Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.011G177400 Phaseolus vulgaris HOM05D006080 ORTHO05D007382 6.4e-174 614.8 535 100.0
Phvul.009G114250 Phaseolus vulgaris HOM05D006080 ORTHO05D007382 2.7e-164 582.8 535 96.6
VMungo1215G0155 Vigna mungo HOM05D006080 ORTHO05D007382 1.3e-134 484.2 535 84.3
Glyma.17G049100 Glycine max HOM05D006080 ORTHO05D007382 7.4e-130 468.4 535 85.6
Lj4g0003679 Lotus japonicus HOM05D006080 ORTHO05D007382 1.3e-105 387.9 541 74.3
TPR.G30187 Trifolium pratense HOM05D006080 ORTHO05D007382 2.3e-91 340.5 532 69.4
arahy.Tifrunner.gnm1.ann1.YW7MJY Arachis hypogaea HOM05D006080 ORTHO05D007382 1.8e-67 261.2 511 70.6
arahy.Tifrunner.gnm1.ann1.3R1N4J Arachis hypogaea HOM05D006080 ORTHO05D007382 8.9e-67 258.8 472 73.5
Medtr4g040410 Medicago truncatula HOM05D006080 ORTHO05D007382 1.3e-62 245.0 528 65.2
Lalb_Chr23g0276361 Lupinus albus HOM05D006080 ORTHO05D007382 7.6e-58 229.2 276 65.9
Psat1g133120 Pisum sativum HOM05D006080 ORTHO05D007382 1.2e-55 221.9 277 66.4
Lalb_Chr07g0181201 Lupinus albus HOM05D006080 ORTHO05D007382 4.6e-55 219.9 294 62.6
VMungo1309G1452 Vigna mungo HOM05D006080 ORTHO05D007382 1.3e-54 218.4 276 60.1
Glyma.04G019000 Glycine max HOM05D006080 ORTHO05D007382 2.3e-54 217.6 275 66.2
TPR.G27762 Trifolium pratense HOM05D006080 ORTHO05D007382 3.0e-54 217.2 279 57.7
Phvul.009G021500 Phaseolus vulgaris HOM05D006080 ORTHO05D007382 1.5e-53 214.9 276 67.0
Lj6g0017816 Lotus japonicus HOM05D006080 ORTHO05D007382 1.6e-52 211.5 277 57.0
Medtr2g041700 Medicago truncatula HOM05D006080 ORTHO05D007382 1.1e-51 208.8 201 57.2
Glyma.06G019300 Glycine max HOM05D006080 ORTHO05D007382 2.2e-49 201.1 269 63.9
Duzib168G1192 Durio zibethinus HOM05D006080 ORTHO05D007382 1.9e-45 188.0 189 46.6
QL02p058222 Quercus lobata HOM05D006080 ORTHO05D007382 9.6e-45 185.7 286 59.1
Thecc.09G076600 Theobroma cacao HOM05D006080 ORTHO05D007382 2.8e-44 184.1 179 48.0
QL93p0100_0628 Quercus lobata HOM05D006080 ORTHO05D007382 6.2e-44 183.0 286 58.7
MD02G1091700 Malus domestica HOM05D006080 ORTHO05D007382 2.4e-43 181.0 318 54.4
Gohir.A13G190700 Gossypium hirsutum HOM05D006080 ORTHO05D007382 3.1e-43 180.6 185 47.0
Gorai.013G224200 Gossypium raimondii HOM05D006080 ORTHO05D007382 5.3e-43 179.9 185 46.5
Prupe.7G198600 Prunus persica HOM05D006080 ORTHO05D007382 5.3e-43 179.9 215 44.2
Sed0020593 Sechium edule HOM05D006080 ORTHO05D007382 9.0e-43 179.1 225 41.3
CiPaw.03G206100 Carya illinoinensis HOM05D006080 ORTHO05D007382 1.5e-42 178.3 184 49.5
Ca_14668_v3 Cicer arietinum L. HOM05D006080 ORTHO05D007382 2.0e-42 177.9 381 76.1
