Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.011G157900 Phaseolus vulgaris HOM05D003815 ORTHO05D004580 6.8e-165 583.9 302 100.0
Glyma.06G245100 Glycine max HOM05D003815 ORTHO05D004580 1.7e-152 542.7 306 92.2
Glyma.12G151500 Glycine max HOM05D003815 ORTHO05D004580 4.3e-151 538.1 283 94.3
Lalb_Chr03g0030621 Lupinus albus HOM05D003815 ORTHO05D004580 7.1e-146 520.8 285 89.5
Lj3g0002488 Lotus japonicus HOM05D003815 ORTHO05D004580 4.6e-145 518.1 302 86.1
Lj3g0026961 Lotus japonicus HOM05D003815 ORTHO05D004580 1.9e-143 512.7 302 87.4
Lalb_Chr01g0006511 Lupinus albus HOM05D003815 ORTHO05D004580 7.4e-143 510.8 302 84.8
Eucgr.F01118 Eucalyptus grandis HOM05D003815 ORTHO05D004580 1.3e-142 510.0 298 88.6
Psat5g229040 Pisum sativum HOM05D003815 ORTHO05D004580 1.6e-142 509.6 281 89.0
Potri.011G120100 Populus trichocarpa HOM05D003815 ORTHO05D004580 3.7e-142 508.4 302 84.1
arahy.Tifrunner.gnm1.ann1.46T9HD Arachis hypogaea HOM05D003815 ORTHO05D004580 6.2e-142 507.7 287 87.1
TWI38G0676 Tripterygium wilfordii HOM05D003815 ORTHO05D004580 1.8e-141 506.1 302 83.8
Medtr1g057850 Medicago truncatula HOM05D003815 ORTHO05D004580 2.4e-141 505.8 280 87.9
QL08p021520 Quercus lobata HOM05D003815 ORTHO05D004580 6.9e-141 504.2 298 87.6
Ciclev10009061m.g Citrus clementina HOM05D003815 ORTHO05D004580 2.0e-140 502.7 285 87.4
QL05p086088 Quercus lobata HOM05D003815 ORTHO05D004580 2.0e-140 502.7 298 87.6
TPR.G454 Trifolium pratense HOM05D003815 ORTHO05D004580 2.6e-140 502.3 303 87.1
Thhalv10011698m.g Eutrema salsugineum HOM05D003815 ORTHO05D004580 3.4e-140 501.9 302 82.8
Sabra16G0263000 Salix brachista HOM05D003815 ORTHO05D004580 3.4e-140 501.9 302 82.5
BcaC01g01350 Brassica carinata HOM05D003815 ORTHO05D004580 5.8e-140 501.1 283 86.6
C03p90950 Brassica napus HOM05D003815 ORTHO05D004580 5.8e-140 501.1 283 86.6
BolC3t21419H Brassica oleracea HOM05D003815 ORTHO05D004580 5.8e-140 501.1 283 86.6
Sabra11G0104500 Salix brachista HOM05D003815 ORTHO05D004580 5.8e-140 501.1 302 82.1
Thecc.07G083700 Theobroma cacao HOM05D003815 ORTHO05D004580 7.6e-140 500.7 302 85.1
A08p01870 Brassica napus HOM05D003815 ORTHO05D004580 1.7e-139 499.6 283 86.2
MD03G1226400 Malus domestica HOM05D003815 ORTHO05D004580 2.9e-139 498.8 286 86.7
TWI38G0767 Tripterygium wilfordii HOM05D003815 ORTHO05D004580 3.8e-139 498.4 281 87.2
GSVIVG01014351001 Vitis vinifera HOM05D003815 ORTHO05D004580 3.8e-139 498.4 304 83.6
BraA08t32239Z Brassica rapa HOM05D003815 ORTHO05D004580 6.5e-139 497.7 283 85.9
Gorai.009G389800 Gossypium raimondii HOM05D003815 ORTHO05D004580 6.5e-139 497.7 302 84.4
