Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.011G146700 Phaseolus vulgaris HOM05D003841 ORTHO05D004602 3.7e-166 588.2 310 100.0
VMungo1127G0850 Vigna mungo HOM05D003841 ORTHO05D004602 2.0e-143 512.7 311 87.8
Glyma.06G262900 Glycine max HOM05D003841 ORTHO05D004602 3.9e-115 418.7 319 71.5
Glyma.12G139800 Glycine max HOM05D003841 ORTHO05D004602 5.1e-107 391.7 331 67.1
arahy.Tifrunner.gnm1.ann1.GYU1HX Arachis hypogaea HOM05D003841 ORTHO05D004602 8.0e-84 314.7 329 57.8
arahy.Tifrunner.gnm1.ann1.SIF99T Arachis hypogaea HOM05D003841 ORTHO05D004602 1.8e-83 313.5 330 57.6
Ca_18832_v3 Cicer arietinum L. HOM05D003841 ORTHO05D004602 1.6e-79 300.4 324 55.9
Ca_30091_v3 Cicer arietinum L. HOM05D003841 ORTHO05D004602 1.6e-79 300.4 324 55.9
TPR.G34029 Trifolium pratense HOM05D003841 ORTHO05D004602 4.5e-79 298.9 324 55.6
Lj3g0010893 Lotus japonicus HOM05D003841 ORTHO05D004602 1.7e-78 297.0 333 56.2
Psat7g160280 Pisum sativum HOM05D003841 ORTHO05D004602 1.6e-76 290.4 324 53.7
Medtr4g081550 Medicago truncatula HOM05D003841 ORTHO05D004602 2.8e-73 279.6 323 52.6
Lalb_Chr01g0006261 Lupinus albus HOM05D003841 ORTHO05D004602 4.1e-72 275.8 323 51.4
Lalb_Chr22g0357311 Lupinus albus HOM05D003841 ORTHO05D004602 1.8e-64 250.4 332 50.0
QL08p014515 Quercus lobata HOM05D003841 ORTHO05D004602 1.1e-53 214.5 340 43.5
CiPaw.12G124700 Carya illinoinensis HOM05D003841 ORTHO05D004602 5.6e-53 212.2 321 43.9
Glyma.13G284700 Glycine max HOM05D003841 ORTHO05D004602 4.7e-52 209.1 323 48.0
Cfa020471 Carpinus fangiana HOM05D003841 ORTHO05D004602 3.4e-50 203.0 325 43.7
VMungo1027G0001 Vigna mungo HOM05D003841 ORTHO05D004602 1.8e-48 197.2 212 57.1
Dinv02831 Davidia involucrata HOM05D003841 ORTHO05D004602 2.4e-48 196.8 339 41.3
CSS0048456 Camellia sinensis var. sinensis HOM05D003841 ORTHO05D004602 7.0e-48 195.3 333 39.9
Ciclev10008955m.g Citrus clementina HOM05D003841 ORTHO05D004602 3.0e-46 189.9 328 42.7
Glyma.12G216500 Glycine max HOM05D003841 ORTHO05D004602 5.0e-46 189.1 323 44.0
EL10Ac4g08014 Beta vulgaris HOM05D003841 ORTHO05D004602 1.5e-45 187.6 319 39.8
Lj8A163G39 Lonicera japonica HOM05D003841 ORTHO05D004602 3.3e-45 186.4 333 40.2
Nitab4.5_0003052g0050 Nicotiana tabacum HOM05D003841 ORTHO05D004602 5.6e-45 185.7 331 39.3
Haze_09572 Corylus avellana HOM05D003841 ORTHO05D004602 2.1e-44 183.7 351 39.3
Peaxi162Scf01365g00027 Petunia axillaris HOM05D003841 ORTHO05D004602 3.6e-44 183.0 339 38.3
CANSAT11G1059 Cannabis sativa HOM05D003841 ORTHO05D004602 6.2e-44 182.2 324 42.3
