Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.011G162800 Phaseolus vulgaris HOM05D006014 ORTHO05D007608 2.0e-87 325.9 179 100.0
VMungo1127G0848 Vigna mungo HOM05D006014 ORTHO05D007608 9.0e-80 300.4 179 91.6
Glyma.12G162300 Glycine max HOM05D006014 ORTHO05D007608 2.9e-70 268.9 181 82.9
Glyma.06G236200 Glycine max HOM05D006014 ORTHO05D007608 3.8e-70 268.5 178 84.8
TPR.G28172 Trifolium pratense HOM05D006014 ORTHO05D007608 1.1e-58 230.3 178 76.4
Lj3g0022855 Lotus japonicus HOM05D006014 ORTHO05D007608 1.5e-58 229.9 173 75.1
Ca_23028_v3 Cicer arietinum L. HOM05D006014 ORTHO05D007608 4.8e-57 224.9 172 75.6
Ca_23030_v3 Cicer arietinum L. HOM05D006014 ORTHO05D007608 4.8e-57 224.9 172 75.6
Psat4g136440 Pisum sativum HOM05D006014 ORTHO05D007608 4.8e-57 224.9 176 73.3
Medtr8g061350 Medicago truncatula HOM05D006014 ORTHO05D007608 5.5e-53 211.5 175 72.6
Potri.001G396600 Populus trichocarpa HOM05D006014 ORTHO05D007608 1.0e-51 207.2 179 65.4
Manes.15G089600 Manihot esculenta HOM05D006014 ORTHO05D007608 1.8e-51 206.5 186 65.6
Lalb_Chr07g0182891 Lupinus albus HOM05D006014 ORTHO05D007608 5.1e-51 204.9 179 69.3
arahy.Tifrunner.gnm1.ann1.FY4UJ9 Arachis hypogaea HOM05D006014 ORTHO05D007608 6.7e-51 204.5 219 59.4
Sabra16G0259700 Salix brachista HOM05D006014 ORTHO05D007608 1.1e-50 203.8 182 63.7
ClCG11G017820 Citrullus lanatus HOM05D006014 ORTHO05D007608 1.9e-50 203.0 179 70.4
QL08p024005 Quercus lobata HOM05D006014 ORTHO05D007608 3.3e-50 202.2 176 69.3
TAR626G1430 Trochodendron aralioides HOM05D006014 ORTHO05D007608 6.3e-49 198.0 175 68.0
CANSAT35G1465 Cannabis sativa HOM05D006014 ORTHO05D007608 1.1e-48 197.2 187 62.6
Thecc.07G096300 Theobroma cacao HOM05D006014 ORTHO05D007608 3.1e-48 195.7 189 64.6
FAN21G0470 Fragaria x ananassa HOM05D006014 ORTHO05D007608 4.1e-48 195.3 185 67.6
FvH4_3g19430 Fragaria vesca HOM05D006014 ORTHO05D007608 5.3e-48 194.9 185 67.6
FAN11G2300 Fragaria x ananassa HOM05D006014 ORTHO05D007608 5.3e-48 194.9 185 67.6
Gohir.A04G035600 Gossypium hirsutum HOM05D006014 ORTHO05D007608 9.0e-48 194.1 184 64.1
Haze_09409 Corylus avellana HOM05D005607 ORTHO05D008142 1.2e-47 193.7 146 75.3
CsaV3_4G033460 Cucumis sativus L. HOM05D006014 ORTHO05D007608 1.2e-47 193.7 186 66.7
MELO3C025609.2 Cucumis melo HOM05D006014 ORTHO05D007608 2.0e-47 193.0 186 66.7
Gohir.D05G347800 Gossypium hirsutum HOM05D006014 ORTHO05D007608 2.6e-47 192.6 184 63.0
Gorai.009G375600 Gossypium raimondii HOM05D006014 ORTHO05D007608 2.6e-47 192.6 184 63.0
MD03G1232600 Malus domestica HOM05D006014 ORTHO05D007608 5.9e-47 191.4 183 66.1
AUR62036161 Chenopodium quinoa HOM05D006014 ORTHO05D007608 1.0e-46 190.7 171 64.9
Ciclev10009636m.g Citrus clementina HOM05D006014 ORTHO05D007608 1.3e-46 190.3 174 65.5