Gohir.A04G029700 Gossypium hirsutum HOM05D003815 ORTHO05D004580 8.4e-139 497.3 285 86.3
PGR083G0800 Punica granatum HOM05D003815 ORTHO05D004580 8.4e-139 497.3 286 85.7
A05p18730 Brassica napus HOM05D003815 ORTHO05D004580 1.1e-138 496.9 285 85.6
Gohir.D05G357300 Gossypium hirsutum HOM05D003815 ORTHO05D004580 1.1e-138 496.9 302 84.4
Manes.03G110800 Manihot esculenta HOM05D003815 ORTHO05D004580 1.4e-138 496.5 281 87.2
Cfa020596 Carpinus fangiana HOM05D003815 ORTHO05D004580 2.5e-138 495.7 302 85.8
MD11G1244700 Malus domestica HOM05D003815 ORTHO05D004580 3.2e-138 495.4 302 82.5
Sp1g39560 Schrenkiella parvula HOM05D003815 ORTHO05D004580 5.5e-138 494.6 302 82.1
AT1G53000 Arabidopsis thaliana HOM05D003815 ORTHO05D004580 7.1e-138 494.2 285 84.6
BcaB02g10966 Brassica carinata HOM05D003815 ORTHO05D004580 7.1e-138 494.2 302 81.8
FAN16G0735 Fragaria x ananassa HOM05D003815 ORTHO05D004580 7.1e-138 494.2 300 84.7
BcaB04g17128 Brassica carinata HOM05D003815 ORTHO05D004580 9.3e-138 493.8 283 84.8
Duzib170G0119 Durio zibethinus HOM05D003815 ORTHO05D004580 9.3e-138 493.8 282 86.2
FAN11G0414 Fragaria x ananassa HOM05D003815 ORTHO05D004580 1.2e-137 493.4 283 85.2
AL1G61340 Arabidopsis lyrata HOM05D003815 ORTHO05D004580 1.6e-137 493.0 302 81.5
RcHm_v2.0_Chr5g0033991 Rosa chinensis HOM05D003815 ORTHO05D004580 1.6e-137 493.0 302 83.8
Carub.0001s4215 Capsella rubella HOM05D003815 ORTHO05D004580 2.7e-137 492.3 302 81.5
Dinv04311 Davidia involucrata HOM05D003815 ORTHO05D004580 3.5e-137 491.9 304 82.2
TAR629G1246 Trochodendron aralioides HOM05D003815 ORTHO05D004580 6.0e-137 491.1 304 82.2
Nitab4.5_0001551g0080 Nicotiana tabacum HOM05D003815 ORTHO05D004580 7.9e-137 490.7 280 84.6
Prupe.4G183000 Prunus persica HOM05D003815 ORTHO05D004580 7.9e-137 490.7 302 82.8
CARHR043220 Cardamine hirsuta HOM05D003815 ORTHO05D004580 1.0e-136 490.3 280 85.0
Atru.chr2.2652 Acer truncatum HOM05D003815 ORTHO05D004580 1.3e-136 490.0 284 85.2
Nn1g06558 Nelumbo nucifera HOM05D003815 ORTHO05D004580 1.8e-136 489.6 289 84.4
Nitab4.5_0002383g0120 Nicotiana tabacum HOM05D003815 ORTHO05D004580 1.8e-136 489.6 280 84.3
THA.LOC104818073 Tarenaya hassleriana HOM05D003815 ORTHO05D004580 1.8e-136 489.6 302 80.5
C06p14350 Brassica napus HOM05D003815 ORTHO05D004580 3.0e-136 488.8 296 83.1
PGR004G1265 Punica granatum HOM05D003815 ORTHO05D004580 3.9e-136 488.4 283 84.5
CAN.G162.63 Capsicum annuum HOM05D003815 ORTHO05D004580 6.7e-136 487.6 280 83.9
PGSC0003DMG400025035 Solanum tuberosum HOM05D003815 ORTHO05D004580 6.7e-136 487.6 302 80.5