FAN11G1553 Fragaria x ananassa HOM05D003841 ORTHO05D004602 6.2e-44 182.2 321 39.9
Prupe.4G197300 Prunus persica HOM05D003841 ORTHO05D004602 1.1e-43 181.4 328 40.9
Dinv22328 Davidia involucrata HOM05D003841 ORTHO05D004602 1.4e-43 181.0 341 39.3
Hund23360 Selenicereus undatus HOM05D003841 ORTHO05D004602 1.4e-43 181.0 325 41.2
FvH4_3g21510 Fragaria vesca HOM05D003841 ORTHO05D004602 3.1e-43 179.9 325 39.1
Gohir.A11G281600 Gossypium hirsutum HOM05D003841 ORTHO05D004602 6.8e-43 178.7 337 40.9
Lj1A861T58 Lonicera japonica HOM05D003841 ORTHO05D004602 6.8e-43 178.7 334 40.1
AUR62041149 Chenopodium quinoa HOM05D003841 ORTHO05D004602 8.9e-43 178.3 323 39.3
TAR627G0073 Trochodendron aralioides HOM05D003841 ORTHO05D004602 8.9e-43 178.3 350 40.0
Duzib213G0276 Durio zibethinus HOM05D003841 ORTHO05D004602 1.2e-42 177.9 330 41.2
AUR62029272 Chenopodium quinoa HOM05D003841 ORTHO05D004602 2.0e-42 177.2 323 39.0
Lj3g0010292 Lotus japonicus HOM05D003841 ORTHO05D004602 2.0e-42 177.2 330 41.5
FAN21G0547 Fragaria x ananassa HOM05D003841 ORTHO05D004602 4.4e-42 176.0 323 38.7
Nitab4.5_0000552g0100 Nicotiana tabacum HOM05D003841 ORTHO05D004602 4.4e-42 176.0 338 38.5
Cc05_g12980 Coffea canephora HOM05D003841 ORTHO05D004602 5.8e-42 175.6 336 42.0
TWI39G0875 Tripterygium wilfordii HOM05D003841 ORTHO05D004602 5.8e-42 175.6 335 40.6
TAR271G0005 Trochodendron aralioides HOM05D003841 ORTHO05D004602 9.8e-42 174.9 346 39.3
arahy.Tifrunner.gnm1.ann1.SKE74K Arachis hypogaea HOM05D003841 ORTHO05D004602 1.3e-41 174.5 333 40.2
Gorai.007G317200 Gossypium raimondii HOM05D003841 ORTHO05D004602 2.2e-41 173.7 337 40.1
MD11G1230100 Malus domestica HOM05D003841 ORTHO05D004602 2.9e-41 173.3 330 40.6
TAR271G0006 Trochodendron aralioides HOM05D003841 ORTHO05D004602 2.9e-41 173.3 346 38.7
MD03G1215500 Malus domestica HOM05D003841 ORTHO05D004602 4.9e-41 172.6 326 39.3
Gohir.D11G294200 Gossypium hirsutum HOM05D003841 ORTHO05D004602 6.4e-41 172.2 337 39.8
Gorai.013G165300 Gossypium raimondii HOM05D003841 ORTHO05D004602 6.4e-41 172.2 330 38.5
Gohir.D13G147500 Gossypium hirsutum HOM05D003841 ORTHO05D004602 8.3e-41 171.8 330 38.8
TWI38G0390 Tripterygium wilfordii HOM05D003841 ORTHO05D004602 1.1e-40 171.4 337 37.4
Actinidia35303 Actinidia chinensis HOM05D003841 ORTHO05D004602 1.4e-40 171.0 358 39.1
MELO3C018156.2 Cucumis melo HOM05D003841 ORTHO05D004602 2.4e-40 170.2 333 38.7
Manes.15G079400 Manihot esculenta HOM05D003841 ORTHO05D004602 2.4e-40 170.2 338 38.2
