Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.011G165600 Phaseolus vulgaris HOM05D005007 ORTHO05D006053 1.2e-52 209.5 106 100.0
VMungo1127G1862 Vigna mungo HOM05D005007 ORTHO05D006053 2.3e-35 152.1 96 82.3
Glyma.12G156400 Glycine max HOM05D005007 ORTHO05D006053 5.2e-35 151.0 105 80.0
Glyma.06G227850 Glycine max HOM05D005007 ORTHO05D006053 1.5e-34 149.4 104 77.9
Glyma.06G227900 Glycine max HOM05D005007 ORTHO05D006053 1.5e-34 149.4 104 77.9
Thecc.07G118400 Theobroma cacao HOM05D005007 ORTHO05D006053 2.4e-24 115.5 105 60.0
TWI39G0558 Tripterygium wilfordii HOM05D005007 ORTHO05D006053 3.5e-23 111.7 87 71.3
CiPaw.12G113100 Carya illinoinensis HOM05D005007 ORTHO05D006053 4.6e-23 111.3 99 59.6
COL.COLO4_17528 Corchorus olitorius HOM05D005007 ORTHO05D006053 6.0e-23 110.9 93 63.4
Lalb_Chr03g0031211 Lupinus albus HOM05D005007 ORTHO05D006053 6.0e-23 110.9 107 61.7
Manes.15G095801 Manihot esculenta HOM05D005007 ORTHO05D006053 7.8e-23 110.5 89 62.9
Cpa.g.sc77.26 Carica papaya HOM05D005007 ORTHO05D006053 1.0e-22 110.2 93 60.2
Sabra16G0257800 Salix brachista HOM05D005007 ORTHO05D006053 1.0e-22 110.2 86 65.1
QL08p025919 Quercus lobata HOM05D005007 ORTHO05D006053 1.7e-22 109.4 99 63.6
Rhsim06G0209000 Rhododendron simsii HOM05D005007 ORTHO05D006053 3.9e-22 108.2 97 55.7
CiPaw.11G159400 Carya illinoinensis HOM05D005007 ORTHO05D006053 8.6e-22 107.1 100 55.0
Potri.001G393001 Populus trichocarpa HOM05D005007 ORTHO05D006053 1.5e-21 106.3 99 59.6
Ciclev10022947m.g Citrus clementina HOM05D005007 ORTHO05D006053 5.6e-21 104.4 90 58.9
Atru.chr2.2102 Acer truncatum HOM05D005007 ORTHO05D006053 7.3e-21 104.0 96 61.5
arahy.Tifrunner.gnm1.ann1.G1B0F8 Arachis hypogaea HOM05D005007 ORTHO05D006053 3.6e-20 101.7 86 58.1
Prupe.4G161500 Prunus persica HOM05D005007 ORTHO05D006053 3.6e-20 101.7 102 54.9
Lalb_Chr01g0006861 Lupinus albus HOM05D005007 ORTHO05D006053 1.1e-19 100.1 98 61.2
Gohir.D01G042700 Gossypium hirsutum HOM05D005007 ORTHO05D006053 8.9e-19 97.1 111 56.8
Gorai.002G053600 Gossypium raimondii HOM05D005007 ORTHO05D006053 8.9e-19 97.1 111 56.8
vmacro11948 Vaccinium macrocarpon HOM05D005007 ORTHO05D006053 8.9e-19 97.1 97 55.7
Potri.011G108700 Populus trichocarpa HOM05D005007 ORTHO05D006053 1.5e-18 96.3 96 54.2
Eucgr.F01249 Eucalyptus grandis HOM05D005007 ORTHO05D006053 2.0e-18 95.9 103 53.4
Potri.001G389150 Populus trichocarpa HOM05D005007 ORTHO05D006053 2.0e-18 95.9 96 58.3
Actinidia35210 Actinidia chinensis HOM05D005007 ORTHO05D006053 2.6e-18 95.5 78 61.5