FAN25G0078 Fragaria x ananassa HOM05D006014 ORTHO05D007608 1.3e-46 190.3 185 65.9
arahy.Tifrunner.gnm1.ann1.QT5AN8 Arachis hypogaea HOM05D006014 ORTHO05D007608 2.2e-46 189.5 268 48.1
RcHm_v2.0_Chr5g0032711 Rosa chinensis HOM05D006014 ORTHO05D007608 2.2e-46 189.5 176 66.5
TWI38G2086 Tripterygium wilfordii HOM05D006014 ORTHO05D007608 2.2e-46 189.5 183 63.9
Nn1g04203 Nelumbo nucifera HOM05D006014 ORTHO05D007608 3.8e-46 188.7 170 66.5
GSVIVG01014290001 Vitis vinifera HOM05D006014 ORTHO05D007608 5.0e-46 188.3 169 66.3
Duzib170G0605 Durio zibethinus HOM05D006014 ORTHO05D007608 8.5e-46 187.6 195 61.0
Sed0004006 Sechium edule HOM05D006014 ORTHO05D007608 1.1e-45 187.2 178 65.2
Prupe.4G176000 Prunus persica HOM05D006014 ORTHO05D007608 1.4e-45 186.8 189 64.6
CSS0037767 Camellia sinensis var. sinensis HOM05D006014 ORTHO05D007608 1.9e-45 186.4 186 62.9
MD11G1253300 Malus domestica HOM05D006014 ORTHO05D007608 1.9e-45 186.4 185 64.3
Ah.06g184580 Amaranthus hybridus HOM05D006014 ORTHO05D007608 4.2e-45 185.3 177 62.1
AUR62019472 Chenopodium quinoa HOM05D006014 ORTHO05D007608 4.2e-45 185.3 171 63.7
COL.COLO4_03477 Corchorus olitorius HOM05D006014 ORTHO05D007608 5.5e-45 184.9 193 60.1
EL10Ac4g08237 Beta vulgaris HOM05D006014 ORTHO05D007608 7.2e-45 184.5 173 63.6
CiPaw.11G167800 Carya illinoinensis HOM05D006014 ORTHO05D007608 9.4e-45 184.1 143 71.3
PGR083G0398 Punica granatum HOM05D006014 ORTHO05D007608 1.2e-44 183.7 179 63.7
Dinv14938 Davidia involucrata HOM05D006014 ORTHO05D007608 1.6e-44 183.3 188 60.6
Nitab4.5_0003033g0060 Nicotiana tabacum HOM05D006014 ORTHO05D007608 3.6e-44 182.2 175 62.3
CDE10G0058 Ceratophyllum demersum HOM05D006014 ORTHO05D007608 7.9e-44 181.0 181 60.2
Sc03g0010200 Simmondsia chinensis HOM05D006014 ORTHO05D007608 1.0e-43 180.6 180 65.0
Nitab4.5_0013317g0010 Nicotiana tabacum HOM05D006014 ORTHO05D007608 1.8e-43 179.9 173 61.3
TAR624G0768 Trochodendron aralioides HOM05D006014 ORTHO05D007608 3.0e-43 179.1 161 65.2
CDE10G1292 Ceratophyllum demersum HOM05D006014 ORTHO05D007608 3.9e-43 178.7 178 61.2
Eucgr.F01167 Eucalyptus grandis HOM05D006014 ORTHO05D007608 3.9e-43 178.7 182 61.5
Peaxi162Scf00069g01737 Petunia axillaris HOM05D006014 ORTHO05D007608 5.1e-43 178.3 174 62.1
THA.LOC104815561 Tarenaya hassleriana HOM05D006014 ORTHO05D007608 1.1e-42 177.2 185 61.1
Migut.H01957 Erythranthe guttata HOM05D006014 ORTHO05D007608 2.5e-42 176.0 181 59.1
Hma1.2p1_1411F.1_g281760 Hydrangea macrophylla HOM05D006014 ORTHO05D007608 4.3e-42 175.3 186 61.3
Cc05_g11740 Coffea canephora HOM05D006014 ORTHO05D007608 5.7e-42 174.9 181 60.2
Oeu051088.1 Olea europaea HOM05D006014 ORTHO05D007608 1.3e-41 173.7 168 62.5
PSO675G1148 Papaver somniferum HOM05D006014 ORTHO05D007608 2.2e-41 172.9 187 59.4
Hund04492 Selenicereus undatus HOM05D006014 ORTHO05D007608 6.3e-41 171.4 180 60.6