Thecc.07G059100 Theobroma cacao HOM05D003841 ORTHO05D004602 3.2e-40 169.9 337 39.2
Eucgr.F03390 Eucalyptus grandis HOM05D003841 ORTHO05D004602 4.1e-40 169.5 333 40.8
Potri.001G410100 Populus trichocarpa HOM05D003841 ORTHO05D004602 5.4e-40 169.1 332 39.5
Nn1g06911 Nelumbo nucifera HOM05D003841 ORTHO05D004602 9.2e-40 168.3 340 39.1
RhsimUnG0254800 Rhododendron simsii HOM05D003841 ORTHO05D004602 1.6e-39 167.5 337 37.1
Gohir.A13G142900 Gossypium hirsutum HOM05D003841 ORTHO05D004602 2.7e-39 166.8 330 37.3
COL.COLO4_09535 Corchorus olitorius HOM05D003841 ORTHO05D004602 6.0e-39 165.6 336 39.0
Duzib170G0031 Durio zibethinus HOM05D003841 ORTHO05D004602 1.0e-38 164.9 332 37.7
FAN16G3040 Fragaria x ananassa HOM05D003841 ORTHO05D004602 1.3e-38 164.5 322 37.9
arahy.Tifrunner.gnm1.ann1.SRRR95 Arachis hypogaea HOM05D003841 ORTHO05D004602 3.0e-38 163.3 338 40.5
Sabra16G0281100 Salix brachista HOM05D003841 ORTHO05D004602 3.9e-38 162.9 339 39.2
CSS0046033 Camellia sinensis var. sinensis HOM05D003841 ORTHO05D004602 6.6e-38 162.2 293 38.6
FAN25G3758 Fragaria x ananassa HOM05D003841 ORTHO05D004602 1.1e-37 161.4 322 38.5
Rhsim06G0189000 Rhododendron simsii HOM05D003841 ORTHO05D004602 1.1e-37 161.4 326 36.8
Rhsim06G0190700 Rhododendron simsii HOM05D003841 ORTHO05D004602 1.1e-37 161.4 326 36.8
Sopen07g032000 Solanum pennellii HOM05D003841 ORTHO05D004602 2.5e-37 160.2 342 36.8
PGSC0003DMG400019273 Solanum tuberosum HOM05D003841 ORTHO05D000515 4.3e-37 159.5 320 37.5
Solyc07g063870.3 Solanum lycopersicum HOM05D003841 ORTHO05D004602 7.3e-37 158.7 342 37.1
MSTRG.6876 Avicennia marina HOM05D003841 ORTHO05D004602 4.7e-36 156.0 325 36.3
RcHm_v2.0_Chr5g0036951 Rosa chinensis HOM05D003841 ORTHO05D004602 4.7e-36 156.0 235 44.7
Aa31LG3G10490 Aethionema arabicum HOM05D003841 ORTHO05D004602 1.1e-35 154.8 333 39.0
Sed0013156 Sechium edule HOM05D003841 ORTHO05D004602 3.1e-35 153.3 335 39.1
ClCG05G014990 Citrullus lanatus HOM05D003841 ORTHO05D004602 4.0e-35 152.9 329 38.0
Sp6g16510 Schrenkiella parvula HOM05D003841 ORTHO05D004602 4.0e-35 152.9 327 35.5
CsaV3_3G022650 Cucumis sativus L. HOM05D003841 ORTHO05D004602 5.2e-35 152.5 343 38.2
Potri.011G130000 Populus trichocarpa HOM05D003841 ORTHO05D004602 1.2e-34 151.4 333 37.8
DCAR_022502 Daucus carota HOM05D003841 ORTHO05D004602 4.4e-34 149.4 326 38.7
Ah.06g183230 Amaranthus hybridus HOM05D003841 ORTHO05D004602 5.8e-34 149.1 316 36.4
Oeu005438.1 Olea europaea HOM05D003841 ORTHO05D004602 7.5e-34 148.7 335 37.9
Aqoxy1G03844 Aquilegia oxysepala HOM05D003841 ORTHO05D004602 3.7e-33 146.4 346 35.8
