Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.011G165500 Phaseolus vulgaris HOM05D005139 ORTHO05D006125 2.8e-302 1041.2 539 100.0
Glyma.06G228700 Glycine max HOM05D005139 ORTHO05D006125 3.7e-286 987.6 538 93.9
Glyma.12G156300 Glycine max HOM05D005139 ORTHO05D006125 5.0e-283 977.2 538 94.1
Lj3g0013017 Lotus japonicus HOM05D005139 ORTHO05D006125 1.1e-271 939.5 539 90.0
Psat4g140160 Pisum sativum HOM05D005139 ORTHO05D006125 2.2e-270 935.3 536 86.0
Atru.chr2.2128 Acer truncatum HOM05D005139 ORTHO05D006125 1.7e-267 925.6 538 84.0
Ciclev10019589m.g Citrus clementina HOM05D005139 ORTHO05D006125 1.7e-267 925.6 538 88.3
Lalb_Chr03g0031181 Lupinus albus HOM05D005139 ORTHO05D006125 3.8e-267 924.5 538 88.8
MD11G1264600 Malus domestica HOM05D005139 ORTHO05D006125 9.4e-266 919.8 538 87.7
CiPaw.11G159600 Carya illinoinensis HOM05D005139 ORTHO05D006125 4.4e-263 911.0 538 87.5
Sed0024992 Sechium edule HOM05D005139 ORTHO05D006125 7.4e-263 910.2 538 86.1
Manes.15G095700 Manihot esculenta HOM05D005139 ORTHO05D006125 8.2e-262 906.7 538 82.7
Actinidia12584 Actinidia chinensis HOM05D005139 ORTHO05D006125 1.1e-261 906.4 533 85.4
Thecc.07G118200 Theobroma cacao HOM05D005139 ORTHO05D006125 1.1e-261 906.4 538 85.5
MELO3C008916.2 Cucumis melo HOM05D005139 ORTHO05D006125 2.4e-261 905.2 538 81.8
CsaV3_4G030530 Cucumis sativus L. HOM05D005139 ORTHO05D006125 2.4e-261 905.2 538 81.8
GSVIVG01014182001 Vitis vinifera HOM05D005139 ORTHO05D006125 3.1e-261 904.8 538 86.4
TWI38G1771 Tripterygium wilfordii HOM05D005139 ORTHO05D006125 7.0e-261 903.7 538 81.6
arahy.Tifrunner.gnm1.ann1.J0RB3X Arachis hypogaea HOM05D005139 ORTHO05D006125 7.7e-260 900.2 538 86.8
Duzib213G0634 Durio zibethinus HOM05D005139 ORTHO05D006125 1.3e-259 899.4 538 85.7
Eucgr.F01248 Eucalyptus grandis HOM05D005139 ORTHO05D006125 8.5e-259 896.7 538 81.6
Sopen12g006100 Solanum pennellii HOM05D005139 ORTHO05D006125 1.9e-258 895.6 538 84.4
ClCG04G002160 Citrullus lanatus HOM05D005139 ORTHO05D006125 3.2e-258 894.8 538 85.5
Dinv18369 Davidia involucrata HOM05D005139 ORTHO05D006125 5.5e-258 894.0 536 82.5
Gohir.D01G042704 Gossypium hirsutum HOM05D005139 ORTHO05D006125 5.5e-258 894.0 538 84.9
Gorai.002G053800 Gossypium raimondii HOM05D005139 ORTHO05D006125 5.5e-258 894.0 538 84.9
Solyc12g014320.2 Solanum lycopersicum HOM05D005139 ORTHO05D006125 7.2e-258 893.6 538 84.2
CSS0042561 Camellia sinensis var. sinensis HOM05D005139 ORTHO05D006125 1.6e-257 892.5 538 83.6
Ciclev10023690m.g Citrus clementina HOM05D005139 ORTHO05D006125 1.4e-256 889.4 538 81.6
Potri.011G108800 Populus trichocarpa HOM05D005139 ORTHO05D006125 2.3e-256 888.6 538 85.7
COL.COLO4_17530 Corchorus olitorius HOM05D005139 ORTHO05D006125 1.2e-255 886.3 537 85.5
Gohir.A01G053400 Gossypium hirsutum HOM05D005139 ORTHO05D006125 2.0e-255 885.6 538 83.8
CAN.G443.5 Capsicum annuum HOM05D005139 ORTHO05D006125 6.3e-254 880.6 538 80.9
Lsat_1_v5_gn_7_102480 Lactuca sativa HOM05D005139 ORTHO05D006125 6.3e-254 880.6 539 85.2