CSS0013189 Camellia sinensis var. sinensis HOM05D006080 ORTHO05D007382 5.8e-42 176.4 190 50.0
CSS0013911 Camellia sinensis var. sinensis HOM05D006080 ORTHO05D007382 5.8e-42 176.4 190 50.0
Gorai.009G035900 Gossypium raimondii HOM05D006080 ORTHO05D007382 2.2e-41 174.5 188 44.7
Rhsim04G0100300 Rhododendron simsii HOM05D006080 ORTHO05D007382 2.2e-41 174.5 191 49.2
Rhsim12G0001600 Rhododendron simsii HOM05D006080 ORTHO05D007382 2.2e-41 174.5 192 49.5
MD15G1217800 Malus domestica HOM05D006080 ORTHO05D007382 2.9e-41 174.1 178 47.8
Ca_02204_v3 Cicer arietinum L. HOM05D006080 ORTHO05D007382 4.9e-41 173.3 234 64.5
Dinv24252 Davidia involucrata HOM05D006080 ORTHO05D007382 4.9e-41 173.3 190 48.9
COL.COLO4_18095 Corchorus olitorius HOM05D006080 ORTHO05D007382 4.2e-40 170.2 184 45.7
Duzib187G1039 Durio zibethinus HOM05D006080 ORTHO05D007382 4.2e-40 170.2 160 50.0
AUR62044025 Chenopodium quinoa HOM05D006080 ORTHO05D007382 2.1e-39 167.9 482 63.1
Sabra06G0110900 Salix brachista HOM05D006080 ORTHO05D007382 2.3e-38 164.5 184 45.1
vmacro00920 Vaccinium macrocarpon HOM05D006080 ORTHO05D007382 3.9e-38 163.7 190 47.9
Manes.09G158700 Manihot esculenta HOM05D006080 ORTHO05D007382 5.1e-38 163.3 194 44.8
FAN04G2899 Fragaria x ananassa HOM05D006080 ORTHO05D007382 6.7e-38 162.9 241 38.6
Potri.006G141800 Populus trichocarpa HOM05D006080 ORTHO05D007382 1.5e-37 161.8 177 46.3
CARHR103620 Cardamine hirsuta HOM05D006080 ORTHO05D007382 7.4e-37 159.5 196 44.9
Sc14g0000540 Simmondsia chinensis HOM05D006080 ORTHO05D007382 2.8e-36 157.5 184 45.7
Nn7g36733 Nelumbo nucifera HOM05D006080 ORTHO05D007382 8.2e-36 156.0 167 46.1
Aa31sc481G20 Aethionema arabicum HOM05D006080 ORTHO05D007382 1.1e-35 155.6 190 44.7
AL3G43560 Arabidopsis lyrata HOM05D006080 ORTHO05D007382 3.1e-35 154.1 186 46.2
AT2G06000 Arabidopsis thaliana HOM05D006080 ORTHO05D007382 3.1e-35 154.1 187 46.0
Atru.chr7.1705 Acer truncatum HOM05D006080 ORTHO05D007382 4.0e-35 153.7 168 45.8
AUR62016281 Chenopodium quinoa HOM05D006080 ORTHO05D007382 4.0e-35 153.7 464 63.4
SHI30075 Sapria himalayana HOM05D006080 ORTHO05D007382 4.0e-35 153.7 184 43.5
Sp3g24500 Schrenkiella parvula HOM05D006080 ORTHO05D007382 6.9e-35 152.9 189 43.4
HanXRQChr05g0146121 Helianthus annuus HOM05D006080 ORTHO05D007382 2.6e-34 151.0 510 53.5
CDE02G4345 Ceratophyllum demersum HOM05D006080 ORTHO05D007382 4.5e-34 150.2 187 44.4
HanXRQChr10g0292001 Helianthus annuus HOM05D006080 ORTHO05D007382 4.5e-34 150.2 513 56.3
THA.LOC104808885 Tarenaya hassleriana HOM05D006080 ORTHO05D007382 5.8e-34 149.8 209 42.1
PGR142G0728 Punica granatum HOM05D006080 ORTHO05D007382 7.6e-34 149.4 179 44.7
