Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.011G168700 Phaseolus vulgaris HOM05D004700 ORTHO05D005576 9.0e-173 610.1 306 100.0
TPR.G16482 Trifolium pratense HOM05D004700 ORTHO05D005576 6.5e-155 550.8 306 89.5
Glyma.15G209600 Glycine max HOM05D004700 ORTHO05D005576 8.8e-152 540.4 306 88.9
Medtr8g054400 Medicago truncatula HOM05D004700 ORTHO05D005576 8.8e-152 540.4 299 89.3
Lalb_Chr19g0133711 Lupinus albus HOM05D004700 ORTHO05D005576 7.0e-149 530.8 312 85.3
Lj3g0009226 Lotus japonicus HOM05D004700 ORTHO05D005576 2.2e-139 499.2 304 80.9
Glyma.09G099300 Glycine max HOM05D004700 ORTHO05D005576 1.6e-137 493.0 306 82.0
VMungo1127G0687 Vigna mungo HOM05D004700 ORTHO05D005576 1.0e-136 490.3 257 97.3
Ca_22302_v3 Cicer arietinum L. HOM05D004700 ORTHO05D005576 3.4e-135 485.3 304 81.2
THA.LOC104822577 Tarenaya hassleriana HOM05D004700 ORTHO05D005576 4.5e-132 474.9 308 76.6
CANSAT56G3173 Cannabis sativa HOM05D004700 ORTHO05D005576 1.5e-127 459.9 315 75.2
Psat4g157000 Pisum sativum HOM05D004700 ORTHO05D005576 7.5e-127 457.6 306 76.5
Thhalv10011691m.g Eutrema salsugineum HOM05D004700 ORTHO05D005576 1.7e-126 456.4 309 74.4
QL08p024163 Quercus lobata HOM05D004700 ORTHO05D005576 1.7e-126 456.4 304 75.0
AL1G62040 Arabidopsis lyrata HOM05D004700 ORTHO05D005576 2.8e-126 455.7 309 74.1
AT1G53490 Arabidopsis thaliana HOM05D004700 ORTHO05D005576 6.3e-126 454.5 309 74.1
Sp1g40020 Schrenkiella parvula HOM05D004700 ORTHO05D005576 4.1e-125 451.8 309 74.1
Carub.0001s4267 Capsella rubella HOM05D004700 ORTHO05D005576 7.0e-125 451.1 309 73.1
BcaC01g01394 Brassica carinata HOM05D004700 ORTHO05D005576 2.7e-124 449.1 310 73.5
Prupe.4G156500 Prunus persica HOM05D004700 ORTHO05D005576 2.7e-124 449.1 307 74.9
Haze_09248 Corylus avellana HOM05D004700 ORTHO05D005576 5.9e-124 448.0 304 75.7
BolC3t21472H Brassica oleracea HOM05D004700 ORTHO05D005576 1.7e-123 446.4 308 73.1
Gorai.007G331800 Gossypium raimondii HOM05D004700 ORTHO05D005576 5.0e-123 444.9 308 73.1
C03p91550 Brassica napus HOM05D004700 ORTHO05D005576 1.5e-122 443.4 308 73.1
TWI38G0408 Tripterygium wilfordii HOM05D004700 ORTHO05D005576 3.3e-122 442.2 305 75.1
Gohir.D11G302900 Gossypium hirsutum HOM05D004700 ORTHO05D005576 4.3e-122 441.8 308 72.7
Migut.H02024 Erythranthe guttata HOM05D004700 ORTHO05D005576 9.5e-122 440.7 310 73.5
Manes.15G098600 Manihot esculenta HOM05D004700 ORTHO05D005576 2.1e-121 439.5 307 73.0
Gohir.A11G289500 Gossypium hirsutum HOM05D004700 ORTHO05D005576 3.6e-121 438.7 308 72.1
A05p18220 Brassica napus HOM05D004700 ORTHO05D005576 1.8e-120 436.4 307 71.3
MELO3C016116.2 Cucumis melo HOM05D004700 ORTHO05D005576 9.8e-119 430.6 305 71.5
TWI38G0400 Tripterygium wilfordii HOM05D004700 ORTHO05D005576 2.9e-118 429.1 308 72.1