CANSAT35G0508 Cannabis sativa HOM05D005139 ORTHO05D006125 1.8e-253 879.0 533 85.6
Potri.001G389300 Populus trichocarpa HOM05D005139 ORTHO05D006125 1.8e-253 879.0 538 80.3
Cfa019555 Carpinus fangiana HOM05D005139 ORTHO05D006125 3.1e-253 878.2 538 80.7
Cc05_g10990 Coffea canephora HOM05D005139 ORTHO05D006125 1.6e-252 875.9 538 80.7
Peaxi162Scf00000g06812 Petunia axillaris HOM05D005139 ORTHO05D006125 2.0e-252 875.5 537 84.9
RcHm_v2.0_Chr5g0030761 Rosa chinensis HOM05D005139 ORTHO05D006125 2.7e-252 875.2 533 79.4
Medtr8g058380 Medicago truncatula HOM05D005139 ORTHO05D006125 1.0e-251 873.2 539 81.3
PSO063G5899 Papaver somniferum HOM05D005139 ORTHO05D006125 1.0e-251 873.2 533 83.7
FvH4_3g18210 Fragaria vesca HOM05D005139 ORTHO05D006125 3.8e-251 871.3 538 82.2
PSO782G2705 Papaver somniferum HOM05D005139 ORTHO05D006125 5.0e-251 870.9 533 83.5
Lj8A148G34 Lonicera japonica HOM05D005139 ORTHO05D006125 8.5e-251 870.2 560 80.4
HanXRQChr15g0495211 Helianthus annuus HOM05D005139 ORTHO05D006125 1.1e-250 869.8 539 83.3
THA.LOC104812316 Tarenaya hassleriana HOM05D005139 ORTHO05D006125 9.4e-250 866.7 537 83.4
FAN21G0160 Fragaria x ananassa HOM05D005139 ORTHO05D006125 6.1e-249 864.0 532 82.3
HanXRQChr11g0331031 Helianthus annuus HOM05D005139 ORTHO05D006125 1.8e-248 862.4 533 83.1
arahy.Tifrunner.gnm1.ann1.405FF9 Arachis hypogaea HOM05D005139 ORTHO05D006125 4.0e-248 861.3 539 84.4
Thhalv10018370m.g Eutrema salsugineum HOM05D005139 ORTHO05D006125 8.8e-248 860.1 538 80.3
FAN16G0871 Fragaria x ananassa HOM05D005139 ORTHO05D006125 8.8e-248 860.1 538 81.8
Sp5g33790 Schrenkiella parvula HOM05D005139 ORTHO05D006125 1.5e-247 859.4 538 80.9
FAN25G1917 Fragaria x ananassa HOM05D005139 ORTHO05D006125 2.0e-247 859.0 533 81.8
A07p43980 Brassica napus HOM05D005139 ORTHO05D006125 3.4e-247 858.2 538 78.1
BraA07t31905Z Brassica rapa HOM05D005139 ORTHO05D006125 3.4e-247 858.2 538 78.1
Aa31LG4G2260 Aethionema arabicum HOM05D005139 ORTHO05D006125 5.7e-247 857.4 537 81.2
BcaB03g16034 Brassica carinata HOM05D005139 ORTHO05D006125 5.7e-247 857.4 538 79.6
FAN11G0516 Fragaria x ananassa HOM05D005139 ORTHO05D006125 7.5e-247 857.1 538 81.6
BcaC08g47457 Brassica carinata HOM05D005139 ORTHO05D006125 2.8e-246 855.1 538 77.9
C06p52650 Brassica napus HOM05D005139 ORTHO05D006125 2.8e-246 855.1 538 77.9
AL2G39160 Arabidopsis lyrata HOM05D005139 ORTHO05D006125 3.1e-245 851.7 538 78.4
Sabra11G0096100 Salix brachista HOM05D005139 ORTHO05D006125 4.1e-245 851.3 576 75.9
Aqoxy3G02037 Aquilegia oxysepala HOM05D005139 ORTHO05D006125 1.2e-244 849.7 533 76.9
Sc03g0010570 Simmondsia chinensis HOM05D005139 ORTHO05D006125 7.7e-244 847.0 538 80.1
Carub.0002s2560 Capsella rubella HOM05D005139 ORTHO05D006125 1.0e-243 846.7 538 79.2
AT1G78770 Arabidopsis thaliana HOM05D005139 ORTHO05D006125 1.7e-243 845.9 538 79.9
CARHR072310 Cardamine hirsuta HOM05D005139 ORTHO05D006125 1.7e-243 845.9 538 79.9
Aqoxy4G00276 Aquilegia oxysepala HOM05D005139 ORTHO05D006125 2.3e-243 845.5 537 78.0
SalBow7G0115 Salvia bowleyana HOM05D005139 ORTHO05D006125 3.8e-243 844.7 594 72.6