HanXRQChr02g0038411 Helianthus annuus HOM05D005007 ORTHO05D006053 7.5e-18 94.0 89 52.8
ClCG07G010220 Citrullus lanatus HOM05D005007 ORTHO05D006053 1.7e-17 92.8 107 52.3
Gohir.A01G053200 Gossypium hirsutum HOM05D005007 ORTHO05D006053 1.7e-17 92.8 111 55.0
RcHm_v2.0_Chr5g0030711 Rosa chinensis HOM05D005007 ORTHO05D006053 2.9e-17 92.0 98 55.1
CANSAT35G0905 Cannabis sativa HOM05D005007 ORTHO05D006053 6.4e-17 90.9 80 53.8
Haze_09314 Corylus avellana HOM05D005007 ORTHO05D006053 6.4e-17 90.9 73 61.6
Nn3g21105 Nelumbo nucifera HOM05D005007 ORTHO05D006053 2.4e-16 89.0 88 55.7
Peaxi162Scf00202g00119 Petunia axillaris HOM05D005007 ORTHO05D006053 2.4e-16 89.0 104 51.0
QL05p049974 Quercus lobata HOM05D005007 ORTHO05D006053 9.2e-16 87.0 83 55.4
CsaV3_4G008110 Cucumis sativus L. HOM05D005007 ORTHO05D006053 1.2e-15 86.7 93 54.8
Potri.004G061100 Populus trichocarpa HOM05D005007 ORTHO05D006053 1.2e-15 86.7 80 58.8
Sed0025620 Sechium edule HOM05D005007 ORTHO05D006053 1.2e-15 86.7 105 47.6
MBI06_g18688_MAGBIO Magnolia biondii HOM05D005007 ORTHO05D006053 1.6e-15 86.3 89 50.6
MD11G1264800 Malus domestica HOM05D005007 ORTHO05D006053 1.6e-15 86.3 91 57.1
GSVIVG01021255001 Vitis vinifera HOM05D005007 ORTHO05D006053 1.6e-15 86.3 101 51.5
Manes.16G043000 Manihot esculenta HOM05D005007 ORTHO05D006053 2.1e-15 85.9 102 48.0
Sabra04G0040400 Salix brachista HOM05D005007 ORTHO05D006053 2.7e-15 85.5 80 55.0
Dinv32340 Davidia involucrata HOM05D005007 ORTHO05D006053 3.5e-15 85.1 103 51.5
Duzib160G0236 Durio zibethinus HOM05D005007 ORTHO05D006053 3.5e-15 85.1 103 46.6
Potri.011G070400 Populus trichocarpa HOM05D005007 ORTHO05D006053 3.5e-15 85.1 70 60.0
CiPaw.09G137100 Carya illinoinensis HOM05D005007 ORTHO05D006053 4.6e-15 84.7 102 47.1
ECA236G3784 Erigeron canadensis HOM05D005007 ORTHO05D006053 4.6e-15 84.7 96 45.8
TWI09G0208 Tripterygium wilfordii HOM05D005007 ORTHO05D006053 4.6e-15 84.7 102 46.1
Dinv12754 Davidia involucrata HOM05D005007 ORTHO05D006053 6.0e-15 84.3 102 48.0
Sabra11G0096200 Salix brachista HOM05D005007 ORTHO05D006053 6.0e-15 84.3 88 56.8
Thecc.06G165800 Theobroma cacao HOM05D005007 ORTHO05D006053 6.0e-15 84.3 105 49.5
Aqoxy4G00249 Aquilegia oxysepala HOM05D005007 ORTHO05D006053 7.8e-15 84.0 79 58.2
Actinidia35601 Actinidia chinensis HOM05D005007 ORTHO05D006053 1.0e-14 83.6 100 49.0
Ciclev10017907m.g Citrus clementina HOM05D005007 ORTHO05D006053 1.7e-14 82.8 94 51.1