HanXRQChr11g0332121 Helianthus annuus HOM05D003841 ORTHO05D004602 3.7e-33 146.4 339 35.7
Sc03g0009430 Simmondsia chinensis HOM05D003841 ORTHO05D004602 3.7e-33 146.4 323 34.1
vmacro11787 Vaccinium macrocarpon HOM05D003841 ORTHO05D004602 8.3e-33 145.2 354 34.2
GSVIVG01014549001 Vitis vinifera HOM05D003841 ORTHO05D004602 8.3e-33 145.2 213 46.0
Hund02157 Selenicereus undatus HOM05D003841 ORTHO05D004602 4.1e-32 142.9 316 37.3
AT5G54540 Arabidopsis thaliana HOM05D003841 ORTHO05D004602 5.4e-32 142.5 327 35.5
Lsat_1_v5_gn_7_107821 Lactuca sativa HOM05D003841 ORTHO05D004602 1.2e-31 141.4 321 35.8
AL8G29910 Arabidopsis lyrata HOM05D003841 ORTHO05D004602 2.7e-31 140.2 324 35.2
THA.LOC104799894 Tarenaya hassleriana HOM05D003841 ORTHO05D004602 2.7e-31 140.2 334 37.1
Carub.0008s1482 Capsella rubella HOM05D003841 ORTHO05D004602 3.5e-31 139.8 320 35.6
Thhalv10014255m.g Eutrema salsugineum HOM05D003841 ORTHO05D004602 6.0e-31 139.0 324 35.5
Zm00001eb171810 Zea mays HOM05D003841 ORTHO05D004602 1.0e-30 138.3 340 35.6
CARHR267820 Cardamine hirsuta HOM05D003841 ORTHO05D004602 1.3e-30 137.9 328 35.7
DCAR_010006 Daucus carota HOM05D003841 ORTHO05D004602 2.3e-30 137.1 311 33.4
Migut.H01878 Erythranthe guttata HOM05D003841 ORTHO05D004602 6.6e-30 135.6 332 35.5
BcaB08g35813 Brassica carinata HOM05D003841 ORTHO05D004602 1.9e-29 134.0 319 34.8
Actinidia10692 Actinidia chinensis HOM05D003841 ORTHO05D004602 2.5e-29 133.7 287 35.5
SGA_v2.0_scaffold70G23570 Striga asiatica HOM05D003841 ORTHO05D004602 4.3e-29 132.9 320 37.2
Os08g0179900 Oryza sativa ssp. japonica HOM05D003841 ORTHO05D004602 7.3e-29 132.1 264 37.1
PSO675G5063 Papaver somniferum HOM05D003841 ORTHO05D004602 9.5e-29 131.7 347 34.9
Zm00001eb413050 Zea mays HOM05D003841 ORTHO05D004602 1.6e-28 131.0 341 35.2
vmacro09595 Vaccinium macrocarpon HOM05D003841 ORTHO05D004602 3.6e-28 129.8 471 28.5
HPP92_004148 Vanilla planifolia HOM05D003841 ORTHO05D004602 3.6e-28 129.8 329 34.0
ECA236G3199 Erigeron canadensis HOM05D003841 ORTHO05D004602 4.7e-28 129.4 332 34.0
Oeu052335.1 Olea europaea HOM05D003841 ORTHO05D004602 4.7e-28 129.4 337 34.4
TAR623G1765 Trochodendron aralioides HOM05D003841 ORTHO05D004602 4.7e-28 129.4 340 33.5
MSTRG.14400 Avicennia marina HOM05D003841 ORTHO05D004602 8.1e-28 128.6 356 33.7
SGA_v2.0_scaffold9G05000 Striga asiatica HOM05D003841 ORTHO05D004602 1.1e-27 128.3 324 34.9
C02p16910 Brassica napus HOM05D003841 ORTHO05D004602 3.1e-27 126.7 324 33.0