THA.LOC104815335 Tarenaya hassleriana HOM05D006080 ORTHO05D007382 7.6e-34 149.4 181 44.8
TWI14G1385 Tripterygium wilfordii HOM05D006080 ORTHO05D007382 1.0e-33 149.1 163 44.8
Carub.0003s2711 Capsella rubella HOM05D006080 ORTHO05D007382 1.3e-33 148.7 214 42.5
Thhalv10002477m.g Eutrema salsugineum HOM05D006080 ORTHO05D007382 2.2e-33 147.9 210 41.9
MSTRG.16549 Avicennia marina HOM05D006080 ORTHO05D007382 8.4e-33 146.0 193 46.6
Sc08g0008900 Simmondsia chinensis HOM05D006080 ORTHO05D007382 1.4e-32 145.2 183 42.6
Ciclev10007804m.g Citrus clementina HOM05D006080 ORTHO05D007382 4.2e-32 143.7 164 43.3
CSS0008787 Camellia sinensis var. sinensis HOM05D006080 ORTHO05D007382 5.5e-32 143.3 190 44.7
Hund19654 Selenicereus undatus HOM05D006080 ORTHO05D007382 5.5e-32 143.3 188 41.5
A07p06330 Brassica napus HOM05D006080 ORTHO05D007382 7.1e-32 142.9 207 41.5
BraA07t28425Z Brassica rapa HOM05D006080 ORTHO05D007382 7.1e-32 142.9 208 40.9
Lj9C313T10 Lonicera japonica HOM05D006080 ORTHO05D007382 1.2e-31 142.1 192 43.2
BcaC06g35949 Brassica carinata HOM05D006080 ORTHO05D007382 2.1e-31 141.4 210 40.5
Migut.B00654 Erythranthe guttata HOM05D006080 ORTHO05D007382 3.5e-31 140.6 192 46.4
BcaB06g26878 Brassica carinata HOM05D006080 ORTHO05D007382 6.0e-31 139.8 178 41.6
MBI19_g16224_MAGBIO Magnolia biondii HOM05D006080 ORTHO05D007382 2.3e-30 137.9 189 39.2
C07p09380 Brassica napus HOM05D006080 ORTHO05D007382 3.0e-30 137.5 210 40.5
BolC7t41361H Brassica oleracea HOM05D006080 ORTHO05D007382 3.0e-30 137.5 210 40.5
Ah.07g204920 Amaranthus hybridus HOM05D002607 ORTHO05D008816 5.1e-30 136.7 189 39.2
SGA_v2.0_scaffold332G48925 Striga asiatica HOM05D006080 ORTHO05D007382 8.7e-30 136.0 192 43.8
Oeu000645.1 Olea europaea HOM05D006080 ORTHO05D007382 4.3e-29 133.7 190 43.2
Cfa002986 Carpinus fangiana HOM05D006080 ORTHO05D007382 5.7e-29 133.3 122 55.7
Aqoxy5G04299 Aquilegia oxysepala HOM05D006080 ORTHO05D007382 1.3e-28 132.1 183 40.4
AUR62003304 Chenopodium quinoa HOM05D006080 ORTHO05D007382 1.3e-28 132.1 183 40.4
Haze_26015 Corylus avellana HOM05D006080 ORTHO05D007382 2.2e-28 131.3 122 54.9
DCAR_029235 Daucus carota HOM05D006080 ORTHO05D007382 2.2e-28 131.3 197 41.1
CDE06G1744 Ceratophyllum demersum HOM05D000591 ORTHO05D000579 8.2e-28 129.4 275 31.6
Actinidia00227 Actinidia chinensis HOM05D006080 ORTHO05D007382 1.1e-27 129.0 143 44.8
SalBow5G2015 Salvia bowleyana HOM05D006080 ORTHO05D007382 1.8e-27 128.3 190 41.6
SalBow5G4726 Salvia bowleyana HOM05D006080 ORTHO05D007382 1.8e-27 128.3 190 41.6
Cpa.g.sc28.32 Carica papaya HOM05D006080 ORTHO05D007382 3.1e-27 127.5 111 54.1
SalBow6G3562 Salvia bowleyana HOM05D006080 ORTHO05D007382 1.0e-25 122.5 195 41.5
