Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.011G165300 Phaseolus vulgaris HOM05D005489 ORTHO05D006629 7.8e-76 287.0 136 100.0
VMungo1127G1458 Vigna mungo HOM05D005489 ORTHO05D006629 1.1e-74 283.1 136 97.8
Glyma.04G253700 Glycine max HOM05D005489 ORTHO05D006629 8.9e-72 273.5 136 94.1
Glyma.06G108600 Glycine max HOM05D005489 ORTHO05D006629 1.5e-71 272.7 136 94.1
Ca_25761_v3 Cicer arietinum L. HOM05D005489 ORTHO05D006629 2.0e-71 272.3 136 93.4
Medtr3g073300 Medicago truncatula HOM05D005489 ORTHO05D006629 5.8e-71 270.8 136 91.9
arahy.Tifrunner.gnm1.ann1.64ZY3M Arachis hypogaea HOM05D005489 ORTHO05D006629 7.5e-71 270.4 136 91.9
Lj1g0000272 Lotus japonicus HOM05D005489 ORTHO05D006629 7.5e-71 270.4 136 94.1
TPR.G32948 Trifolium pratense HOM05D005489 ORTHO05D006629 7.5e-71 270.4 136 91.9
arahy.Tifrunner.gnm1.ann1.204R5H Arachis hypogaea HOM05D005489 ORTHO05D006629 1.7e-70 269.2 136 91.2
Psat5g135600 Pisum sativum HOM05D005489 ORTHO05D006629 1.7e-70 269.2 136 91.9
Lalb_Chr08g0241711 Lupinus albus HOM05D005489 ORTHO05D006629 4.9e-70 267.7 136 91.2
Lalb_Chr11g0065701 Lupinus albus HOM05D005489 ORTHO05D006629 1.9e-69 265.8 136 90.4
Sopen11g008580 Solanum pennellii HOM05D005489 ORTHO05D006629 2.5e-66 255.4 135 85.9
Solyc11g013550.2 Solanum lycopersicum HOM05D005489 ORTHO05D006629 5.6e-66 254.2 135 85.2
THA.LOC104806808 Tarenaya hassleriana HOM05D005489 ORTHO05D006629 2.8e-65 251.9 136 83.8
PGSC0003DMG400027793 Solanum tuberosum HOM05D005489 ORTHO05D006629 8.1e-65 250.4 135 85.2
Ciclev10002818m.g Citrus clementina HOM05D005489 ORTHO05D006629 1.1e-64 250.0 136 83.8
TWI56G0906 Tripterygium wilfordii HOM05D005489 ORTHO05D006629 1.4e-64 249.6 136 83.1
Thecc.08G116800 Theobroma cacao HOM05D005489 ORTHO05D006629 1.8e-64 249.2 136 84.6
PGR044G1289 Punica granatum HOM05D005489 ORTHO05D006629 3.1e-64 248.4 136 83.8
CAN.G255.20 Capsicum annuum HOM05D005489 ORTHO05D006629 6.8e-64 247.3 135 83.7
COL.COLO4_32811 Corchorus olitorius HOM05D005489 ORTHO05D006629 8.9e-64 246.9 136 83.1
Thhalv10005115m.g Eutrema salsugineum HOM05D005489 ORTHO05D006629 1.2e-63 246.5 136 82.4
Manes.18G073000 Manihot esculenta HOM05D005489 ORTHO05D006629 1.2e-63 246.5 136 82.4
Dinv26716 Davidia involucrata HOM05D005489 ORTHO05D006629 1.5e-63 246.1 136 82.4
Duzib093G1687 Durio zibethinus HOM05D005489 ORTHO05D006629 1.5e-63 246.1 136 82.4
BcaB03g13640 Brassica carinata HOM05D005489 ORTHO05D006629 2.0e-63 245.7 136 83.1
A05p23180 Brassica napus HOM05D005489 ORTHO05D006629 2.0e-63 245.7 136 83.1
C05p36630 Brassica napus HOM05D005489 ORTHO05D006629 2.0e-63 245.7 136 83.1
BraA05t21185Z Brassica rapa HOM05D005489 ORTHO05D006629 2.0e-63 245.7 136 83.1
Gohir.A06G041000 Gossypium hirsutum HOM05D005489 ORTHO05D006629 2.0e-63 245.7 136 82.4
Gohir.D06G041900 Gossypium hirsutum HOM05D005489 ORTHO05D006629 2.0e-63 245.7 136 82.4
Gorai.010G047100 Gossypium raimondii HOM05D005489 ORTHO05D006629 2.0e-63 245.7 136 82.4
FvH4_5g38950 Fragaria vesca HOM05D005489 ORTHO05D006629 2.6e-63 245.4 136 83.1
