Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.011G171322 Phaseolus vulgaris HOM05D000157 ORTHO05D011823 6.8e-39 163.7 93 100.0
Phvul.011G171300 Phaseolus vulgaris HOM05D000157 ORTHO05D011823 9.5e-25 116.7 67 83.6
Phvul.011G171800 Phaseolus vulgaris HOM05D000157 ORTHO05D011823 1.1e-23 113.2 77 72.7
Phvul.011G171700 Phaseolus vulgaris HOM05D000157 ORTHO05D011823 1.4e-23 112.8 75 74.7
Phvul.011G168900 Phaseolus vulgaris HOM05D000157 ORTHO05D011823 3.1e-23 111.7 73 72.6
Phvul.011G170600 Phaseolus vulgaris HOM05D000157 ORTHO05D011823 4.0e-23 111.3 78 74.4
Phvul.011G171522 Phaseolus vulgaris HOM05D000157 ORTHO05D011823 4.0e-23 111.3 78 74.4
Phvul.011G170400 Phaseolus vulgaris HOM05D000157 ORTHO05D011823 6.8e-23 110.5 78 73.1
Phvul.011G171100 Phaseolus vulgaris HOM05D000157 ORTHO05D011823 6.8e-23 110.5 78 74.4
Phvul.011G169222 Phaseolus vulgaris HOM05D000157 ORTHO05D011823 2.9e-21 105.1 77 67.5
Phvul.011G171000 Phaseolus vulgaris HOM05D000157 ORTHO05D011823 4.9e-21 104.4 78 71.8
Phvul.011G170500 Phaseolus vulgaris HOM05D000157 ORTHO05D011823 6.0e-19 97.4 75 65.3
Phvul.011G170800 Phaseolus vulgaris HOM05D001172 ORTHO05D011823 5.1e-18 94.4 79 67.1
Phvul.011G170700 Phaseolus vulgaris HOM05D000157 ORTHO05D011823 9.6e-17 90.1 66 69.7
Phvul.011G087200 Phaseolus vulgaris HOM05D000157 ORTHO05D011823 9.3e-12 73.6 68 54.4
VMungo1127G2212 Vigna mungo HOM05D000157 ORTHO05D011823 1.2e-11 73.2 68 52.9
Phvul.011G115800 Phaseolus vulgaris HOM05D000157 ORTHO05D011823 2.7e-11 72.0 74 50.0
Phvul.011G129900 Phaseolus vulgaris HOM05D000157 ORTHO05D011823 1.0e-10 70.1 73 52.1
arahy.Tifrunner.gnm1.ann1.CF6KXU Arachis hypogaea HOM05D000157 ORTHO05D000311 8.7e-10 67.0 55 56.4
arahy.Tifrunner.gnm1.ann1.DI0R83 Arachis hypogaea HOM05D000157 ORTHO05D000311 8.7e-10 67.0 55 56.4
Lalb_Chr19g0136851 Lupinus albus HOM05D000157 ORTHO05D011823 1.1e-09 66.6 58 51.7
Phvul.011G115900 Phaseolus vulgaris HOM05D000157 ORTHO05D011823 3.3e-09 65.1 73 46.6
Glyma.12G082550 Glycine max HOM05D000157 ORTHO05D011823 9.6e-09 63.5 59 50.8
PGR004G2553 Punica granatum HOM05D000086 ORTHO05D009581 2.1e-08 62.4 65 43.1
PGR004G2184 Punica granatum HOM05D000086 ORTHO05D009581 2.8e-08 62.0 61 45.9
Phvul.008G099300 Phaseolus vulgaris HOM05D000086 ORTHO05D009581 3.6e-08 61.6 47 53.2
unitig_27.g25114 Utricularia gibba HOM05D000086 ORTHO05D000311 6.2e-08 60.8 44 54.5
MSTRG.18709 Avicennia marina HOM05D000157 ORTHO05D000311 8.1e-08 60.5 61 44.3
Thhalv10017824m.g Eutrema salsugineum HOM05D000157 ORTHO05D000295 1.1e-07 60.1 66 37.9
SGA_v2.0_scaffold50G18561 Striga asiatica HOM05D000157 ORTHO05D000691 1.4e-07 59.7 60 48.3
vmacro03247 Vaccinium macrocarpon HOM05D000437 ORTHO05D000324 1.4e-07 59.7 43 53.5
BraA07t29561Z Brassica rapa HOM05D000157 ORTHO05D000311 1.8e-07 59.3 45 48.9