Gohir.D06G138700 Gossypium hirsutum HOM05D005007 ORTHO05D006053 1.7e-14 82.8 102 48.0
Lsat_1_v5_gn_5_126541 Lactuca sativa HOM05D005007 ORTHO05D006053 1.7e-14 82.8 86 53.5
COL.COLO4_31238 Corchorus olitorius HOM05D005007 ORTHO05D006053 2.3e-14 82.4 111 44.1
Gohir.A06G133600 Gossypium hirsutum HOM05D005007 ORTHO05D006053 2.3e-14 82.4 106 46.2
Gorai.010G161300 Gossypium raimondii HOM05D005007 ORTHO05D006053 2.3e-14 82.4 102 48.0
Medtr8g087320 Medicago truncatula HOM05D005007 ORTHO05D006053 2.3e-14 82.4 83 54.2
PGSC0003DMG400028468 Solanum tuberosum HOM05D005007 ORTHO05D006053 2.3e-14 82.4 86 55.8
TPR.G6805 Trifolium pratense HOM05D000213 ORTHO05D000426 2.3e-14 82.4 80 50.0
Actinidia39520 Actinidia chinensis HOM05D005007 ORTHO05D006053 5.1e-14 81.3 86 50.0
MELO3C007199.2 Cucumis melo HOM05D005007 ORTHO05D006053 5.1e-14 81.3 86 48.8
MD10G1275600 Malus domestica HOM05D005007 ORTHO05D006053 5.1e-14 81.3 88 52.3
Prupe.4G066600 Prunus persica HOM05D005007 ORTHO05D006053 5.1e-14 81.3 106 48.1
Lsat_1_v5_gn_7_25701 Lactuca sativa HOM05D005007 ORTHO05D006053 6.6e-14 80.9 79 51.9
Lalb_Chr13g0295281 Lupinus albus HOM05D005007 ORTHO05D006053 6.6e-14 80.9 90 50.0
Ca_17898_v3 Cicer arietinum L. HOM05D005007 ORTHO05D006053 8.6e-14 80.5 84 48.8
CsaV3_6G051040 Cucumis sativus L. HOM05D005007 ORTHO05D006053 1.5e-13 79.7 86 48.8
Duzib235G0435 Durio zibethinus HOM05D005007 ORTHO05D006053 1.5e-13 79.7 107 43.9
Manes.17G059100 Manihot esculenta HOM05D005007 ORTHO05D006053 1.5e-13 79.7 85 52.9
arahy.Tifrunner.gnm1.ann1.HJBU6U Arachis hypogaea HOM05D005007 ORTHO05D006053 1.9e-13 79.3 94 45.7
arahy.Tifrunner.gnm1.ann1.VZS9XU Arachis hypogaea HOM05D005007 ORTHO05D006053 1.9e-13 79.3 97 45.4
Glyma.05G160900 Glycine max HOM05D005007 ORTHO05D006053 1.9e-13 79.3 94 48.9
Sabra11G0055100 Salix brachista HOM05D005007 ORTHO05D006053 3.3e-13 78.6 76 52.6
Sc16g0007670 Simmondsia chinensis HOM05D005007 ORTHO05D006053 3.3e-13 78.6 93 47.3
CDE10G0299 Ceratophyllum demersum HOM05D005007 ORTHO05D006053 4.3e-13 78.2 78 48.7
Psat7g068680 Pisum sativum HOM05D005007 ORTHO05D006053 5.6e-13 77.8 80 48.8
Atru.chr10.1572 Acer truncatum HOM05D005007 ORTHO05D006053 7.3e-13 77.4 123 40.7
EL10Ac4g08365 Beta vulgaris HOM05D005007 ORTHO05D006053 7.3e-13 77.4 81 55.6
MD00G1009400 Malus domestica HOM05D005007 ORTHO05D006053 7.3e-13 77.4 86 51.2
MD05G1295500 Malus domestica HOM05D005007 ORTHO05D006053 7.3e-13 77.4 86 51.2
Solyc02g072170.3 Solanum lycopersicum HOM05D005007 ORTHO05D006053 7.3e-13 77.4 108 49.1