FAN04G1587 Fragaria x ananassa HOM05D005489 ORTHO05D006629 2.6e-63 245.4 136 83.1
FAN08G2064 Fragaria x ananassa HOM05D005489 ORTHO05D006629 2.6e-63 245.4 136 83.1
FAN18G3455 Fragaria x ananassa HOM05D005489 ORTHO05D006629 2.6e-63 245.4 136 83.1
Gohir.A02G075000 Gossypium hirsutum HOM05D005489 ORTHO05D006629 2.6e-63 245.4 136 82.4
CARHR034780 Cardamine hirsuta HOM05D005489 ORTHO05D006629 3.4e-63 245.0 136 81.6
MELO3C022783.2 Cucumis melo HOM05D005489 ORTHO05D006629 3.4e-63 245.0 136 81.6
QL12p035283 Quercus lobata HOM05D005489 ORTHO05D006629 3.4e-63 245.0 135 82.2
Sed0015736 Sechium edule HOM05D005489 ORTHO05D006629 3.4e-63 245.0 136 81.6
AL1G51120 Arabidopsis lyrata HOM05D005489 ORTHO05D006629 4.4e-63 244.6 136 82.4
AT1G36980 Arabidopsis thaliana HOM05D005489 ORTHO05D006629 4.4e-63 244.6 136 82.4
Hma1.2p1_0221F.1_g093180 Hydrangea macrophylla HOM05D005489 ORTHO05D006629 4.4e-63 244.6 136 82.4
GSVIVG01008943001 Vitis vinifera HOM05D005489 ORTHO05D006629 4.4e-63 244.6 136 81.6
Atru.chr13.1318 Acer truncatum HOM05D005489 ORTHO05D006629 5.8e-63 244.2 136 82.4
Atru.chr13.1362 Acer truncatum HOM05D005489 ORTHO05D006629 5.8e-63 244.2 136 82.4
Gohir.A01G187700 Gossypium hirsutum HOM05D005489 ORTHO05D006629 5.8e-63 244.2 136 81.6
MD15G1359200 Malus domestica HOM05D005489 ORTHO05D006629 5.8e-63 244.2 136 82.4
Sp1g31180 Schrenkiella parvula HOM05D005489 ORTHO05D006629 5.8e-63 244.2 136 82.4
THA.LOC104813132 Tarenaya hassleriana HOM05D005489 ORTHO05D006629 5.8e-63 244.2 136 81.6
Carub.0001s3388 Capsella rubella HOM05D005489 ORTHO05D006629 7.6e-63 243.8 136 82.4
CiPaw.05G228700 Carya illinoinensis HOM05D005489 ORTHO05D006629 7.6e-63 243.8 136 81.6
Peaxi162Scf01011g00023 Petunia axillaris HOM05D005489 ORTHO05D006629 7.6e-63 243.8 135 84.4
Sabra02G0070300 Salix brachista HOM05D005489 ORTHO05D006629 7.6e-63 243.8 136 82.4
Aqoxy5G02479 Aquilegia oxysepala HOM05D005489 ORTHO05D006629 9.9e-63 243.4 136 82.4
TWI12G0464 Tripterygium wilfordii HOM05D005489 ORTHO05D006629 9.9e-63 243.4 136 81.6
TAR628G1556 Trochodendron aralioides HOM05D005489 ORTHO05D006629 9.9e-63 243.4 136 81.6
Gohir.D02G082100 Gossypium hirsutum HOM05D005489 ORTHO05D006629 1.3e-62 243.0 136 80.9
Potri.002G089300 Populus trichocarpa HOM05D005489 ORTHO05D006629 1.3e-62 243.0 136 81.6
Duzib041G0073 Durio zibethinus HOM05D005489 ORTHO05D006629 2.2e-62 242.3 136 81.6
Dinv27383 Davidia involucrata HOM05D005489 ORTHO05D006629 4.9e-62 241.1 136 80.9
HanXRQChr11g0326271 Helianthus annuus HOM05D005489 ORTHO05D006629 4.9e-62 241.1 136 81.6
Lsat_1_v5_gn_4_135561 Lactuca sativa HOM05D005489 ORTHO05D006629 4.9e-62 241.1 136 81.6
HanXRQChr09g0260151 Helianthus annuus HOM05D005489 ORTHO05D006629 6.4e-62 240.7 135 81.5
CDE06G1809 Ceratophyllum demersum HOM05D005489 ORTHO05D006629 8.4e-62 240.4 136 80.1
Prupe.1G506000 Prunus persica HOM05D005489 ORTHO05D006629 8.4e-62 240.4 136 81.6
SGA_v2.0_scaffold118G32436 Striga asiatica HOM05D005489 ORTHO05D006629 8.4e-62 240.4 136 80.9