SalBow7G2844 Salvia bowleyana HOM05D005139 ORTHO05D006125 5.0e-243 844.3 594 72.4
ECA236G1068 Erigeron canadensis HOM05D005139 ORTHO05D006125 1.5e-242 842.8 566 75.8
Migut.H02003 Erythranthe guttata HOM05D005139 ORTHO05D006125 6.8e-240 833.9 538 79.4
ATR0127G028 Amborella trichopoda HOM05D005139 ORTHO05D006125 9.2e-237 823.5 537 76.4
EL10Ac4g08361 Beta vulgaris HOM05D005139 ORTHO05D006125 1.6e-236 822.8 599 73.6
PGR083G0616 Punica granatum HOM05D005139 ORTHO05D006125 2.7e-236 822.0 551 76.2
QL08p026113 Quercus lobata HOM05D005139 ORTHO05D006125 1.1e-234 816.6 629 68.2
MBI06_g15765_MAGBIO Magnolia biondii HOM05D005139 ORTHO05D006125 5.6e-234 814.3 529 80.7
Ah.04g164210 Amaranthus hybridus HOM05D005139 ORTHO05D006125 3.4e-231 805.1 533 76.0
Prupe.4G161700 Prunus persica HOM05D005139 ORTHO05D006125 1.2e-228 796.6 548 78.6
Nitab4.5_0000035g0250 Nicotiana tabacum HOM05D005139 ORTHO05D006125 6.6e-227 790.8 538 75.1
Haze_09316 Corylus avellana HOM05D005139 ORTHO05D006125 1.9e-226 789.3 534 75.1
AUR62037557 Chenopodium quinoa HOM05D005139 ORTHO05D006125 2.5e-218 762.3 538 72.3
VMungo1127G1423 Vigna mungo HOM05D005139 ORTHO05D006125 9.5e-218 760.4 377 98.7
Prupe.4G162300 Prunus persica HOM05D005139 ORTHO05D006125 1.2e-217 760.0 451 86.9
Zm00001eb399210 Zea mays HOM05D005139 ORTHO05D006125 2.2e-214 749.2 530 68.7
Nitab4.5_0007851g0020 Nicotiana tabacum HOM05D005139 ORTHO05D006125 1.6e-212 743.0 549 70.9
Os03g0236966 Oryza sativa ssp. japonica HOM05D005139 ORTHO05D006125 1.6e-212 743.0 530 70.6
unitig_26.g9517 Utricularia gibba HOM05D005139 ORTHO05D006125 3.3e-210 735.3 516 73.6
SGA_v2.0_scaffold130G34288 Striga asiatica HOM05D005139 ORTHO05D006125 5.8e-207 724.5 538 70.3
DCAR_013162 Daucus carota HOM05D005139 ORTHO05D006125 1.9e-194 682.9 538 70.4
vmacro11947 Vaccinium macrocarpon HOM05D005139 ORTHO05D006125 1.1e-192 677.2 540 67.0
SHI27616 Sapria himalayana HOM05D005139 ORTHO05D006125 2.4e-192 676.0 579 61.0
TAR626G0095 Trochodendron aralioides HOM05D005139 ORTHO05D006125 2.6e-191 672.5 376 86.7
Hund10469 Selenicereus undatus HOM05D005139 ORTHO05D006125 7.6e-191 671.0 400 80.5
Oeu005379.1 Olea europaea HOM05D005139 ORTHO05D006125 9.0e-184 647.5 428 77.1
AUR62019588 Chenopodium quinoa HOM05D005139 ORTHO05D006125 1.3e-182 643.7 533 64.4
Ca_19229_v3 Cicer arietinum L. HOM05D005139 ORTHO05D006125 6.7e-179 631.3 364 83.2
C03p92750 Brassica napus HOM05D005139 ORTHO05D006125 1.3e-177 627.1 440 70.7
Mapoly0145s0019 Marchantia polymorpha HOM05D005139 ORTHO05D006125 1.6e-172 610.1 536 56.9
Pp3c16_8790 Physcomitrium patens HOM05D005139 ORTHO05D006125 2.7e-172 609.4 534 56.2
SMO244G0086 Selaginella moellendorffii HOM05D005139 ORTHO05D006125 4.2e-157 558.9 530 53.2
Dinv15003 Davidia involucrata HOM05D005139 ORTHO05D006125 9.7e-154 547.7 383 73.9
SEGI_23856 Sequoiadendron giganteum HOM05D005139 ORTHO05D006125 1.0e-139 501.1 314 72.6
AagrBONN_evm.TU.Sc2ySwM_368.2003 Anthoceros agrestis HOM05D005139 ORTHO05D006125 2.6e-138 496.5 496 50.8