SalBow6G5833 Salvia bowleyana HOM05D006080 ORTHO05D007382 1.0e-25 122.5 195 41.5
RcHm_v2.0_Chr7g0227901 Rosa chinensis HOM05D006080 ORTHO05D007382 1.1e-24 119.0 146 44.5
CAN.G1702.1 Capsicum annuum HOM05D006080 ORTHO05D007382 7.2e-24 116.3 194 36.1
Lsat_1_v5_gn_2_12120 Lactuca sativa HOM05D006080 ORTHO05D007382 1.2e-23 115.5 170 37.1
Sopen01g047140 Solanum pennellii HOM05D006080 ORTHO05D007382 3.6e-23 114.0 193 36.3
Solyc01g104630.3 Solanum lycopersicum HOM05D006080 ORTHO05D007382 4.6e-23 113.6 193 36.3
PGSC0003DMG401029758 Solanum tuberosum HOM05D006080 ORTHO05D007382 4.6e-23 113.6 193 36.3
FAN08G1188 Fragaria x ananassa HOM05D006080 ORTHO05D007382 7.9e-23 112.8 151 41.1
Nitab4.5_0000249g0340 Nicotiana tabacum HOM05D006080 ORTHO05D007382 3.0e-22 110.9 194 34.5
CANSAT56G0731 Cannabis sativa HOM05D006080 ORTHO05D007382 5.1e-22 110.2 112 47.3
FvH4_5g31880 Fragaria vesca HOM05D006080 ORTHO05D007382 5.1e-22 110.2 148 40.5
TWI59G0376 Tripterygium wilfordii HOM05D006080 ORTHO05D007382 6.7e-22 109.8 149 43.0
Cc02_g22120 Coffea canephora HOM05D006080 ORTHO05D007382 3.3e-21 107.5 170 37.6
CsaV3_2G001150 Cucumis sativus L. HOM05D006080 ORTHO05D007382 3.3e-21 107.5 156 41.0
FAN18G2998 Fragaria x ananassa HOM05D006080 ORTHO05D007382 5.7e-21 106.7 148 39.9
Nitab4.5_0009570g0010 Nicotiana tabacum HOM05D006080 ORTHO05D007382 7.4e-21 106.3 194 34.5
Gohir.D13G196370 Gossypium hirsutum HOM05D006080 ORTHO05D007382 1.7e-20 105.1 105 45.7
TAR383G0956 Trochodendron aralioides HOM05D006080 ORTHO05D007382 1.1e-19 102.4 150 38.7
EL10Ac6g14755 Beta vulgaris HOM05D000249 ORTHO05D000206 1.8e-19 101.7 75 68.0
Atru.BG.18.p Acer truncatum HOM05D006080 ORTHO05D007382 2.4e-19 101.3 91 54.9
MELO3C004654.2 Cucumis melo HOM05D006080 ORTHO05D007382 3.1e-19 100.9 153 39.9
Eucgr.C00814 Eucalyptus grandis HOM05D006080 ORTHO05D007382 3.1e-19 100.9 203 59.1
Psat7g154760 Pisum sativum HOM05D006080 ORTHO05D007382 5.3e-19 100.1 65 73.8
ClCG11G001430 Citrullus lanatus HOM05D006080 ORTHO05D007382 6.9e-19 99.8 149 38.9
ECA238G3807 Erigeron canadensis HOM05D006080 ORTHO05D007382 6.5e-17 93.2 146 39.0
ATR0598G196 Amborella trichopoda HOM05D006080 ORTHO05D007382 2.1e-15 88.2 184 32.6
Peaxi162Scf01290g00029 Petunia axillaris HOM05D006080 ORTHO05D007382 5.9e-10 70.1 111 36.0
Lj7A578T58 Lonicera japonica HOM05D005973 ORTHO05D007285 1.7e-09 68.6 202 25.2
CiPaw.04G079400 Carya illinoinensis HOM05D005973 ORTHO05D007285 3.8e-09 67.4 157 27.4
VMungo1215G0866 Vigna mungo HOM05D000015 ORTHO05D007382 3.8e-09 67.4 124 39.5
Lj3g0002161 Lotus japonicus HOM05D005973 ORTHO05D007285 8.5e-09 66.2 158 27.2