A03p39200 Brassica napus HOM05D006014 ORTHO05D007608 8.2e-41 171.0 193 56.5
Cfa020606 Carpinus fangiana HOM05D006014 ORTHO05D007608 1.1e-40 170.6 123 77.2
MBI07_g30170_MAGBIO Magnolia biondii HOM05D006014 ORTHO05D007608 1.1e-40 170.6 125 69.6
PSO541G1420 Papaver somniferum HOM05D006014 ORTHO05D007608 1.4e-40 170.2 187 58.8
Solyc07g062870.3 Solanum lycopersicum HOM05D006014 ORTHO05D007608 1.4e-40 170.2 172 59.9
Sopen07g031070 Solanum pennellii HOM05D006014 ORTHO05D007608 1.4e-40 170.2 172 59.9
BcaB04g20944 Brassica carinata HOM05D006014 ORTHO05D007608 1.8e-40 169.9 180 60.0
CARHR090180 Cardamine hirsuta HOM05D006014 ORTHO05D007608 1.8e-40 169.9 194 56.7
C01p49380 Brassica napus HOM05D006014 ORTHO05D007608 3.1e-40 169.1 192 54.7
PGSC0003DMG400012405 Solanum tuberosum HOM05D006014 ORTHO05D007608 3.1e-40 169.1 180 58.9
DCAR_019570 Daucus carota HOM05D006014 ORTHO05D007608 5.3e-40 168.3 188 56.9
BolC1t04895H Brassica oleracea HOM05D006014 ORTHO05D007608 6.9e-40 167.9 186 55.9
MSTRG.12894 Avicennia marina HOM05D006014 ORTHO05D007608 1.5e-39 166.8 176 61.4
Aa31LG8G2390 Aethionema arabicum HOM05D006014 ORTHO05D007608 2.0e-39 166.4 194 55.2
AL3G27580 Arabidopsis lyrata HOM05D006014 ORTHO05D007608 2.6e-39 166.0 195 61.0
Oeu037371.1 Olea europaea HOM05D006014 ORTHO05D007608 3.4e-39 165.6 163 62.0
Aqoxy1G02326 Aquilegia oxysepala HOM05D006014 ORTHO05D007608 4.5e-39 165.2 174 60.9
BraA03t13069Z Brassica rapa HOM05D006014 ORTHO05D007608 4.5e-39 165.2 187 56.7
AT3G15190 Arabidopsis thaliana HOM05D006014 ORTHO05D007608 7.7e-39 164.5 200 57.5
A01p38830 Brassica napus HOM05D006014 ORTHO05D007608 1.7e-38 163.3 184 56.5
BraA01t03929Z Brassica rapa HOM05D006014 ORTHO05D007608 1.7e-38 163.3 184 56.5
Lsat_1_v5_gn_5_128220 Lactuca sativa HOM05D006014 ORTHO05D007608 2.9e-38 162.5 181 57.5
Carub.0003s1484 Capsella rubella HOM05D006014 ORTHO05D007608 5.0e-38 161.8 195 57.4
SalBow8G3070 Salvia bowleyana HOM05D006014 ORTHO05D007608 5.0e-38 161.8 177 58.8
Sp3g13400 Schrenkiella parvula HOM05D006014 ORTHO05D007608 5.0e-38 161.8 193 55.4
ATR0737G141 Amborella trichopoda HOM05D006014 ORTHO05D007608 1.4e-37 160.2 116 73.3
BcaB06g29543 Brassica carinata HOM05D006014 ORTHO05D007608 1.4e-37 160.2 197 53.3
BcaC01g03887 Brassica carinata HOM05D006014 ORTHO05D007608 1.9e-37 159.8 121 68.6
C03p47570 Brassica napus HOM05D006014 ORTHO05D007608 1.9e-37 159.8 121 68.6
Nitab4.5_0002330g0100 Nicotiana tabacum HOM05D006014 ORTHO05D007608 1.9e-37 159.8 194 52.6
BolC3t17032H Brassica oleracea HOM05D006014 ORTHO05D007608 2.5e-37 159.5 121 68.6
ECA234G0345 Erigeron canadensis HOM05D006014 ORTHO05D007608 4.2e-37 158.7 170 58.2
Actinidia35240 Actinidia chinensis HOM05D006014 ORTHO05D007608 7.2e-37 157.9 110 77.3