Nitab4.5_0000207g0160 Nicotiana tabacum HOM05D003815 ORTHO05D004580 1.1e-135 486.9 302 79.5
Potri.001G400900 Populus trichocarpa HOM05D003815 ORTHO05D004580 1.5e-135 486.5 284 84.2
Nn1g04083 Nelumbo nucifera HOM05D003815 ORTHO05D004580 1.9e-135 486.1 287 83.6
CSS0007181 Camellia sinensis var. sinensis HOM05D003815 ORTHO05D004580 2.5e-135 485.7 288 82.6
Aa31LG10G2090 Aethionema arabicum HOM05D003815 ORTHO05D004580 3.3e-135 485.3 302 80.8
Sc07g0002580 Simmondsia chinensis HOM05D003815 ORTHO05D004580 3.3e-135 485.3 300 82.7
BraA05t20769Z Brassica rapa HOM05D003815 ORTHO05D004580 5.7e-135 484.6 277 85.2
Peaxi162Scf00027g02616 Petunia axillaris HOM05D003815 ORTHO05D004580 5.7e-135 484.6 302 81.5
Nitab4.5_0003688g0100 Nicotiana tabacum HOM05D003815 ORTHO05D004580 7.4e-135 484.2 279 83.5
CSS0031480 Camellia sinensis var. sinensis HOM05D003815 ORTHO05D004580 9.6e-135 483.8 301 82.1
COL.COLO4_09397 Corchorus olitorius HOM05D003815 ORTHO05D004580 9.6e-135 483.8 275 87.6
Sopen10g002890 Solanum pennellii HOM05D003815 ORTHO05D004580 9.6e-135 483.8 280 83.9
vmacro11847 Vaccinium macrocarpon HOM05D003815 ORTHO05D004580 9.6e-135 483.8 304 81.9
DCAR_014380 Daucus carota HOM05D003815 ORTHO05D004580 2.8e-134 482.3 285 83.5
FAN21G2274 Fragaria x ananassa HOM05D003815 ORTHO05D004580 6.2e-134 481.1 282 84.8
Solyc10g006980.3 Solanum lycopersicum HOM05D003815 ORTHO05D004580 8.2e-134 480.7 282 83.7
PSO541G6182 Papaver somniferum HOM05D003815 ORTHO05D004580 1.4e-133 479.9 286 82.9
Aqoxy1G02432 Aquilegia oxysepala HOM05D003815 ORTHO05D004580 2.4e-133 479.2 283 83.0
MSTRG.15225 Avicennia marina HOM05D003815 ORTHO05D004580 4.1e-133 478.4 302 78.5
CsaV3_3G006290 Cucumis sativus L. HOM05D003815 ORTHO05D004580 4.1e-133 478.4 302 79.5
Migut.M00813 Erythranthe guttata HOM05D003815 ORTHO05D004580 4.1e-133 478.4 280 82.5
MELO3C016515.2 Cucumis melo HOM05D003815 ORTHO05D004580 5.3e-133 478.0 302 79.8
PSO675G7971 Papaver somniferum HOM05D003815 ORTHO05D004580 5.3e-133 478.0 286 82.5
arahy.Tifrunner.gnm1.ann1.NKF69P Arachis hypogaea HOM05D003815 ORTHO05D004580 1.5e-132 476.5 287 82.9
Oeu005415.1 Olea europaea HOM05D003815 ORTHO05D004580 1.3e-131 473.4 287 81.5
EL10Ac4g08152 Beta vulgaris HOM05D003815 ORTHO05D004580 2.9e-131 472.2 304 77.6
SGA_v2.0_scaffold73G24269 Striga asiatica HOM05D003815 ORTHO05D004580 6.5e-131 471.1 280 82.1
MBI07_g32649_MAGBIO Magnolia biondii HOM05D003815 ORTHO05D004580 1.4e-130 469.9 314 77.4
GSVIVG01005203001 Vitis vinifera HOM05D003815 ORTHO05D004580 5.5e-130 468.0 282 82.6
ATR0605G309 Amborella trichopoda HOM05D003815 ORTHO05D004580 9.3e-130 467.2 282 82.6
