTHO05D004640 1.4e-23 115.2 189 38.6
FAN23G2857 Fragaria x ananassa HOM05D003737 ORTHO05D004640 3.8e-21 107.1 186 36.6
Thhalv10015457m.g Eutrema salsugineum HOM05D003737 ORTHO05D004640 1.4e-20 105.1 86 62.8
Haze_10688 Corylus avellana HOM05D003737 ORTHO05D004640 3.2e-20 104.0 125 49.6
C08p01570 Brassica napus HOM05D003737 ORTHO05D004640 1.6e-16 91.7 73 58.9
Atru.chr12.1692 Acer truncatum HOM05D003737 ORTHO05D004640 1.4e-15 88.6 63 66.7
CAN.G481.43 Capsicum annuum HOM05D000879 ORTHO05D002043 7.4e-09 66.2 52 59.6
GSVIVG01001936001 Vitis vinifera HOM05D003737 ORTHO05D004640 2.6e-06 57.8 73 56.2


User provided reference genes

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