TAR197G0004 Trochodendron aralioides HOM05D005489 ORTHO05D006629 1.1e-61 240.0 136 80.1
RcHm_v2.0_Chr7g0240921 Rosa chinensis HOM05D005489 ORTHO05D006629 1.4e-61 239.6 136 79.4
SGA_v2.0_scaffold24G10504 Striga asiatica HOM05D005489 ORTHO05D006629 1.4e-61 239.6 136 80.1
MSTRG.1486 Avicennia marina HOM05D005489 ORTHO05D006629 4.1e-61 238.0 136 80.1
SalBow1G3581 Salvia bowleyana HOM05D005489 ORTHO05D006629 5.4e-61 237.7 133 81.2
Nn5g27958 Nelumbo nucifera HOM05D005489 ORTHO05D006629 9.2e-61 236.9 133 79.7
PSO017G5790 Papaver somniferum HOM05D005489 ORTHO05D006629 9.2e-61 236.9 136 80.1
PSO170G3859 Papaver somniferum HOM05D005489 ORTHO05D006629 9.2e-61 236.9 136 80.1
Potri.005G171901 Populus trichocarpa HOM05D005489 ORTHO05D006629 1.2e-60 236.5 136 79.4
ECA232G0625 Erigeron canadensis HOM05D005489 ORTHO05D006629 2.1e-60 235.7 133 82.7
EL10Ac1g00039 Beta vulgaris HOM05D005489 ORTHO05D006629 2.7e-60 235.3 136 78.7
Nn1g08538 Nelumbo nucifera HOM05D005489 ORTHO05D006629 2.7e-60 235.3 135 77.0
Migut.C01190 Erythranthe guttata HOM05D005489 ORTHO05D006629 1.0e-59 233.4 136 76.5
Migut.N03320 Erythranthe guttata HOM05D005489 ORTHO05D006629 2.5e-58 228.8 136 78.7
Nitab4.5_0000051g0120 Nicotiana tabacum HOM05D005489 ORTHO05D006629 1.2e-57 226.5 124 85.5
MBI06_g01046_MAGBIO Magnolia biondii HOM05D005489 ORTHO05D006629 1.6e-57 226.1 135 75.6
Oeu043793.1 Olea europaea HOM05D005489 ORTHO05D006629 1.6e-57 226.1 138 75.4
Aa31LG6G9070 Aethionema arabicum HOM05D005489 ORTHO05D006629 2.1e-57 225.7 124 81.5
Oeu032962.1 Olea europaea HOM05D005489 ORTHO05D006629 6.2e-57 224.2 136 77.2
Nitab4.5_0002332g0020 Nicotiana tabacum HOM05D005489 ORTHO05D006629 5.2e-56 221.1 119 85.7
FAN13G3020 Fragaria x ananassa HOM05D005489 ORTHO05D006629 1.2e-55 219.9 130 79.2
Sc01g0001550 Simmondsia chinensis HOM05D005489 ORTHO05D006629 1.5e-55 219.5 124 79.0
DCAR_014792 Daucus carota HOM05D005489 ORTHO05D006629 2.0e-55 219.2 131 75.6
Hund16821 Selenicereus undatus HOM05D005489 ORTHO05D006629 2.6e-55 218.8 129 76.0
Gorai.002G220400 Gossypium raimondii HOM05D005489 ORTHO05D006629 5.8e-55 217.6 124 79.8
Rhsim06G0109100 Rhododendron simsii HOM05D005489 ORTHO05D006629 1.7e-54 216.1 124 80.6
Os02g0566900 Oryza sativa ssp. japonica HOM05D005489 ORTHO05D006629 1.1e-53 213.4 133 71.4
HPP92_002297 Vanilla planifolia HOM05D005489 ORTHO05D006629 1.1e-53 213.4 135 71.1
Zm00001eb100550 Zea mays HOM05D005489 ORTHO05D006629 1.4e-53 213.0 134 73.1
Zm00001eb244520 Zea mays HOM05D005489 ORTHO05D006629 1.9e-53 212.6 137 67.9
Os09g0453000 Oryza sativa ssp. japonica HOM05D005489 ORTHO05D006629 7.1e-53 210.7 134 73.1
Cc10_g10440 Coffea canephora HOM05D005489 ORTHO05D006629 2.7e-52 208.8 124 81.5
Gohir.D01G181900 Gossypium hirsutum HOM05D005489 ORTHO05D006629 2.7e-52 208.8 124 78.2
HPP92_005944 Vanilla planifolia HOM05D005489 ORTHO05D006629 1.0e-51 206.8 133 68.4
unitig_747.g21477 Utricularia gibba HOM05D003597 ORTHO05D004420 2.3e-51 205.7 206 52.4