Ah.14g087010 Amaranthus hybridus HOM05D005007 ORTHO05D006053 9.5e-13 77.0 77 51.9
Phvul.002G241000 Phaseolus vulgaris HOM05D005007 ORTHO05D006053 9.5e-13 77.0 90 47.8
Migut.H01413 Erythranthe guttata HOM05D005007 ORTHO05D006053 1.6e-12 76.3 112 44.6
Hma1.2p1_0934F.1_g238510 Hydrangea macrophylla HOM05D005007 ORTHO05D006053 2.1e-12 75.9 107 44.9
SalBow7G2341 Salvia bowleyana HOM05D005007 ORTHO05D006053 2.1e-12 75.9 85 47.1
Migut.M00716 Erythranthe guttata HOM05D005007 ORTHO05D006053 2.8e-12 75.5 107 45.8
SalBow8G4395 Salvia bowleyana HOM05D005007 ORTHO05D006053 2.8e-12 75.5 81 46.9
Sopen02g021150 Solanum pennellii HOM05D005007 ORTHO05D006053 2.8e-12 75.5 108 48.1
Cpa.g.sc7.108 Carica papaya HOM05D005007 ORTHO05D006053 3.6e-12 75.1 93 44.1
AUR62039477 Chenopodium quinoa HOM05D005007 ORTHO05D006053 3.6e-12 75.1 78 50.0
Glyma.08G118300 Glycine max HOM05D005007 ORTHO05D006053 4.7e-12 74.7 76 48.7
Oeu039881.1 Olea europaea HOM05D005007 ORTHO05D006053 4.7e-12 74.7 116 42.2
RcHm_v2.0_Chr5g0011631 Rosa chinensis HOM05D005007 ORTHO05D006053 4.7e-12 74.7 87 50.6
CSS0021075 Camellia sinensis var. sinensis HOM05D005007 ORTHO05D006053 6.2e-12 74.3 81 51.9
Oeu060171.1 Olea europaea HOM05D005007 ORTHO05D006053 6.2e-12 74.3 110 43.6
Actinidia18804 Actinidia chinensis HOM05D005007 ORTHO05D006053 8.1e-12 73.9 54 66.7
Migut.H01416 Erythranthe guttata HOM05D005007 ORTHO05D006053 8.1e-12 73.9 88 51.1
DCAR_003989 Daucus carota HOM05D005007 ORTHO05D006053 1.1e-11 73.6 88 47.7
Sabra11G0058300 Salix brachista HOM05D005007 ORTHO05D006053 1.1e-11 73.6 86 48.8
Cc02_g15570 Coffea canephora HOM05D005007 ORTHO05D006053 1.4e-11 73.2 98 44.9
FvH4_3g07320 Fragaria vesca HOM05D005007 ORTHO05D006053 2.3e-11 72.4 115 45.2
FAN11G0120 Fragaria x ananassa HOM05D005007 ORTHO05D006053 2.3e-11 72.4 112 46.4
FAN21G0366 Fragaria x ananassa HOM05D005007 ORTHO05D006053 3.1e-11 72.0 87 52.9
CSS0026874 Camellia sinensis var. sinensis HOM05D005007 ORTHO05D006053 5.2e-11 71.2 80 52.5
ClCG01G023890 Citrullus lanatus HOM05D005007 ORTHO05D006053 5.2e-11 71.2 68 50.0
Sed0011988 Sechium edule HOM05D005007 ORTHO05D006053 6.8e-11 70.9 83 45.8
MSTRG.7429 Avicennia marina HOM05D005007 ORTHO05D006053 8.9e-11 70.5 102 43.1
FAN25G2704 Fragaria x ananassa HOM05D005007 ORTHO05D006053 8.9e-11 70.5 108 45.4
Haze_05357 Corylus avellana HOM05D005007 ORTHO05D006053 1.2e-10 70.1 68 45.6
Duzib192G0425 Durio zibethinus HOM05D005007 ORTHO05D006053 1.2e-10 70.1 96 40.6