Sc18g0002410 Simmondsia chinensis HOM05D000086 ORTHO05D000431 1.8e-07 59.3 44 54.5
Lj1g0001056 Lotus japonicus HOM05D000086 ORTHO05D009581 2.4e-07 58.9 48 52.1
AT2G27940 Arabidopsis thaliana HOM05D000157 ORTHO05D000311 3.1e-07 58.5 66 37.9
A02p18490 Brassica napus HOM05D000086 ORTHO05D000311 3.1e-07 58.5 43 53.5
BraA02t06888Z Brassica rapa HOM05D000086 ORTHO05D000311 3.1e-07 58.5 43 53.5
CDE09G0987 Ceratophyllum demersum HOM05D000257 ORTHO05D008920 3.1e-07 58.5 63 42.9
Lj3g0014526 Lotus japonicus HOM05D000086 ORTHO05D000311 4.0e-07 58.2 46 52.2
Pp3c21_17280 Physcomitrium patens HOM05D000440 ORTHO05D000295 4.0e-07 58.2 43 53.5
A07p18450 Brassica napus HOM05D000157 ORTHO05D000311 5.3e-07 57.8 45 46.7
Lalb_Chr01g0022491 Lupinus albus HOM05D000086 ORTHO05D009581 5.3e-07 57.8 49 49.0
Oeu007303.1 Olea europaea HOM05D000157 ORTHO05D000311 5.3e-07 57.8 78 37.2
Phvul.011G087400 Phaseolus vulgaris HOM05D000074 ORTHO05D011823 5.3e-07 57.8 43 53.5
Sp4g10760 Schrenkiella parvula HOM05D000157 ORTHO05D000311 5.3e-07 57.8 67 41.8
ATR0602G197 Amborella trichopoda HOM05D000157 ORTHO05D000311 6.9e-07 57.4 44 47.7
AL4G22280 Arabidopsis lyrata HOM05D000157 ORTHO05D000311 6.9e-07 57.4 43 48.8
Glyma.18G176200 Glycine max HOM05D000086 ORTHO05D009581 6.9e-07 57.4 47 51.1
Sp1g39290 Schrenkiella parvula HOM05D000086 ORTHO05D000311 6.9e-07 57.4 43 51.2
Ah.09g231320 Amaranthus hybridus HOM05D000086 ORTHO05D000431 9.0e-07 57.0 43 48.8
Cfa010134 Carpinus fangiana HOM05D000157 ORTHO05D000311 9.0e-07 57.0 64 45.3
Glyma.11G191800 Glycine max HOM05D000157 ORTHO05D011823 9.0e-07 57.0 58 46.6
Glyma.13G292600 Glycine max HOM05D000157 ORTHO05D000311 9.0e-07 57.0 43 51.2
Os04g0450300 Oryza sativa ssp. japonica HOM05D000157 ORTHO05D000691 9.0e-07 57.0 49 42.9
Manes.04G012100 Manihot esculenta HOM05D000157 ORTHO05D000311 1.2e-06 56.6 65 44.6
Solyc02g038805.1 Solanum lycopersicum HOM05D000440 ORTHO05D000295 1.2e-06 56.6 53 41.5
CiPaw.09G190900 Carya illinoinensis HOM05D000086 ORTHO05D009581 1.5e-06 56.2 49 49.0
AUR62000878 Chenopodium quinoa HOM05D000157 ORTHO05D000747 1.5e-06 56.2 47 46.8
Lalb_Chr03g0042071 Lupinus albus HOM05D000086 ORTHO05D009581 1.5e-06 56.2 44 50.0
Nitab4.5_0000073g0070 Nicotiana tabacum HOM05D000086 ORTHO05D000431 1.5e-06 56.2 43 51.2
Psat3g142520 Pisum sativum HOM05D000086 ORTHO05D009581 1.5e-06 56.2 48 47.9
BolC2t09112H Brassica oleracea HOM05D000157 ORTHO05D000311 2.0e-06 55.8 43 51.2
CANSAT64G1646 Cannabis sativa HOM05D000157 ORTHO05D000295 2.0e-06 55.8 43 51.2
Medtr4g056590 Medicago truncatula HOM05D000086 ORTHO05D000311 2.0e-06 55.8 43 53.5
Sabra11G0043000 Salix brachista HOM05D000157 ORTHO05D000311 2.0e-06 55.8 47 46.8
Sabra11G0045000 Salix brachista HOM05D000157 ORTHO05D000311 2.0e-06 55.8 47 46.8