BolC5t32398H Brassica oleracea HOM05D005489 ORTHO05D006629 1.1e-50 203.4 120 80.0
AagrBONN_evm.TU.Sc2ySwM_344.2049 Anthoceros agrestis HOM05D005489 ORTHO05D006629 1.9e-50 202.6 129 69.0
Actinidia29431 Actinidia chinensis HOM05D005489 ORTHO05D006629 2.5e-50 202.2 133 69.2
SEGI_34511 Sequoiadendron giganteum HOM05D005489 ORTHO05D006629 4.3e-50 201.4 136 69.1
BcaC05g27681 Brassica carinata HOM05D005489 ORTHO05D006629 6.2e-49 197.6 120 76.7
SMO116G0262 Selaginella moellendorffii HOM05D005489 ORTHO05D006629 8.1e-49 197.2 129 68.2
Mapoly0004s0020 Marchantia polymorpha HOM05D005489 ORTHO05D006629 6.4e-46 187.6 151 60.9
Pp3c1_10200 Physcomitrium patens HOM05D005489 ORTHO05D006629 5.4e-45 184.5 134 61.9
Pp3c2_28270 Physcomitrium patens HOM05D005489 ORTHO05D006629 9.3e-45 183.7 134 62.7
CBR_g30829 Chara braunii HOM05D005489 ORTHO05D006629 3.7e-41 171.8 128 60.2
Gorai.005G092000 Gossypium raimondii HOM05D005489 ORTHO05D006629 6.9e-40 167.5 92 84.8
Sabra05G0129400 Salix brachista HOM05D005489 ORTHO05D006629 3.8e-38 161.8 125 67.2
CANSAT25G2554 Cannabis sativa HOM05D005489 ORTHO05D006629 1.5e-34 149.8 85 74.1
Haze_00523 Corylus avellana HOM05D005489 ORTHO05D006629 3.3e-34 148.7 76 84.2
BcaC05g27682 Brassica carinata HOM05D005489 ORTHO05D006629 5.6e-34 147.9 74 86.5
C05p36640 Brassica napus HOM05D005489 ORTHO05D006629 5.6e-34 147.9 74 86.5
Cfa015959 Carpinus fangiana HOM05D005489 ORTHO05D006629 2.1e-33 146.0 131 57.3
ClCG03G009110 Citrullus lanatus HOM05D005489 ORTHO05D006629 8.2e-33 144.1 74 82.4
CsaV3_5G023520 Cucumis sativus L. HOM05D005489 ORTHO05D006629 8.2e-33 144.1 74 82.4
TAR127G0005 Trochodendron aralioides HOM05D005489 ORTHO05D006629 1.1e-32 143.7 75 81.3
DCAR_023128 Daucus carota HOM05D005489 ORTHO05D006629 1.4e-32 143.3 75 81.3
ATR0121G008 Amborella trichopoda HOM05D005489 ORTHO05D006629 5.8e-31 137.9 74 81.1
Nn2g15248 Nelumbo nucifera HOM05D005489 ORTHO05D006629 2.3e-27 125.9 73 72.6
Oeu050268.1 Olea europaea HOM05D005489 ORTHO05D006629 5.1e-27 124.8 76 75.0
AUR62004694 Chenopodium quinoa HOM05D005489 ORTHO05D006629 6.3e-25 117.9 140 50.0
Sopen11g008620 Solanum pennellii HOM05D000147 ORTHO05D004360 1.8e-24 116.3 72 76.4
Cre01.g042950 Chlamydomonas reinhardtii HOM05D005489 ORTHO05D006629 2.0e-23 112.8 139 36.7
PRCOL_00003843 Prasinoderma coloniale HOM05D005489 ORTHO05D006629 1.6e-20 103.2 117 47.0
Eucgr.F04378 Eucalyptus grandis HOM05D005489 ORTHO05D006629 1.3e-14 83.6 47 72.3
ClCG03G009140 Citrullus lanatus HOM05D005489 ORTHO05D006629 1.7e-14 83.2 50 82.0
Cre03.g159300 Chlamydomonas reinhardtii HOM05D005489 ORTHO05D006629 1.1e-13 80.5 124 34.7
SalBow7G4082 Salvia bowleyana HOM05D005489 ORTHO05D006629 7.9e-12 74.3 165 34.5
Solyc11g013660.1 Solanum lycopersicum HOM05D005489 ORTHO05D006629 3.0e-11 72.4 70 57.1
Os08g0469200 Oryza sativa ssp. japonica HOM05D005489 ORTHO05D006629 1.8e-08 63.2 67 49.3
SalBow7G1125 Salvia bowleyana HOM05D002998 ORTHO05D006629 5.3e-08 61.6 36 66.7


User provided reference genes

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