ECA238G0528 Erigeron canadensis HOM05D003815 ORTHO05D004580 9.3e-130 467.2 282 81.2
CDE10G1101 Ceratophyllum demersum HOM05D003815 ORTHO05D004580 2.1e-129 466.1 282 82.3
Cfa000456 Carpinus fangiana HOM05D003815 ORTHO05D004580 1.0e-128 463.8 304 78.0
Sed0012787 Sechium edule HOM05D003815 ORTHO05D004580 1.3e-128 463.4 302 78.5
Actinidia01882 Actinidia chinensis HOM05D003815 ORTHO05D004580 1.8e-128 463.0 285 81.8
Cc05_g12120 Coffea canephora HOM05D003815 ORTHO05D004580 3.0e-128 462.2 280 82.5
AUR62029379 Chenopodium quinoa HOM05D003815 ORTHO05D004580 1.1e-127 460.3 304 76.6
HanXRQChr11g0328431 Helianthus annuus HOM05D003815 ORTHO05D004580 1.9e-127 459.5 303 77.6
Hund02213 Selenicereus undatus HOM05D003815 ORTHO05D004580 5.7e-127 458.0 282 79.8
QL05p040244 Quercus lobata HOM05D003815 ORTHO05D004580 7.4e-127 457.6 286 80.8
CiPaw.09G059900 Carya illinoinensis HOM05D003815 ORTHO05D004580 9.7e-127 457.2 281 80.8
Ah.06g184010 Amaranthus hybridus HOM05D003815 ORTHO05D004580 1.3e-126 456.8 300 77.0
Lsat_1_v5_gn_7_21261 Lactuca sativa HOM05D003815 ORTHO05D004580 1.3e-126 456.8 284 81.7
CAN.G1110.56 Capsicum annuum HOM05D003815 ORTHO05D004580 4.8e-126 454.9 265 84.2
Lsat_1_v5_gn_7_105160 Lactuca sativa HOM05D003815 ORTHO05D004580 4.8e-126 454.9 280 78.9
Duzib213G0989 Durio zibethinus HOM05D003815 ORTHO05D004580 6.3e-126 454.5 282 82.3
ClCG10G006920 Citrullus lanatus HOM05D003815 ORTHO05D004580 8.2e-126 454.1 315 75.6
unitig_899.g15563 Utricularia gibba HOM05D003815 ORTHO05D004580 8.2e-126 454.1 303 74.6
HPP92_021319 Vanilla planifolia HOM05D003815 ORTHO05D004580 5.3e-125 451.4 291 78.0
Peaxi162Scf00069g01341 Petunia axillaris HOM05D003815 ORTHO05D004580 6.9e-125 451.1 278 79.9
RcHm_v2.0_Chr5g0008351 Rosa chinensis HOM05D003815 ORTHO05D004580 1.5e-124 449.9 287 79.8
Lj1A1206T62 Lonicera japonica HOM05D003815 ORTHO05D004580 3.8e-123 445.3 302 75.2
SEGI_36185 Sequoiadendron giganteum HOM05D003815 ORTHO05D004580 3.8e-123 445.3 283 79.2
Haze_09417 Corylus avellana HOM05D003815 ORTHO05D004580 2.5e-122 442.6 384 66.1
FAN25G2093 Fragaria x ananassa HOM05D003815 ORTHO05D004580 2.7e-121 439.1 254 84.6
SalBow8G0761 Salvia bowleyana HOM05D003815 ORTHO05D004580 1.8e-120 436.4 276 78.3
Lj8A54T73 Lonicera japonica HOM05D003815 ORTHO05D004580 3.0e-120 435.6 310 72.9
Actinidia09679 Actinidia chinensis HOM05D003815 ORTHO05D004580 2.5e-119 432.6 274 79.6
AUR62034260 Chenopodium quinoa HOM05D003815 ORTHO05D004580 3.3e-119 432.2 282 77.0
Zm00001eb343610 Zea mays HOM05D003815 ORTHO05D004580 3.3e-119 432.2 301 72.8
