Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.011G179100 Phaseolus vulgaris HOM05D007061 ORTHO05D009017 6.0e-222 773.9 388 100.0
Glyma.08G234700 Glycine max HOM05D007061 ORTHO05D009017 4.8e-211 737.6 388 94.1
Psat4g170560 Pisum sativum HOM05D007061 ORTHO05D009017 2.5e-204 715.3 388 89.9
TPR.G9404 Trifolium pratense HOM05D007061 ORTHO05D009017 2.1e-203 712.2 388 91.0
Lalb_Chr03g0031881 Lupinus albus HOM05D007061 ORTHO05D009017 3.7e-203 711.4 390 90.5
Ca_23083_v3 Cicer arietinum L. HOM05D007061 ORTHO05D009017 4.9e-200 701.0 388 89.4
Lj3g0003258 Lotus japonicus HOM05D007061 ORTHO05D009017 2.7e-198 695.3 388 87.9
arahy.Tifrunner.gnm1.ann1.69KP4R Arachis hypogaea HOM05D007061 ORTHO05D009017 1.7e-192 676.0 386 86.5
Potri.010G173800 Populus trichocarpa HOM05D007061 ORTHO05D009017 2.4e-186 655.6 386 80.1
Gohir.D07G048400 Gossypium hirsutum HOM05D007061 ORTHO05D009017 1.1e-183 646.7 386 79.0
QL04p093744 Quercus lobata HOM05D007061 ORTHO05D009017 1.1e-183 646.7 416 76.2
Gorai.001G051600 Gossypium raimondii HOM05D007061 ORTHO05D009017 2.5e-183 645.6 386 78.8
CiPaw.11G057200 Carya illinoinensis HOM05D007061 ORTHO05D009017 1.6e-182 642.9 386 79.0
Sabra10G0133700 Salix brachista HOM05D007061 ORTHO05D009017 1.6e-182 642.9 396 77.3
Duzib213G0730 Durio zibethinus HOM05D007061 ORTHO05D009017 4.6e-182 641.3 386 78.2
MD10G1216400 Malus domestica HOM05D007061 ORTHO05D009017 5.1e-181 637.9 386 78.5
Eucgr.K03462 Eucalyptus grandis HOM05D007061 ORTHO05D009017 8.8e-181 637.1 386 78.5
FvH4_3g14100 Fragaria vesca HOM05D007061 ORTHO05D009017 1.1e-180 636.7 386 78.5
CsaV3_6G013460 Cucumis sativus L. HOM05D007061 ORTHO05D009017 1.9e-180 636.0 386 79.8
Prupe.4G128300 Prunus persica HOM05D007061 ORTHO05D009017 4.3e-180 634.8 386 78.2
CANSAT35G1572 Cannabis sativa HOM05D007061 ORTHO05D009017 5.7e-180 634.4 386 77.7
RcHm_v2.0_Chr5g0023411 Rosa chinensis HOM05D007061 ORTHO05D009017 3.7e-179 631.7 386 78.8
GSVIVG01036723001 Vitis vinifera HOM05D007061 ORTHO05D009017 1.4e-178 629.8 386 77.2
THA.LOC104810275 Tarenaya hassleriana HOM05D007061 ORTHO05D009017 1.8e-178 629.4 386 76.4
Ciclev10004974m.g Citrus clementina HOM05D007061 ORTHO05D009017 6.9e-178 627.5 386 77.7
Nn7g38366 Nelumbo nucifera HOM05D007061 ORTHO05D009017 4.5e-177 624.8 386 77.7
ClCG02G018710 Citrullus lanatus HOM05D007061 ORTHO05D009017 7.7e-177 624.0 400 77.2
TAR627G0473 Trochodendron aralioides HOM05D007061 ORTHO05D009017 1.0e-176 623.6 386 76.9
Aqoxy2G00253 Aquilegia oxysepala HOM05D007061 ORTHO05D009017 3.6e-174 615.1 386 75.9