Sabra11G0117400 Salix brachista HOM05D003841 ORTHO05D004602 5.2e-27 125.9 269 37.2
BraA10t43276Z Brassica rapa HOM05D003841 ORTHO05D004602 6.8e-27 125.6 319 34.8
A10p11770 Brassica napus HOM05D003841 ORTHO05D004602 8.9e-27 125.2 319 35.1
Migut.M01831 Erythranthe guttata HOM05D003841 ORTHO05D004602 8.9e-27 125.2 325 34.5
A02p10210 Brassica napus HOM05D003841 ORTHO05D004602 1.5e-26 124.4 322 32.9
PSO541G4862 Papaver somniferum HOM05D003841 ORTHO05D004602 1.5e-26 124.4 349 33.5
MBI18_g38396_MAGBIO Magnolia biondii HOM05D003841 ORTHO05D004602 2.6e-26 123.6 331 33.8
SalBow7G4379 Salvia bowleyana HOM05D003841 ORTHO05D004602 5.8e-26 122.5 325 31.1
BcaC04g20329 Brassica carinata HOM05D003841 ORTHO05D004602 3.8e-25 119.8 323 32.5
C09p44880 Brassica napus HOM05D003841 ORTHO05D004602 1.9e-24 117.5 323 32.5
DCAR_008683 Daucus carota HOM05D003841 ORTHO05D004602 5.4e-24 115.9 323 32.5
Actinidia05162 Actinidia chinensis HOM05D003841 ORTHO05D004602 7.1e-24 115.5 353 31.2
PSO675G0068 Papaver somniferum HOM05D003841 ORTHO05D004602 2.1e-23 114.0 324 31.5
BolC9t57359H Brassica oleracea HOM05D003841 ORTHO05D004602 2.7e-23 113.6 332 32.8
ATR0804G047 Amborella trichopoda HOM05D003841 ORTHO05D004602 5.1e-22 109.4 341 29.3
BraA02t06092Z Brassica rapa HOM05D003841 ORTHO05D004602 1.9e-21 107.5 321 32.1
CDE05G3666 Ceratophyllum demersum HOM05D003841 ORTHO05D004602 1.9e-21 107.5 330 29.1
HPP92_005894 Vanilla planifolia HOM05D003841 ORTHO05D004602 2.5e-21 107.1 323 29.1
PSO541G5517 Papaver somniferum HOM05D003841 ORTHO05D004602 3.3e-21 106.7 233 35.2
Cfa021072 Carpinus fangiana HOM05D003841 ORTHO05D004602 3.6e-20 103.2 116 51.7
Sed0016497 Sechium edule HOM05D003841 ORTHO05D004602 6.2e-20 102.4 214 36.9
ClCG10G006140 Citrullus lanatus HOM05D003841 ORTHO05D004602 1.8e-19 100.9 321 33.0
Gorai.007G317300 Gossypium raimondii HOM05D003841 ORTHO05D004602 2.0e-18 97.4 282 33.3
Gohir.D11G294233 Gossypium hirsutum HOM05D003841 ORTHO05D004602 3.4e-18 96.7 377 30.0
unitig_746.g26819 Utricularia gibba HOM05D003841 ORTHO05D004602 2.2e-17 94.0 320 29.1
BcaB05g22143 Brassica carinata HOM05D003841 ORTHO05D004602 3.8e-17 93.2 309 30.1
CsaV3_3G005690 Cucumis sativus L. HOM05D003841 ORTHO05D004602 6.4e-17 92.4 341 29.6
unitig_899.g15555 Utricularia gibba HOM05D003841 ORTHO05D004602 6.4e-17 92.4 328 30.2
CAN.G64.40 Capsicum annuum HOM05D003841 ORTHO05D004602 1.9e-16 90.9 121 42.1
PSO339G6399 Papaver somniferum HOM05D003841 ORTHO05D004602 3.2e-16 90.1 354 28.0
PSO384G0968 Papaver somniferum HOM05D003841 ORTHO05D004602 4.2e-16 89.7 352 28.1