Atru.BG.296.p Acer truncatum HOM05D005973 ORTHO05D007285 1.1e-08 65.9 157 28.0
Psat3g158640 Pisum sativum HOM05D000104 ORTHO05D009920 1.1e-08 65.9 168 26.8
Nn5g27627 Nelumbo nucifera HOM05D007128 ORTHO05D009059 1.9e-08 65.1 163 27.6
Peaxi162Scf00087g00126 Petunia axillaris HOM05D005973 ORTHO05D007285 1.9e-08 65.1 158 27.2
Medtr7g044790 Medicago truncatula HOM05D000104 ORTHO05D009920 3.2e-08 64.3 168 26.8
vmacro19755 Vaccinium macrocarpon HOM05D005973 ORTHO05D007285 3.2e-08 64.3 203 25.1
Psat7g241480 Pisum sativum HOM05D005973 ORTHO05D007285 7.2e-08 63.2 158 27.2
Atru.chr3.1624 Acer truncatum HOM05D007128 ORTHO05D009059 9.4e-08 62.8 184 26.1
arahy.Tifrunner.gnm1.ann1.UTK222 Arachis hypogaea HOM05D000104 ORTHO05D009920 1.6e-07 62.0 163 25.2
ATR0820G217 Amborella trichopoda HOM05D005973 ORTHO05D007285 2.1e-07 61.6 154 29.2
arahy.Tifrunner.gnm1.ann1.JWX42Q Arachis hypogaea HOM05D000104 ORTHO05D009920 2.7e-07 61.2 163 25.2
Medtr3g023180 Medicago truncatula HOM05D005973 ORTHO05D007285 2.7e-07 61.2 157 26.8
TAR633G0543 Trochodendron aralioides HOM05D007128 ORTHO05D009059 2.7e-07 61.2 163 25.8
arahy.Tifrunner.gnm1.ann1.H4NKJU Arachis hypogaea HOM05D000104 ORTHO05D009920 3.6e-07 60.8 163 25.2
ATR0697G176 Amborella trichopoda HOM05D000104 ORTHO05D026583 4.7e-07 60.5 173 23.7
Cpa.g.sc71.41 Carica papaya HOM05D007128 ORTHO05D009059 4.7e-07 60.5 163 27.0
ClCG08G004220 Citrullus lanatus HOM05D007128 ORTHO05D009059 4.7e-07 60.5 183 24.0
Sabra03G0150000 Salix brachista HOM05D005973 ORTHO05D007285 6.1e-07 60.1 149 26.8
Hund13321 Selenicereus undatus HOM05D005973 ORTHO05D007285 6.1e-07 60.1 204 23.5
Haze_00709 Corylus avellana HOM05D007128 ORTHO05D009059 8.0e-07 59.7 164 26.8
SHI03956 Sapria himalayana HOM05D005973 ORTHO05D007285 8.0e-07 59.7 157 26.8
VMungo1309G1576 Vigna mungo HOM05D000104 ORTHO05D009920 8.0e-07 59.7 213 23.9
arahy.Tifrunner.gnm1.ann1.W2W9XI Arachis hypogaea HOM05D000104 ORTHO05D009920 1.0e-06 59.3 163 25.2
CAN.G1228.5 Capsicum annuum HOM05D005362 ORTHO05D006895 1.0e-06 59.3 93 39.8
Cfa015785 Carpinus fangiana HOM05D007128 ORTHO05D009059 1.0e-06 59.3 163 25.8
CDE09G0095 Ceratophyllum demersum HOM05D006232 ORTHO05D007746 1.0e-06 59.3 165 25.5
MD04G1034700 Malus domestica HOM05D007128 ORTHO05D009059 1.0e-06 59.3 170 25.9
Eucgr.D00277 Eucalyptus grandis HOM05D000104 ORTHO05D009920 1.4e-06 58.9 183 24.0
Gohir.A05G033900 Gossypium hirsutum HOM05D006080 ORTHO05D007382 1.4e-06 58.9 64 40.6
QL10p046158 Quercus lobata HOM05D007128 ORTHO05D009059 1.4e-06 58.9 165 24.8
Sp1g05440 Schrenkiella parvula HOM05D007128 ORTHO05D009059 1.4e-06 58.9 163 25.2