CiPaw.11G155900 Carya illinoinensis HOM05D004700 ORTHO05D005576 3.7e-118 428.7 306 72.5
CiPaw.12G110800 Carya illinoinensis HOM05D004700 ORTHO05D005576 3.7e-118 428.7 306 72.2
BcaB07g33326 Brassica carinata HOM05D004700 ORTHO05D005576 1.9e-117 426.4 308 70.5
Aa31LG10G1720 Aethionema arabicum HOM05D004700 ORTHO05D005576 5.4e-117 424.9 307 70.0
CARHR043720 Cardamine hirsuta HOM05D004700 ORTHO05D005576 7.0e-117 424.5 311 70.7
Ciclev10016084m.g Citrus clementina HOM05D004700 ORTHO05D005576 2.0e-116 422.9 304 71.7
ECA236G3615 Erigeron canadensis HOM05D004700 ORTHO05D005576 2.7e-116 422.5 341 66.0
Nn6g34422 Nelumbo nucifera HOM05D004700 ORTHO05D005576 3.5e-116 422.2 307 69.7
Hma1.2p1_0050F.1_g028780 Hydrangea macrophylla HOM05D004700 ORTHO05D005576 1.0e-115 420.6 305 71.5
Atru.chr2.1968 Acer truncatum HOM05D004700 ORTHO05D005576 1.3e-115 420.2 307 71.7
Potri.011G104500 Populus trichocarpa HOM05D004700 ORTHO05D005576 3.0e-115 419.1 307 69.4
Atru.chr2.1937 Acer truncatum HOM05D004700 ORTHO05D005576 3.9e-115 418.7 307 71.3
CsaV3_4G008200 Cucumis sativus L. HOM05D004700 ORTHO05D005576 3.9e-115 418.7 307 70.4
GSVIVG01014096001 Vitis vinifera HOM05D004700 ORTHO05D005576 8.6e-115 417.5 305 71.8
vmacro11972 Vaccinium macrocarpon HOM05D004700 ORTHO05D005576 1.5e-114 416.8 308 71.1
Actinidia03618 Actinidia chinensis HOM05D004700 ORTHO05D005576 1.9e-114 416.4 309 71.2
Sabra11G0081100 Salix brachista HOM05D004700 ORTHO05D005576 2.8e-113 412.5 305 69.2
Cc05_g10710 Coffea canephora HOM05D004700 ORTHO05D005576 6.2e-113 411.4 308 69.2
Actinidia12604 Actinidia chinensis HOM05D004700 ORTHO05D005576 8.0e-113 411.0 320 67.5
Oeu050672.1 Olea europaea HOM05D004700 ORTHO05D005576 8.0e-113 411.0 306 67.0
CSS0040857 Camellia sinensis var. sinensis HOM05D004700 ORTHO05D005576 1.8e-112 409.8 304 69.4
Actinidia39420 Actinidia chinensis HOM05D004700 ORTHO05D005576 3.4e-111 405.6 312 68.9
Zm00001eb239370 Zea mays HOM05D004700 ORTHO05D005576 1.7e-110 403.3 308 67.9
MD03G1247600 Malus domestica HOM05D004700 ORTHO05D005576 2.2e-110 402.9 308 67.9
Thecc.07G132900 Theobroma cacao HOM05D004700 ORTHO05D005576 3.7e-110 402.1 305 68.9
Sed0011117 Sechium edule HOM05D004700 ORTHO05D005576 4.9e-110 401.7 307 67.4
Eucgr.F03234 Eucalyptus grandis HOM05D004700 ORTHO05D005576 2.4e-109 399.4 304 67.1
Hma1.2p1_0325F.1_g125830 Hydrangea macrophylla HOM05D004700 ORTHO05D005576 4.1e-109 398.7 311 67.2
Lj1A824T63 Lonicera japonica HOM05D004700 ORTHO05D005576 1.2e-108 397.1 284 72.5
Manes.03G079300 Manihot esculenta HOM05D004700 ORTHO05D005576 1.6e-108 396.7 307 67.4
Os02g0232100 Oryza sativa ssp. japonica HOM05D004700 ORTHO05D005576 2.1e-108 396.4 306 68.0