Sed0017213 Sechium edule HOM05D005007 ORTHO05D006053 1.5e-10 69.7 93 41.9
Nitab4.5_0007471g0020 Nicotiana tabacum HOM05D005007 ORTHO05D006053 2.0e-10 69.3 85 51.8
FAN16G2723 Fragaria x ananassa HOM05D005007 ORTHO05D006053 2.6e-10 68.9 87 52.9
PGR042G3787 Punica granatum HOM05D005007 ORTHO05D006053 2.6e-10 68.9 60 56.7
Gohir.D05G156101 Gossypium hirsutum HOM05D005007 ORTHO05D006053 3.4e-10 68.6 66 48.5
BcaB04g18501 Brassica carinata HOM05D005007 ORTHO05D006053 4.4e-10 68.2 87 40.2
Thhalv10027446m.g Eutrema salsugineum HOM05D005007 ORTHO05D006053 4.4e-10 68.2 97 41.2
Nitab4.5_0000437g0140 Nicotiana tabacum HOM05D005007 ORTHO05D006053 7.6e-10 67.4 85 50.6
Gohir.A05G153450 Gossypium hirsutum HOM05D005007 ORTHO05D006053 9.9e-10 67.0 98 35.7
Peaxi162Scf00111g01466 Petunia axillaris HOM05D005007 ORTHO05D006053 1.7e-09 66.2 75 49.3
ATR0012G015 Amborella trichopoda HOM05D005007 ORTHO05D006053 2.9e-09 65.5 78 43.6
DCAR_007938 Daucus carota HOM05D005007 ORTHO05D006053 4.9e-09 64.7 66 56.1
Rhsim02G0146700 Rhododendron simsii HOM05D005007 ORTHO05D006053 6.4e-09 64.3 87 43.7
BraA08t33391Z Brassica rapa HOM05D005007 ORTHO05D006053 8.4e-09 63.9 70 50.0
Ah.09g233580 Amaranthus hybridus HOM05D005007 ORTHO05D006053 1.1e-08 63.5 59 49.2
Sp7g17510 Schrenkiella parvula HOM05D005007 ORTHO05D006053 1.4e-08 63.2 89 38.2
C03p81500 Brassica napus HOM05D005007 ORTHO05D006053 2.4e-08 62.4 70 48.6
BolC3t20421H Brassica oleracea HOM05D005007 ORTHO05D006053 2.4e-08 62.4 70 48.6
CARHR225660 Cardamine hirsuta HOM05D005007 ORTHO05D006053 2.4e-08 62.4 88 37.5
HPP92_008753 Vanilla planifolia HOM05D005007 ORTHO05D006053 2.4e-08 62.4 79 41.8
CDE10G1215 Ceratophyllum demersum HOM05D005007 ORTHO05D006053 3.2e-08 62.0 48 60.4
Actinidia16774 Actinidia chinensis HOM05D005007 ORTHO05D006053 7.1e-08 60.8 60 50.0
unitig_0.g744 Utricularia gibba HOM05D005007 ORTHO05D006053 2.1e-07 59.3 50 56.0
PGSC0003DMG400044408 Solanum tuberosum HOM05D005007 ORTHO05D006053 2.7e-07 58.9 67 47.8
Carub.0007s2243 Capsella rubella HOM05D005007 ORTHO05D006053 3.5e-07 58.5 93 35.5
Gorai.009G160600 Gossypium raimondii HOM05D005007 ORTHO05D006053 3.5e-07 58.5 60 40.0
SGA_v2.0_scaffold181G39748 Striga asiatica HOM05D002453 ORTHO05D008746 1.7e-06 56.2 92 37.0
DCAR_005144 Daucus carota HOM05D005007 ORTHO05D006053 5.1e-06 54.7 61 42.6
Nn6g34499 Nelumbo nucifera HOM05D005007 ORTHO05D006053 8.6e-06 53.9 46 56.5


User provided reference genes

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