Manes.16G047900 Manihot esculenta HOM05D007061 ORTHO05D009017 4.7e-174 614.8 375 78.9
PSO675G0660 Papaver somniferum HOM05D007061 ORTHO05D009017 1.5e-172 609.8 386 75.4
PGR044G2241 Punica granatum HOM05D007061 ORTHO05D009017 2.0e-172 609.4 388 75.3
Aa31LG10G30 Aethionema arabicum HOM05D007061 ORTHO05D009017 3.3e-172 608.6 386 74.6
Carub.0001s4486 Capsella rubella HOM05D007061 ORTHO05D009017 4.4e-172 608.2 386 74.9
CARHR045980 Cardamine hirsuta HOM05D007061 ORTHO05D009017 9.7e-172 607.1 386 74.6
arahy.Tifrunner.gnm1.ann1.RLLR5G Arachis hypogaea HOM05D007061 ORTHO05D009017 1.3e-171 606.7 599 56.6
CSS0041382 Camellia sinensis var. sinensis HOM05D007061 ORTHO05D009017 1.7e-171 606.3 386 75.4
AL1G64530 Arabidopsis lyrata HOM05D007061 ORTHO05D009017 2.2e-171 605.9 386 74.4
PSO675G3863 Papaver somniferum HOM05D007061 ORTHO05D009017 2.8e-171 605.5 386 74.4
Sp1g41850 Schrenkiella parvula HOM05D007061 ORTHO05D009017 3.1e-170 602.1 387 75.2
Hma1.2p1_0151F.1_g067030 Hydrangea macrophylla HOM05D007061 ORTHO05D009017 4.1e-170 601.7 386 75.4
A05p26620 Brassica napus HOM05D007061 ORTHO05D009017 5.3e-170 601.3 388 75.0
BraA05t21537Z Brassica rapa HOM05D007061 ORTHO05D009017 5.3e-170 601.3 388 75.0
ECA240G0752 Erigeron canadensis HOM05D007061 ORTHO05D009017 7.7e-169 597.4 388 75.5
Thhalv10011478m.g Eutrema salsugineum HOM05D007061 ORTHO05D009017 5.0e-168 594.7 386 73.6
HanXRQChr03g0080291 Helianthus annuus HOM05D007061 ORTHO05D009017 1.4e-167 593.2 389 74.6
C05p41210 Brassica napus HOM05D007061 ORTHO05D009017 1.6e-166 589.7 392 73.7
Lsat_1_v5_gn_7_70001 Lactuca sativa HOM05D007061 ORTHO05D009017 1.6e-166 589.7 387 74.2
Actinidia24658 Actinidia chinensis HOM05D007061 ORTHO05D009017 8.0e-166 587.4 381 73.0
ATR0763G190 Amborella trichopoda HOM05D007061 ORTHO05D009017 1.0e-165 587.0 388 72.9
BcaB02g10820 Brassica carinata HOM05D007061 ORTHO05D009017 5.2e-165 584.7 392 72.7
FAN11G3441 Fragaria x ananassa HOM05D007061 ORTHO05D009017 1.5e-159 566.6 349 77.1
Lj2A10G39 Lonicera japonica HOM05D007061 ORTHO05D009017 3.2e-159 565.5 412 67.7
Zm00001eb233280 Zea mays HOM05D007061 ORTHO05D009017 1.4e-157 560.1 388 70.4
vmacro11681 Vaccinium macrocarpon HOM05D007061 ORTHO05D009017 5.2e-157 558.1 435 63.7
unitig_37.g12195 Utricularia gibba HOM05D007061 ORTHO05D009017 4.8e-155 551.6 387 66.9
Cpa.g.sc32.92 Carica papaya HOM05D007061 ORTHO05D009017 5.3e-154 548.1 345 75.4
Cc05_g16540 Coffea canephora HOM05D007061 ORTHO05D009017 7.0e-154 547.7 347 76.1