EL10Ac4g08417 Beta vulgaris HOM05D004700 ORTHO05D005576 2.7e-108 396.0 307 66.4
DCAR_013348 Daucus carota HOM05D004700 ORTHO05D005576 4.6e-108 395.2 309 66.3
CAN.G68.2 Capsicum annuum HOM05D004700 ORTHO05D005576 6.0e-108 394.8 306 67.0
Duzib213G0278 Durio zibethinus HOM05D004700 ORTHO05D005576 2.3e-107 392.9 305 68.5
PGR031G0266 Punica granatum HOM05D004700 ORTHO05D005576 8.6e-107 391.0 306 67.6
arahy.Tifrunner.gnm1.ann1.7PP38G Arachis hypogaea HOM05D004700 ORTHO05D005576 1.9e-106 389.8 264 75.0
Potri.001G383900 Populus trichocarpa HOM05D004700 ORTHO05D005576 4.3e-106 388.7 313 65.8
Hund08843 Selenicereus undatus HOM05D004700 ORTHO05D005576 4.3e-106 388.7 307 66.1
arahy.Tifrunner.gnm1.ann1.DP9AR5 Arachis hypogaea HOM05D004700 ORTHO05D005576 7.3e-106 387.9 285 70.5
unitig_746.g26835 Utricularia gibba HOM05D004700 ORTHO05D005576 1.2e-105 387.1 337 62.9
HanXRQChr15g0492381 Helianthus annuus HOM05D004700 ORTHO05D005576 3.6e-105 385.6 316 63.3
ATR0602G050 Amborella trichopoda HOM05D004700 ORTHO05D005576 1.1e-104 384.0 318 62.6
BcaC08g43535 Brassica carinata HOM05D004700 ORTHO05D005576 1.4e-104 383.6 318 63.2
BraA08t32205Z Brassica rapa HOM05D004700 ORTHO05D005576 3.1e-104 382.5 306 64.7
PSO541G3766 Papaver somniferum HOM05D004700 ORTHO05D005576 3.1e-104 382.5 307 64.5
Rhsim06G0211800 Rhododendron simsii HOM05D004700 ORTHO05D005576 5.2e-104 381.7 310 67.1
Sopen08g005940 Solanum pennellii HOM05D004700 ORTHO05D005576 2.0e-103 379.8 308 65.3
A06p00990 Brassica napus HOM05D004700 ORTHO05D005576 1.4e-101 373.6 355 57.5
BraA06t23327Z Brassica rapa HOM05D004700 ORTHO05D005576 1.4e-101 373.6 355 57.5
PSO675G6346 Papaver somniferum HOM05D004700 ORTHO05D005576 1.9e-101 373.2 309 63.4
Nitab4.5_0000348g0050 Nicotiana tabacum HOM05D004700 ORTHO05D005576 2.4e-101 372.9 306 65.0
BraA08t32208Z Brassica rapa HOM05D004700 ORTHO05D005576 4.1e-101 372.1 308 64.9
SGA_v2.0_scaffold181G39765 Striga asiatica HOM05D004700 ORTHO05D005576 5.4e-101 371.7 312 63.1
BcaB02g10917 Brassica carinata HOM05D004700 ORTHO05D005576 7.8e-100 367.9 306 62.1
Nitab4.5_0000092g0360 Nicotiana tabacum HOM05D004700 ORTHO05D005576 4.3e-98 362.1 262 71.8
ClCG07G010130 Citrullus lanatus HOM05D004700 ORTHO05D005576 4.7e-97 358.6 271 69.7
FAN11G3801 Fragaria x ananassa HOM05D004700 ORTHO05D005576 6.2e-97 358.2 320 62.8
MBI06_g08516_MAGBIO Magnolia biondii HOM05D004700 ORTHO05D005576 8.1e-97 357.8 320 60.9
Sabra16G0252900 Salix brachista HOM05D004700 ORTHO05D005576 1.4e-96 357.1 338 58.3
Sc03g0010710 Simmondsia chinensis HOM05D004700 ORTHO05D005576 3.1e-96 355.9 281 66.2
FAN16G2451 Fragaria x ananassa HOM05D004700 ORTHO05D005576 4.0e-96 355.5 319 62.4
Dinv26707 Davidia involucrata HOM05D004700 ORTHO05D005576 2.9e-94 349.4 307 62.5