VMungo1383G0590 Vigna mungo HOM05D000086 ORTHO05D009581 2.0e-06 55.8 47 51.1
CANSAT35G0722 Cannabis sativa HOM05D000086 ORTHO05D009581 2.6e-06 55.5 43 51.2
Glyma.12G208600 Glycine max HOM05D000157 ORTHO05D000311 2.6e-06 55.5 43 48.8
Gohir.D04G120500 Gossypium hirsutum HOM05D000086 ORTHO05D009581 2.6e-06 55.5 47 48.9
MBI07_g17040_MAGBIO Magnolia biondii HOM05D000157 ORTHO05D000311 2.6e-06 55.5 43 48.8
Os02g0832150 Oryza sativa ssp. japonica HOM05D000440 ORTHO05D000295 2.6e-06 55.5 43 51.2
Potri.001G212101 Populus trichocarpa HOM05D000157 ORTHO05D000311 2.6e-06 55.5 43 55.8
Zm00001eb383470 Zea mays HOM05D000157 ORTHO05D000431 2.6e-06 55.5 69 36.2
Aa31LG5G23040 Aethionema arabicum HOM05D000086 ORTHO05D009581 3.4e-06 55.1 47 44.7
BcaB01g03770 Brassica carinata HOM05D000086 ORTHO05D009581 3.4e-06 55.1 47 42.6
C02p30620 Brassica napus HOM05D000157 ORTHO05D000311 3.4e-06 55.1 43 51.2
CARHR137400 Cardamine hirsuta HOM05D000157 ORTHO05D000311 3.4e-06 55.1 61 42.6
Gohir.D10G030700 Gossypium hirsutum HOM05D000086 ORTHO05D000311 3.4e-06 55.1 43 48.8
Gorai.011G032600 Gossypium raimondii HOM05D000086 ORTHO05D000311 3.4e-06 55.1 43 48.8
Lj1P690T11 Lonicera japonica HOM05D000157 ORTHO05D000311 3.4e-06 55.1 43 51.2
Oeu019897.1 Olea europaea HOM05D000440 ORTHO05D000295 3.4e-06 55.1 47 42.6
Phvul.005G097500 Phaseolus vulgaris HOM05D000157 ORTHO05D000311 3.4e-06 55.1 43 48.8
RcHm_v2.0_Chr2g0096911 Rosa chinensis HOM05D000440 ORTHO05D000295 3.4e-06 55.1 43 46.5
Solyc07g053420.4 Solanum lycopersicum HOM05D000157 ORTHO05D000311 3.4e-06 55.1 43 48.8
Sopen07g027380 Solanum pennellii HOM05D000157 ORTHO05D000311 3.4e-06 55.1 43 48.8
THA.LOC104816070 Tarenaya hassleriana HOM05D000157 ORTHO05D000311 3.4e-06 55.1 47 40.4
VMungo1215G0494 Vigna mungo HOM05D000086 ORTHO05D000431 3.4e-06 55.1 43 51.2
Actinidia07193 Actinidia chinensis HOM05D000086 ORTHO05D000311 4.4e-06 54.7 64 42.2
CiPaw.09G031400 Carya illinoinensis HOM05D000086 ORTHO05D009581 4.4e-06 54.7 49 46.9
CDE02G4336 Ceratophyllum demersum HOM05D000257 ORTHO05D008920 4.4e-06 54.7 43 48.8
CsaV3_5G001360 Cucumis sativus L. HOM05D000440 ORTHO05D000295 4.4e-06 54.7 73 37.0
Duzib093G1700 Durio zibethinus HOM05D000086 ORTHO05D009581 4.4e-06 54.7 43 51.2
Migut.D02303 Erythranthe guttata HOM05D000086 ORTHO05D000311 4.4e-06 54.7 62 40.3
Gohir.A04G082000 Gossypium hirsutum HOM05D000086 ORTHO05D009581 4.4e-06 54.7 47 48.9
Gorai.012G103200 Gossypium raimondii HOM05D000086 ORTHO05D009581 4.4e-06 54.7 47 48.9
Hma1.2p1_0291F.1_g115190 Hydrangea macrophylla HOM05D000086 ORTHO05D000431 4.4e-06 54.7 45 44.4
Lsat_1_v5_gn_4_139200 Lactuca sativa HOM05D000157 ORTHO05D000691 4.4e-06 54.7 43 48.8
Oeu056661.1 Olea europaea HOM05D000157 ORTHO05D000311 4.4e-06 54.7 47 42.6
Phvul.011G087300 Phaseolus vulgaris HOM05D000074 ORTHO05D011823 4.4e-06 54.7 68 41.2