SalBow8G1251 Salvia bowleyana HOM05D007061 ORTHO05D009017 7.7e-153 544.3 500 57.6
Os02g0173700 Oryza sativa ssp. japonica HOM05D007061 ORTHO05D009017 1.3e-152 543.5 368 70.4
Gohir.A07G044000 Gossypium hirsutum HOM05D007061 ORTHO05D009017 1.9e-151 539.7 386 69.7
FAN16G1770 Fragaria x ananassa HOM05D007061 ORTHO05D009017 2.0e-148 529.6 398 65.8
BcaC05g28094 Brassica carinata HOM05D007061 ORTHO05D009017 1.5e-143 513.5 402 65.9
DCAR_009658 Daucus carota HOM05D007061 ORTHO05D009017 1.2e-142 510.4 338 73.1
Atru.chr1.57 Acer truncatum HOM05D007061 ORTHO05D009017 1.5e-140 503.4 308 77.6
FAN25G0842 Fragaria x ananassa HOM05D007061 ORTHO05D009017 1.3e-139 500.4 386 64.8
MELO3C019630.2 Cucumis melo HOM05D007061 ORTHO05D009017 6.3e-139 498.0 299 81.3
Peaxi162Scf00452g00232 Petunia axillaris HOM05D007061 ORTHO05D009017 1.4e-138 496.9 386 63.7
Nitab4.5_0000029g0190 Nicotiana tabacum HOM05D007061 ORTHO05D009017 2.4e-138 496.1 386 63.7
SGA_v2.0_scaffold186G40180 Striga asiatica HOM05D007061 ORTHO05D009017 9.2e-138 494.2 390 63.8
Migut.M01505 Erythranthe guttata HOM05D007061 ORTHO05D009017 1.5e-135 486.9 393 62.3
CAN.G943.59 Capsicum annuum HOM05D007061 ORTHO05D009017 3.6e-134 482.3 386 63.2
SalBow8G1458 Salvia bowleyana HOM05D007061 ORTHO05D009017 5.2e-133 478.4 511 51.9
Pp3c22_13410 Physcomitrium patens HOM05D007061 ORTHO05D009017 2.6e-132 476.1 391 58.3
CDE01G0579 Ceratophyllum demersum HOM05D007061 ORTHO05D009017 1.4e-130 470.3 384 64.1
Dinv42463 Davidia involucrata HOM05D007061 ORTHO05D009017 7.0e-130 468.0 299 73.2
VMungo1127G1118 Vigna mungo HOM05D007061 ORTHO05D009017 1.2e-129 467.2 242 95.5
AagrBONN_evm.TU.Sc2ySwM_228.3482 Anthoceros agrestis HOM05D007061 ORTHO05D009017 3.5e-129 465.7 388 57.0
Nitab4.5_0002862g0050 Nicotiana tabacum HOM05D007061 ORTHO05D009017 2.3e-125 453.0 426 56.8
SMO145G0248 Selaginella moellendorffii HOM05D007061 ORTHO05D009017 3.1e-125 452.6 393 57.5
AUR62037650 Chenopodium quinoa HOM05D007061 ORTHO05D009017 7.5e-124 448.0 299 71.2
Mapoly0013s0085 Marchantia polymorpha HOM05D007061 ORTHO05D009017 9.2e-122 441.0 389 56.6
COL.COLO4_24973 Corchorus olitorius HOM05D007061 ORTHO05D009017 7.3e-111 404.8 386 55.2
Thecc.07G189200 Theobroma cacao HOM05D007061 ORTHO05D009017 4.0e-109 399.1 238 77.7
TWI59G0237 Tripterygium wilfordii HOM05D007061 ORTHO05D009017 8.9e-109 397.9 264 71.2
Sed0001021 Sechium edule HOM05D007061 ORTHO05D009017 1.1e-103 380.9 238 76.9
Haze_07765 Corylus avellana HOM05D007061 ORTHO05D009017 1.6e-97 360.5 301 62.1