PGSC0003DMG400016718 Solanum tuberosum HOM05D007128 ORTHO05D009059 1.4e-06 58.9 173 22.0
TAR623G1644 Trochodendron aralioides HOM05D005973 ORTHO05D007285 1.4e-06 58.9 202 24.8
Zm00001eb423410 Zea mays HOM05D006080 ORTHO05D007382 1.4e-06 58.9 91 31.9
AUR62037245 Chenopodium quinoa HOM05D005973 ORTHO05D007285 1.8e-06 58.5 157 22.9
Glyma.20G097200 Glycine max HOM05D005973 ORTHO05D007285 1.8e-06 58.5 158 25.9
Peaxi162Scf00201g00422 Petunia axillaris HOM05D005362 ORTHO05D006895 1.8e-06 58.5 93 39.8
Cc09_g07760 Coffea canephora HOM05D005973 ORTHO05D007285 2.3e-06 58.2 202 25.2
Nitab4.5_0003441g0070 Nicotiana tabacum HOM05D005362 ORTHO05D006895 2.3e-06 58.2 93 39.8
Sopen02g025900 Solanum pennellii HOM05D007128 ORTHO05D009059 2.3e-06 58.2 173 22.5
PGSC0003DMG400024629 Solanum tuberosum HOM05D005362 ORTHO05D006895 2.3e-06 58.2 93 39.8
CANSAT78G2527 Cannabis sativa HOM05D007128 ORTHO05D009059 3.0e-06 57.8 225 24.4
Solyc02g081250.3 Solanum lycopersicum HOM05D000189 ORTHO05D009059 3.0e-06 57.8 173 22.5
Glyma.06G236700 Glycine max HOM05D005973 ORTHO05D007285 3.9e-06 57.4 158 25.9
Potri.003G203100 Populus trichocarpa HOM05D005973 ORTHO05D007285 3.9e-06 57.4 148 25.7
Sc14g0005840 Simmondsia chinensis HOM05D005973 ORTHO05D007285 3.9e-06 57.4 157 25.5
Solyc03g114920.1 Solanum lycopersicum HOM05D005362 ORTHO05D006895 3.9e-06 57.4 91 37.4
TWI38G2031 Tripterygium wilfordii HOM05D007128 ORTHO05D009059 3.9e-06 57.4 164 26.2
CSS0046383 Camellia sinensis var. sinensis HOM05D007128 ORTHO05D009059 5.2e-06 57.0 163 25.2
AUR62026807 Chenopodium quinoa HOM05D005973 ORTHO05D007285 5.2e-06 57.0 157 22.9
MELO3C005140.2 Cucumis melo HOM05D005973 ORTHO05D007285 5.2e-06 57.0 157 27.4
Gohir.D05G035300 Gossypium hirsutum HOM05D006080 ORTHO05D007382 5.2e-06 57.0 64 39.1
THA.LOC104826248 Tarenaya hassleriana HOM05D007128 ORTHO05D009059 5.2e-06 57.0 163 23.3
CSS0003119 Camellia sinensis var. sinensis HOM05D007128 ORTHO05D009059 6.7e-06 56.6 163 25.2
COL.COLO4_05553 Corchorus olitorius HOM05D004265 ORTHO05D005175 6.7e-06 56.6 159 24.5
Nitab4.5_0000316g0260 Nicotiana tabacum HOM05D005973 ORTHO05D007285 6.7e-06 56.6 155 24.5
Nitab4.5_0000939g0040 Nicotiana tabacum HOM05D005362 ORTHO05D006895 6.7e-06 56.6 93 38.7
EL10Ac2g02881 Beta vulgaris HOM05D005973 ORTHO05D007285 8.8e-06 56.2 157 23.6
Ciclev10018682m.g Citrus clementina HOM05D007128 ORTHO05D009059 8.8e-06 56.2 184 25.0
Hma1.2p1_3105F.1_g332750 Hydrangea macrophylla HOM05D006080 ORTHO05D007382 8.8e-06 56.2 60 50.0
SEGI_12554 Sequoiadendron giganteum HOM05D006080 ORTHO05D007382 8.8e-06 56.2 66 42.4


User provided reference genes

Program Settings