CDE06G2579 Ceratophyllum demersum HOM05D005139 ORTHO05D006125 1.3e-137 494.2 487 54.4
Zm00001eb010020 Zea mays HOM05D005139 ORTHO05D006125 1.1e-136 491.1 367 64.9
TPR.G5772 Trifolium pratense HOM05D005139 ORTHO05D006125 5.9e-135 485.3 269 89.6
TPR.G5739 Trifolium pratense HOM05D005139 ORTHO05D006125 7.5e-122 441.8 270 80.0
Cpa.g.sc77.24 Carica papaya HOM05D005139 ORTHO05D006125 7.8e-111 405.2 378 61.4
MD00G1077100 Malus domestica HOM05D005139 ORTHO05D006125 6.8e-107 392.1 325 65.8
MCO01G684 Micromonas commoda HOM05D005139 ORTHO05D006125 2.6e-106 390.2 625 37.9
RcHm_v2.0_Chr1g0337671 Rosa chinensis HOM05D005139 ORTHO05D006125 4.9e-105 386.0 220 82.3
RcHm_v2.0_Chr3g0469831 Rosa chinensis HOM05D005139 ORTHO05D006125 3.6e-100 369.8 272 68.8
CBR_g50377 Chara braunii HOM05D005139 ORTHO05D006125 1.1e-75 288.5 401 40.1
Ca_28352_v3 Cicer arietinum L. HOM05D005139 ORTHO05D006125 1.4e-72 278.1 154 91.6
Potri.001G389500 Populus trichocarpa HOM05D005139 ORTHO05D006125 9.6e-69 265.4 158 79.7
MD03G1275700 Malus domestica HOM05D005139 ORTHO05D006125 1.6e-68 264.6 192 71.4
VMungo1127G2083 Vigna mungo HOM05D005139 ORTHO05D006125 1.1e-64 251.9 171 76.0
Ciclev10023408m.g Citrus clementina HOM05D005139 ORTHO05D006125 2.5e-64 250.8 234 57.7
HPP92_004206 Vanilla planifolia HOM05D005139 ORTHO05D006125 9.3e-64 248.8 152 79.6
Cfa023795 Carpinus fangiana HOM05D005139 ORTHO05D006125 1.0e-62 245.4 496 31.9
BolC6t40284H Brassica oleracea HOM05D005139 ORTHO05D006125 1.5e-61 241.5 139 85.6
PRCOL_00005307 Prasinoderma coloniale HOM05D005139 ORTHO05D006125 1.9e-61 241.1 596 29.4
HPP92_004205 Vanilla planifolia HOM05D005139 ORTHO05D006125 1.9e-61 241.1 153 77.1
Ciclev10023736m.g Citrus clementina HOM05D005139 ORTHO05D006125 5.5e-56 223.0 152 77.0
Ciclev10023923m.g Citrus clementina HOM05D005139 ORTHO05D006125 6.1e-55 219.5 152 75.7
Cre13.g562950 Chlamydomonas reinhardtii HOM05D005139 ORTHO05D006125 1.4e-51 208.4 816 22.9
CBR_g50375 Chara braunii HOM05D005139 ORTHO05D006125 3.8e-49 200.3 163 58.3
Aqoxy256s002 Aquilegia oxysepala HOM05D005139 ORTHO05D006125 2.0e-45 188.0 109 84.4
Ciclev10024516m.g Citrus clementina HOM05D005139 ORTHO05D006125 2.5e-45 187.6 238 47.1
Haze_27412 Corylus avellana HOM05D005139 ORTHO05D006125 1.7e-44 184.9 232 43.5
Cpa.g.sc77.22 Carica papaya HOM05D005139 ORTHO05D006125 7.9e-39 166.0 136 63.2
Hund10473 Selenicereus undatus HOM05D005139 ORTHO05D006125 1.5e-37 161.8 134 59.7
MD03G1275800 Malus domestica HOM05D005139 ORTHO05D006125 2.0e-34 151.4 85 89.4
Sabra16G0255500 Salix brachista HOM05D005139 ORTHO05D006125 2.2e-33 147.9 202 44.1
vmacro11946 Vaccinium macrocarpon HOM05D005139 ORTHO05D006125 2.6e-29 134.4 114 64.9
ClCG05G009350 Citrullus lanatus HOM05D005139 ORTHO05D006125 1.6e-10 72.0 53 67.9
ClCG07G010240 Citrullus lanatus HOM05D005139 ORTHO05D006125 5.2e-06 57.0 70 52.9
Carub.0002s1494 Capsella rubella HOM05D001168 ORTHO05D001044 6.8e-06 56.6 44 65.9


User provided reference genes

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