Psat7g235280 Pisum sativum HOM05D000086 ORTHO05D009581 4.4e-06 54.7 49 46.9
SMO270G0110 Selaginella moellendorffii HOM05D000157 ORTHO05D000691 4.4e-06 54.7 43 51.2
PGSC0003DMG400000271 Solanum tuberosum HOM05D000086 ORTHO05D000311 4.4e-06 54.7 43 51.2
Thecc.05G041600 Theobroma cacao HOM05D000086 ORTHO05D009581 4.4e-06 54.7 43 51.2
AagrBONN_evm.TU.Sc2ySwM_228.844 Anthoceros agrestis HOM05D000086 ORTHO05D000311 5.8e-06 54.3 53 41.5
Aqoxy7G04109 Aquilegia oxysepala HOM05D000086 ORTHO05D000431 5.8e-06 54.3 43 48.8
arahy.Tifrunner.gnm1.ann1.G42IJU Arachis hypogaea HOM05D000157 ORTHO05D000691 5.8e-06 54.3 54 40.7
C03p90860 Brassica napus HOM05D000157 ORTHO05D000311 5.8e-06 54.3 43 48.8
CANSAT56G0470 Cannabis sativa HOM05D000086 ORTHO05D000431 5.8e-06 54.3 43 48.8
CANSAT56G1093 Cannabis sativa HOM05D000086 ORTHO05D000431 5.8e-06 54.3 43 48.8
CARHR120650 Cardamine hirsuta HOM05D000157 ORTHO05D000311 5.8e-06 54.3 66 37.9
Cpa.g.sc260.1 Carica papaya HOM05D000086 ORTHO05D009581 5.8e-06 54.3 49 46.9
COL.COLO4_14826 Corchorus olitorius HOM05D000086 ORTHO05D009581 5.8e-06 54.3 43 51.2
MELO3C005811.2 Cucumis melo HOM05D000440 ORTHO05D000295 5.8e-06 54.3 73 37.0
Dinv12571 Davidia involucrata HOM05D000157 ORTHO05D000311 5.8e-06 54.3 43 46.5
ECA232G1397 Erigeron canadensis HOM05D000157 ORTHO05D000691 5.8e-06 54.3 43 48.8
Glyma.17G050900 Glycine max HOM05D000086 ORTHO05D000431 5.8e-06 54.3 43 51.2
Gohir.A10G030100 Gossypium hirsutum HOM05D000086 ORTHO05D000311 5.8e-06 54.3 43 48.8
Lalb_Chr11g0064471 Lupinus albus HOM05D000157 ORTHO05D001775 5.8e-06 54.3 43 51.2
Sed0021480 Sechium edule HOM05D000157 ORTHO05D000311 5.8e-06 54.3 66 39.4
TWI53G0434 Tripterygium wilfordii HOM05D000086 ORTHO05D009581 5.8e-06 54.3 44 47.7
MSTRG.24509 Avicennia marina HOM05D000440 ORTHO05D000295 7.6e-06 53.9 45 48.9
BcaB04g17142 Brassica carinata HOM05D000157 ORTHO05D000311 7.6e-06 53.9 43 48.8
BcaC02g12480 Brassica carinata HOM05D000157 ORTHO05D000311 7.6e-06 53.9 46 45.7
A03p20730 Brassica napus HOM05D000086 ORTHO05D009581 7.6e-06 53.9 47 42.6
C04p03520 Brassica napus HOM05D000157 ORTHO05D000311 7.6e-06 53.9 46 45.7
BolC3t21406H Brassica oleracea HOM05D000157 ORTHO05D000311 7.6e-06 53.9 43 48.8
BolC4t21986H Brassica oleracea HOM05D000157 ORTHO05D000311 7.6e-06 53.9 46 45.7
BraA03t11314Z Brassica rapa HOM05D000086 ORTHO05D009581 7.6e-06 53.9 47 42.6
CiPaw.04G145700 Carya illinoinensis HOM05D000086 ORTHO05D000431 7.6e-06 53.9 43 48.8
CDE08G1589 Ceratophyllum demersum HOM05D001163 ORTHO05D001769 7.6e-06 53.9 43 46.5
Medtr7g059360 Medicago truncatula HOM05D000086 ORTHO05D009581 7.6e-06 53.9 48 45.8
Oeu031683.1 Olea europaea HOM05D000086 ORTHO05D008998 7.6e-06 53.9 43 46.5
Os01g0311400 Oryza sativa ssp. japonica HOM05D000086 ORTHO05D000295 7.6e-06 53.9 64 39.1