Sed0013484 Sechium edule HOM05D003841 ORTHO05D004602 4.2e-16 89.7 264 30.3
Gohir.A11G281650 Gossypium hirsutum HOM05D003841 ORTHO05D004602 5.4e-16 89.4 278 32.0
MELO3C016604.2 Cucumis melo HOM05D003841 ORTHO05D004602 4.6e-15 86.3 341 28.7
Os03g0201000 Oryza sativa ssp. japonica HOM05D003841 ORTHO05D049799 1.0e-14 85.1 361 28.0
CDE05G3612 Ceratophyllum demersum HOM05D003841 ORTHO05D004602 1.3e-14 84.7 326 29.1
Cpa.g.sc80.126 Carica papaya HOM05D003841 ORTHO05D004602 2.3e-14 84.0 185 43.2
Lsat_1_v5_gn_2_59361 Lactuca sativa HOM05D003841 ORTHO05D004602 5.6e-13 79.3 170 34.7
Phvul.005G089400 Phaseolus vulgaris HOM05D003841 ORTHO05D004602 4.8e-12 76.3 108 42.6
CAN.G1160.11 Capsicum annuum HOM05D003841 ORTHO05D004602 1.8e-11 74.3 217 29.0
SEGI_16254 Sequoiadendron giganteum HOM05D002766 ORTHO05D002809 1.2e-10 71.6 345 27.5
PGR031G0981 Punica granatum HOM05D003841 ORTHO05D004602 1.5e-10 71.2 149 32.9
SMO367G1113 Selaginella moellendorffii HOM05D002766 ORTHO05D002809 2.9e-09 67.0 333 28.2
SEGI_39337 Sequoiadendron giganteum HOM05D002766 ORTHO05D002809 6.4e-09 65.9 270 28.9
VMungo1080G1564 Vigna mungo HOM05D003841 ORTHO05D004602 1.9e-08 64.3 166 35.5
Oeu052334.1 Olea europaea HOM05D003841 ORTHO05D004602 4.2e-08 63.2 235 26.4
Sabra16G0276700 Salix brachista HOM05D006433 ORTHO05D005382 4.2e-08 63.2 125 40.0
ECA238G1863 Erigeron canadensis HOM05D002766 ORTHO05D002809 5.4e-08 62.8 229 25.8
Oeu052338.1 Olea europaea HOM05D003841 ORTHO05D004602 1.2e-07 61.6 309 28.2
Prupe.5G070000 Prunus persica HOM05D003841 ORTHO05D004602 1.6e-07 61.2 130 39.2
Ah.04g165190 Amaranthus hybridus HOM05D003841 ORTHO05D004602 2.1e-07 60.8 198 32.3
Cpa.g.c47761 Carica papaya HOM05D003841 ORTHO05D004602 2.1e-07 60.8 121 45.5
CAN.G952.3 Capsicum annuum HOM05D003841 ORTHO05D004602 6.0e-07 59.3 195 27.7
Cfa012925 Carpinus fangiana HOM05D002766 ORTHO05D002809 1.0e-06 58.5 242 26.0
VMungo0720G3086 Vigna mungo HOM05D003841 ORTHO05D004602 1.0e-06 58.5 70 54.3
CAN.G22.51 Capsicum annuum HOM05D000121 ORTHO05D000102 1.3e-06 58.2 133 33.1
Atru.chr1.819 Acer truncatum HOM05D002766 ORTHO05D002809 3.0e-06 57.0 291 24.4
Aa31LG7G10410 Aethionema arabicum HOM05D002766 ORTHO05D002809 3.9e-06 56.6 351 25.9
Lj1A977T69 Lonicera japonica HOM05D002766 ORTHO05D002809 5.1e-06 56.2 263 24.7
PGSC0003DMG400018857 Solanum tuberosum HOM05D002766 ORTHO05D002809 6.7e-06 55.8 333 22.2


User provided reference genes

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