Os05g0561500 Oryza sativa ssp. japonica HOM05D003815 ORTHO05D004580 2.2e-118 429.5 277 76.5
BcaC08g44025 Brassica carinata HOM05D003815 ORTHO05D004580 1.2e-116 423.7 276 77.2
SGA_v2.0_scaffold34G13823 Striga asiatica HOM05D003815 ORTHO05D004580 1.0e-112 410.6 245 81.2
Haze_06461 Corylus avellana HOM05D003815 ORTHO05D004580 8.8e-112 407.5 280 75.0
Ca_12190_v3 Cicer arietinum L. HOM05D003815 ORTHO05D004580 1.5e-111 406.8 218 90.4
Ca_30578_v3 Cicer arietinum L. HOM05D003815 ORTHO05D004580 1.5e-111 406.8 218 90.4
Prupe.4G047000 Prunus persica HOM05D003815 ORTHO05D004580 2.6e-111 406.0 271 77.1
CiPaw.11G168500 Carya illinoinensis HOM05D003815 ORTHO05D004580 7.4e-111 404.4 221 89.1
Pp3c7_2170 Physcomitrium patens HOM05D003815 ORTHO05D004580 3.1e-109 399.1 287 67.6
Rhsim06G0197600 Rhododendron simsii HOM05D003815 ORTHO05D004580 5.3e-109 398.3 221 86.9
AagrBONN_evm.TU.Sc2ySwM_344.3202 Anthoceros agrestis HOM05D003815 ORTHO05D004580 1.3e-107 393.7 250 75.6
SMO196G0043 Selaginella moellendorffii HOM05D003815 ORTHO05D004580 1.5e-106 390.2 251 75.7
FvH4_3g20180 Fragaria vesca HOM05D003815 ORTHO05D004580 1.5e-103 380.2 221 84.2
Mapoly0026s0027 Marchantia polymorpha HOM05D003815 ORTHO05D004580 4.4e-103 378.6 272 67.6
CBR_g31446 Chara braunii HOM05D003815 ORTHO05D004580 3.1e-101 372.5 253 70.4
Dinv40557 Davidia involucrata HOM05D003815 ORTHO05D004580 2.9e-99 365.9 200 89.0
Actinidia12813 Actinidia chinensis HOM05D003815 ORTHO05D004580 1.0e-96 357.5 309 63.8
PGSC0003DMG402012419 Solanum tuberosum HOM05D003815 ORTHO05D004580 8.3e-94 347.8 215 80.5
Cpa.g.sc80.53 Carica papaya HOM05D003815 ORTHO05D004580 1.3e-91 340.5 182 90.7
Duzib064G0003 Durio zibethinus HOM05D003815 ORTHO05D004580 8.0e-89 331.3 182 89.6
Oeu060549.1 Olea europaea HOM05D003815 ORTHO05D004580 3.4e-87 325.9 208 77.9
Duzib064G0004 Durio zibethinus HOM05D003815 ORTHO05D004580 6.1e-81 305.1 174 86.2
Eucgr.F01114 Eucalyptus grandis HOM05D003815 ORTHO05D004580 3.7e-78 295.8 221 73.8
PSO017G1411 Papaver somniferum HOM05D003815 ORTHO05D004580 1.8e-77 293.5 186 78.5
Lj3g0013472 Lotus japonicus HOM05D003815 ORTHO05D004580 1.6e-73 280.4 152 89.5
AagrBONN_evm.TU.Sc2ySwM_340.276 Anthoceros agrestis HOM05D003815 ORTHO05D004580 2.5e-66 256.5 194 67.5
ATR0730G188 Amborella trichopoda HOM05D003815 ORTHO05D004580 1.1e-61 241.1 146 80.8
BcaB07g33367 Brassica carinata HOM05D003815 ORTHO05D004580 3.3e-58 229.6 209 61.7
Pp3c11_23350 Physcomitrium patens HOM05D003815 ORTHO05D004580 1.6e-49 200.7 245 48.6
C07p00250 Brassica napus HOM05D003815 ORTHO05D004580 8.4e-46 188.3 119 73.1