A05p34280 Brassica napus HOM05D006014 ORTHO05D007608 7.2e-37 157.9 191 53.4
BraA05t22249Z Brassica rapa HOM05D006014 ORTHO05D007608 7.2e-37 157.9 191 53.4
TWI39G1175 Tripterygium wilfordii HOM05D006014 ORTHO05D007608 7.2e-37 157.9 120 70.0
C05p52040 Brassica napus HOM05D006014 ORTHO05D007608 9.4e-37 157.5 191 53.4
Sed0026173 Sechium edule HOM05D006014 ORTHO05D007608 1.4e-35 153.7 178 57.3
Thhalv10021521m.g Eutrema salsugineum HOM05D006014 ORTHO05D007608 2.3e-35 152.9 198 54.0
HanXRQChr10g0302621 Helianthus annuus HOM05D006014 ORTHO05D007608 8.8e-35 151.0 178 53.9
Rhsim04G0022600 Rhododendron simsii HOM05D006014 ORTHO05D007608 5.7e-34 148.3 173 54.3
unitig_749.g13531 Utricularia gibba HOM05D005607 ORTHO05D008142 5.7e-34 148.3 172 58.1
Lj3g0017472 Lotus japonicus HOM05D006014 ORTHO05D007608 9.7e-34 147.5 115 73.0
Nitab4.5_0000332g0180 Nicotiana tabacum HOM05D006014 ORTHO05D007608 1.3e-33 147.1 177 55.4
SEGI_01083 Sequoiadendron giganteum HOM05D006014 ORTHO05D007608 2.6e-31 139.4 175 53.7
Mapoly0009s0159 Marchantia polymorpha HOM05D006014 ORTHO05D007608 2.9e-30 136.0 157 55.4
Lj8A154T77 Lonicera japonica HOM05D006014 ORTHO05D007608 6.3e-25 118.2 172 45.9
Pp3c24_17080 Physcomitrium patens HOM05D006014 ORTHO05D007608 6.3e-25 118.2 121 57.0
Zm00001eb360330 Zea mays HOM05D006014 ORTHO05D007608 8.2e-25 117.9 170 49.4
AagrBONN_evm.TU.Sc2ySwM_344.3794 Anthoceros agrestis HOM05D006014 ORTHO05D007608 9.1e-24 114.4 191 46.1
Pp3c20_13390 Physcomitrium patens HOM05D006014 ORTHO05D007608 2.6e-23 112.8 137 51.1
Os01g0678600 Oryza sativa ssp. japonica HOM05D006014 ORTHO05D007608 1.3e-22 110.5 194 43.3
vmacro09523 Vaccinium macrocarpon HOM05D006014 ORTHO05D007608 3.8e-22 109.0 73 69.9
CBR_g30802 Chara braunii HOM05D006014 ORTHO05D007608 7.2e-21 104.8 166 44.6
BcaC09g48477 Brassica carinata HOM05D006014 ORTHO05D007608 2.1e-20 103.2 149 52.3
SGA_v2.0_scaffold70G23686 Striga asiatica HOM05D006014 ORTHO05D007608 6.1e-20 101.7 342 31.0
Cre12.g494750 Chlamydomonas reinhardtii HOM05D006014 ORTHO05D007608 9.8e-18 94.4 125 48.8
CBR_g39307 Chara braunii HOM05D006014 ORTHO05D007608 9.1e-16 87.8 83 56.6
Gohir.A13G146850 Gossypium hirsutum HOM05D006014 ORTHO05D007608 1.5e-13 80.5 71 66.2
Cpa.g.sc131.85 Carica papaya HOM05D006014 ORTHO05D007608 2.7e-12 76.3 106 55.7
MCO10G118 Micromonas commoda HOM05D006014 ORTHO05D007608 1.2e-10 70.9 91 44.0
Dinv20203 Davidia involucrata HOM05D006014 ORTHO05D007608 4.4e-10 68.9 98 52.0
HPP92_010061 Vanilla planifolia HOM05D006014 ORTHO05D007608 9.1e-08 61.2 75 57.3
Atru.chr2.2408 Acer truncatum HOM05D006014 ORTHO05D007608 1.2e-07 60.8 50 74.0
QL11p029078 Quercus lobata HOM05D006014 ORTHO05D013998 2.0e-07 60.1 63 57.1


User provided reference genes

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