Os02g0572200 Oryza sativa ssp. japonica HOM05D000157 ORTHO05D000691 7.6e-06 53.9 43 46.5
Os06g0537300 Oryza sativa ssp. japonica HOM05D000157 ORTHO05D000311 7.6e-06 53.9 69 37.7
Rhsim05G0012500 Rhododendron simsii HOM05D000086 ORTHO05D000431 7.6e-06 53.9 43 51.2
Sabra03G0135300 Salix brachista HOM05D000086 ORTHO05D009581 7.6e-06 53.9 72 38.9
Sabra06G0114200 Salix brachista HOM05D000086 ORTHO05D000431 7.6e-06 53.9 43 48.8
Sp4g24510 Schrenkiella parvula HOM05D000157 ORTHO05D000311 7.6e-06 53.9 87 36.8
Sed0001646 Sechium edule HOM05D000086 ORTHO05D009581 7.6e-06 53.9 47 46.8
Sopen02g012490 Solanum pennellii HOM05D000440 ORTHO05D000295 7.6e-06 53.9 53 41.5
TPR.G20830 Trifolium pratense HOM05D000086 ORTHO05D009581 7.6e-06 53.9 49 42.9
vmacro21930 Vaccinium macrocarpon HOM05D000157 ORTHO05D000691 7.6e-06 53.9 80 36.2
Ah.05g169580 Amaranthus hybridus HOM05D000086 ORTHO05D000431 9.9e-06 53.5 43 44.2
AagrBONN_evm.TU.Sc2ySwM_344.3492 Anthoceros agrestis HOM05D000086 ORTHO05D000295 9.9e-06 53.5 45 42.2
Aqoxy1G02195 Aquilegia oxysepala HOM05D000157 ORTHO05D000311 9.9e-06 53.5 43 48.8
Aqoxy7G03919 Aquilegia oxysepala HOM05D000157 ORTHO05D001775 9.9e-06 53.5 43 46.5
AL1G61350 Arabidopsis lyrata HOM05D000440 ORTHO05D001065 9.9e-06 53.5 43 48.8
BcaB07g33366 Brassica carinata HOM05D000157 ORTHO05D001065 9.9e-06 53.5 43 46.5
CiPaw.03G184800 Carya illinoinensis HOM05D000157 ORTHO05D000311 9.9e-06 53.5 47 46.8
COL.COLO4_30773 Corchorus olitorius HOM05D000086 ORTHO05D000431 9.9e-06 53.5 48 45.8
ECA247G2021 Erigeron canadensis HOM05D000157 ORTHO05D000311 9.9e-06 53.5 43 46.5
Thhalv10017177m.g Eutrema salsugineum HOM05D000086 ORTHO05D009581 9.9e-06 53.5 47 44.7
Glyma.13G108500 Glycine max HOM05D000086 ORTHO05D000431 9.9e-06 53.5 43 51.2
Gohir.A09G157000 Gossypium hirsutum HOM05D000086 ORTHO05D009581 9.9e-06 53.5 43 51.2
Gorai.006G173800 Gossypium raimondii HOM05D000086 ORTHO05D009581 9.9e-06 53.5 43 51.2
Lsat_1_v5_gn_1_39341 Lactuca sativa HOM05D000157 ORTHO05D000311 9.9e-06 53.5 43 46.5
MD03G1226900 Malus domestica HOM05D002398 ORTHO05D001065 9.9e-06 53.5 42 52.4
Manes.11G011900 Manihot esculenta HOM05D000157 ORTHO05D000311 9.9e-06 53.5 43 48.8
PGR119G0796 Punica granatum HOM05D000157 ORTHO05D000311 9.9e-06 53.5 43 44.2
QL01p014780 Quercus lobata HOM05D000157 ORTHO05D000311 9.9e-06 53.5 43 48.8
Sp4g19930 Schrenkiella parvula HOM05D000086 ORTHO05D009581 9.9e-06 53.5 47 44.7
Sc06g0003420 Simmondsia chinensis HOM05D000157 ORTHO05D000747 9.9e-06 53.5 45 42.2
THA.LOC104813071 Tarenaya hassleriana HOM05D000440 ORTHO05D000295 9.9e-06 53.5 76 38.2
TPR.G31698 Trifolium pratense HOM05D000086 ORTHO05D000311 9.9e-06 53.5 43 51.2


User provided reference genes

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