Haze_06417 Corylus avellana HOM05D003815 ORTHO05D004580 4.2e-45 186.0 158 62.7
Haze_06421 Corylus avellana HOM05D003815 ORTHO05D004580 1.6e-44 184.1 153 66.0
Lj8A156T78 Lonicera japonica HOM05D003815 ORTHO05D004580 1.8e-40 170.6 177 55.9
BolC7t40476H Brassica oleracea HOM05D003815 ORTHO05D004580 5.8e-39 165.6 105 73.3
Hma1.2p1_0000F.1_g000160 Hydrangea macrophylla HOM05D003815 ORTHO05D004580 1.3e-35 154.5 86 83.7
BcaC06g36757 Brassica carinata HOM05D003815 ORTHO05D004580 9.6e-34 148.3 96 71.9
BolC6t36614H Brassica oleracea HOM05D003815 ORTHO05D004580 8.4e-30 135.2 84 81.0
Actinidia05634 Actinidia chinensis HOM05D003815 ORTHO05D004580 1.4e-29 134.4 88 75.0
MCO07G610 Micromonas commoda HOM05D003815 ORTHO05D004580 1.4e-29 134.4 306 33.7
Lj3g0015923 Lotus japonicus HOM05D003815 ORTHO05D004580 2.4e-29 133.7 196 44.4
CBR_g29613 Chara braunii HOM05D003815 ORTHO05D004580 1.3e-27 127.9 170 45.3
BcaC08g43686 Brassica carinata HOM05D003815 ORTHO05D004580 1.4e-24 117.9 66 87.9
BolC6t36186H Brassica oleracea HOM05D003815 ORTHO05D004580 1.4e-24 117.9 66 87.9
Ca_12192_v3 Cicer arietinum L. HOM05D003815 ORTHO05D004580 4.2e-21 106.3 62 85.5
Ca_30580_v3 Cicer arietinum L. HOM05D003815 ORTHO05D004580 4.2e-21 106.3 62 85.5
Sopen05g017440 Solanum pennellii HOM05D003815 ORTHO05D004580 2.4e-16 90.5 158 39.2
PSO017G7235 Papaver somniferum HOM05D003815 ORTHO05D004580 4.5e-15 86.3 53 75.5
Sopen05g018740 Solanum pennellii HOM05D000002 ORTHO05D000001 7.6e-15 85.5 85 54.1
Oeu044430.1 Olea europaea HOM05D003815 ORTHO05D004580 2.1e-12 77.4 79 53.2
ATR0730G237 Amborella trichopoda HOM05D003815 ORTHO05D004580 4.6e-12 76.3 66 62.1
BolC9t59438H Brassica oleracea HOM05D003815 ORTHO05D004580 6.1e-12 75.9 92 47.8
Lj8C156T6 Lonicera japonica HOM05D003815 ORTHO05D004580 3.0e-11 73.6 81 58.0
COL.COLO4_36023 Corchorus olitorius HOM05D006127 ORTHO05D161883 1.9e-10 70.9 59 61.0
C09p66180 Brassica napus HOM05D003815 ORTHO05D004580 1.6e-09 67.8 103 40.8
Solyc04g079020.4 Solanum lycopersicum HOM05D003815 ORTHO05D004580 2.2e-09 67.4 110 39.1
COL.COLO4_31682 Corchorus olitorius HOM05D000007 ORTHO05D000017 2.4e-08 63.9 43 74.4
Actinidia16545 Actinidia chinensis HOM05D003815 ORTHO05D056144 6.9e-08 62.4 57 56.1
Actinidia24031 Actinidia chinensis HOM05D003815 ORTHO05D004580 1.5e-07 61.2 34 82.4
Lj2g0024488 Lotus japonicus HOM05D003815 ORTHO05D004580 1.5e-07 61.2 38 78.9
Oeu026881.1 Olea europaea HOM05D001611 ORTHO05D001464 5.0e-06 56.2 57 49.1


User provided reference genes

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