Solyc08g015770.4 Solanum lycopersicum HOM05D004700 ORTHO05D005576 3.8e-94 349.0 287 65.2
RcHm_v2.0_Chr5g0029521 Rosa chinensis HOM05D004700 ORTHO05D005576 4.2e-93 345.5 307 62.9
MD11G1269900 Malus domestica HOM05D004700 ORTHO05D005576 7.1e-93 344.7 324 60.8
C06p09250 Brassica napus HOM05D004700 ORTHO05D005576 7.8e-92 341.3 349 55.0
BolC6t36002H Brassica oleracea HOM05D004700 ORTHO05D005576 7.8e-92 341.3 349 55.0
TAR624G0400 Trochodendron aralioides HOM05D004700 ORTHO05D005576 5.1e-91 338.6 281 64.1
RhsimUnG0206700 Rhododendron simsii HOM05D004700 ORTHO05D005576 2.1e-89 333.2 311 60.1
FvH4_3g17740 Fragaria vesca HOM05D004700 ORTHO05D005576 3.6e-89 332.4 307 61.2
Cpa.g.sc77.62 Carica papaya HOM05D004700 ORTHO05D005576 1.8e-88 330.1 232 75.9
Peaxi162Scf00111g01325 Petunia axillaris HOM05D004700 ORTHO05D005576 2.4e-88 329.7 249 69.9
Nitab4.5_0012258g0020 Nicotiana tabacum HOM05D004700 ORTHO05D005576 6.4e-86 321.6 284 62.7
Sabra11G0076400 Salix brachista HOM05D004700 ORTHO05D005576 1.1e-85 320.9 305 58.7
BcaB04g17077 Brassica carinata HOM05D004700 ORTHO05D005576 2.1e-84 316.6 296 57.8
CSS0048020 Camellia sinensis var. sinensis HOM05D004700 ORTHO05D005576 4.6e-84 315.5 256 66.8
Cfa019516 Carpinus fangiana HOM05D004700 ORTHO05D005576 1.0e-83 314.3 241 70.5
CSS0037390 Camellia sinensis var. sinensis HOM05D004700 ORTHO05D005576 1.7e-83 313.5 256 66.4
Aqoxy1G01902 Aquilegia oxysepala HOM05D004700 ORTHO05D005576 5.1e-83 312.0 214 72.9
Sed0005766 Sechium edule HOM05D004700 ORTHO05D005576 8.1e-81 304.7 216 70.8
MSTRG.12860 Avicennia marina HOM05D004700 ORTHO05D005576 4.0e-80 302.4 236 69.1
Lsat_1_v5_gn_7_101801 Lactuca sativa HOM05D004700 ORTHO05D005576 4.0e-80 302.4 296 59.5
COL.COLO4_17473 Corchorus olitorius HOM05D004700 ORTHO05D005576 1.9e-77 293.5 232 67.2
BcaC08g44093 Brassica carinata HOM05D004700 ORTHO05D005576 3.1e-72 276.2 241 63.1
C06p14980 Brassica napus HOM05D004700 ORTHO05D005576 3.2e-69 266.2 233 62.7
BolC6t36675H Brassica oleracea HOM05D004700 ORTHO05D005576 3.2e-69 266.2 233 62.7
AUR62039578 Chenopodium quinoa HOM05D004700 ORTHO05D005576 3.2e-69 266.2 233 62.7
AUR62019650 Chenopodium quinoa HOM05D004700 ORTHO05D005576 5.5e-69 265.4 233 62.2
PGSC0003DMG400013718 Solanum tuberosum HOM05D004700 ORTHO05D005576 7.9e-68 261.5 234 62.4
Dinv13363 Davidia involucrata HOM05D004700 ORTHO05D005576 3.9e-67 259.2 189 70.9
BraA05t20718Z Brassica rapa HOM05D004700 ORTHO05D005576 1.6e-65 253.8 146 82.9
CDE06G2539 Ceratophyllum demersum HOM05D004700 ORTHO05D005576 1.4e-64 250.8 244 56.6
Sabra11G0075900 Salix brachista HOM05D004700 ORTHO05D005576 4.0e-64 249.2 214 62.6
Peaxi162Scf00000g00759 Petunia axillaris HOM05D004700 ORTHO05D005576 1.4e-61 240.7 232 60.3