Cre16.g649400 Chlamydomonas reinhardtii HOM05D007061 ORTHO05D009017 7.8e-97 358.2 423 44.7
Sc03g0005020 Simmondsia chinensis HOM05D007061 ORTHO05D009017 2.5e-95 353.2 239 71.1
BolC5t32863H Brassica oleracea HOM05D007061 ORTHO05D009017 8.4e-91 338.2 226 73.0
Rhsim06G0244100 Rhododendron simsii HOM05D007061 ORTHO05D009017 1.5e-84 317.4 315 52.4
PRCOL_00003223 Prasinoderma coloniale HOM05D007061 ORTHO05D009017 2.5e-82 310.1 409 40.1
arahy.Tifrunner.gnm1.ann1.R5CYRF Arachis hypogaea HOM05D007061 ORTHO05D009017 3.7e-78 296.2 175 84.0
MCO09G574 Micromonas commoda HOM05D007061 ORTHO05D009017 1.3e-75 287.7 442 38.0
AT1G54310 Arabidopsis thaliana HOM05D007061 ORTHO05D009017 2.7e-73 280.0 176 73.9
MD05G1238000 Malus domestica HOM05D007061 ORTHO05D009017 1.6e-70 270.8 170 80.6
SEGI_31810 Sequoiadendron giganteum HOM05D007061 ORTHO05D009017 2.0e-63 247.3 200 61.0
Cre09.g407900 Chlamydomonas reinhardtii HOM05D007061 ORTHO05D009017 9.7e-47 191.8 380 32.9
arahy.Tifrunner.gnm1.ann1.4L0SCR Arachis hypogaea HOM05D007061 ORTHO05D009017 1.8e-45 187.6 104 87.5
HPP92_028078 Vanilla planifolia HOM05D007061 ORTHO05D009017 7.0e-45 185.7 113 77.9
Rhsim06G0244000 Rhododendron simsii HOM05D007061 ORTHO05D009017 6.1e-41 172.6 101 77.2
Hma1.2p1_0151F.1_g067050 Hydrangea macrophylla HOM05D007061 ORTHO05D009017 8.8e-40 168.7 101 77.2
Actinidia26210 Actinidia chinensis HOM05D007061 ORTHO05D009017 1.2e-39 168.3 102 76.5
SEGI_33801 Sequoiadendron giganteum HOM05D007061 ORTHO05D009017 7.2e-34 149.1 101 64.4
SGA_v2.0_scaffold112G31643 Striga asiatica HOM05D007061 ORTHO05D009017 1.5e-23 114.8 59 89.8
SGA_v2.0_scaffold60G20904 Striga asiatica HOM05D007061 ORTHO05D009017 1.5e-23 114.8 59 89.8
HPP92_028076 Vanilla planifolia HOM05D007061 ORTHO05D009017 3.7e-22 110.2 53 92.5
RcHm_v2.0_Chr1g0324361 Rosa chinensis HOM05D007061 ORTHO05D009017 8.3e-22 109.0 55 89.1
AUR62041050 Chenopodium quinoa HOM05D007061 ORTHO05D009017 7.8e-20 102.4 61 77.0
Manes.04G057176 Manihot esculenta HOM05D007061 ORTHO05D005365 1.3e-11 75.1 45 80.0
Lsat_1_v5_gn_4_131100 Lactuca sativa HOM05D007061 ORTHO05D004266 1.1e-10 72.0 45 71.1
MCO14G211 Micromonas commoda HOM05D027329 ORTHO05D268215 1.1e-10 72.0 205 24.4
Lsat_1_v5_gn_0_28960 Lactuca sativa HOM05D004968 ORTHO05D005922 4.7e-09 66.6 46 76.1
Lsat_1_v5_gn_3_11400 Lactuca sativa HOM05D003461 ORTHO05D004386 8.9e-08 62.4 114 32.5
MD05G1238100 Malus domestica HOM05D007061 ORTHO05D009017 2.6e-07 60.8 41 68.3


User provided reference genes

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