Ah.04g164030 Amaranthus hybridus HOM05D004700 ORTHO05D005576 7.1e-61 238.4 231 58.0
DCAR_021040 Daucus carota HOM05D004700 ORTHO05D005576 9.3e-61 238.0 239 57.3
Ah.06g187700 Amaranthus hybridus HOM05D004700 ORTHO05D005576 3.0e-59 233.0 236 59.7
Oeu010032.1 Olea europaea HOM05D004700 ORTHO05D005576 3.3e-58 229.6 294 46.9
SEGI_00597 Sequoiadendron giganteum HOM05D004700 ORTHO05D005576 6.5e-54 215.3 245 54.7
Sabra11G0076300 Salix brachista HOM05D004700 ORTHO05D005576 9.4e-53 211.5 172 66.3
Sabra11G0075300 Salix brachista HOM05D004700 ORTHO05D005576 2.5e-50 203.4 160 68.1
Pp3c8_15890 Physcomitrium patens HOM05D004700 ORTHO05D005576 4.3e-50 202.6 316 40.8
Sc07g0002390 Simmondsia chinensis HOM05D004700 ORTHO05D005576 1.2e-47 194.5 145 69.7
FAN25G1946 Fragaria x ananassa HOM05D004700 ORTHO05D005576 7.7e-47 191.8 246 50.0
Gorai.002G047100 Gossypium raimondii HOM05D004700 ORTHO05D005576 8.5e-46 188.3 243 47.7
CDE02G3773 Ceratophyllum demersum HOM05D004700 ORTHO05D005576 7.2e-45 185.3 287 39.7
Mapoly0001s0250 Marchantia polymorpha HOM05D004700 ORTHO05D005576 1.4e-43 181.0 324 37.0
Actinidia04620 Actinidia chinensis HOM05D004700 ORTHO05D005576 1.8e-40 170.6 167 59.3
AagrBONN_evm.TU.Sc2ySwM_362.885 Anthoceros agrestis HOM05D004700 ORTHO05D005576 3.1e-40 169.9 294 39.1
Sabra11G0075500 Salix brachista HOM05D004700 ORTHO05D005576 9.1e-40 168.3 149 63.1
Actinidia04619 Actinidia chinensis HOM05D004700 ORTHO05D005576 6.7e-35 152.1 74 87.8
Zm00001eb164550 Zea mays HOM05D004700 ORTHO05D005576 1.3e-30 137.9 73 78.1
Zm00001eb364990 Zea mays HOM05D001185 ORTHO05D005576 2.9e-30 136.7 128 60.2
Ah.06g187690 Amaranthus hybridus HOM05D004700 ORTHO05D000031 7.2e-29 132.1 73 82.2
Gohir.D01G038350 Gossypium hirsutum HOM05D004700 ORTHO05D005576 2.1e-28 130.6 156 50.0
Zm00001eb337320 Zea mays HOM05D004700 ORTHO05D005576 1.8e-27 127.5 168 45.2
Cre03.g161500 Chlamydomonas reinhardtii HOM05D004700 ORTHO05D005576 3.7e-25 119.8 179 34.6
Aqoxy1G01901 Aquilegia oxysepala HOM05D004700 ORTHO05D005576 1.4e-24 117.9 90 64.4
Zm00001eb046150 Zea mays HOM05D004700 ORTHO05D005576 4.5e-23 112.8 59 78.0
Zm00001eb352830 Zea mays HOM05D004700 ORTHO05D005576 3.4e-18 96.7 50 78.0
Nitab4.5_0000244g0440 Nicotiana tabacum HOM05D000856 ORTHO05D001792 1.9e-13 80.9 83 56.6
Lsat_1_v5_gn_8_31621 Lactuca sativa HOM05D003665 ORTHO05D004387 2.1e-12 77.4 52 75.0
Sc07g0002380 Simmondsia chinensis HOM05D004700 ORTHO05D005576 2.1e-12 77.4 85 50.6
Lsat_1_v5_gn_6_80301 Lactuca sativa HOM05D003665 ORTHO05D004387 6.1e-12 75.9 64 62.5
Peaxi162Scf00000g00758 Petunia axillaris HOM05D004700 ORTHO05D005576 1.1e-08 65.1 100 38.0


User provided reference genes

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