Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.011G140701 Phaseolus vulgaris HOM05D003993 ORTHO05D005336 0.0e+00 1944.1 969 100.0
Glyma.12G135700 Glycine max HOM05D003993 ORTHO05D005336 0.0e+00 1555.8 926 83.4
Lalb_Chr19g0134741 Lupinus albus HOM05D003993 ORTHO05D005336 0.0e+00 1456.0 926 77.5
Lj3g0021702 Lotus japonicus HOM05D003993 ORTHO05D005336 0.0e+00 1455.3 926 78.1
arahy.Tifrunner.gnm1.ann1.YETR49 Arachis hypogaea HOM05D003993 ORTHO05D005336 0.0e+00 1397.1 932 75.8
Glyma.13G287100 Glycine max HOM05D003993 ORTHO05D005336 0.0e+00 1395.9 927 75.4
Phvul.005G091400 Phaseolus vulgaris HOM05D003993 ORTHO05D005336 0.0e+00 1392.5 927 74.3
Medtr4g081300 Medicago truncatula HOM05D003993 ORTHO05D005336 0.0e+00 1390.9 909 76.1
Glyma.12G214500 Glycine max HOM05D003993 ORTHO05D005336 0.0e+00 1385.9 927 74.9
VMungo1080G1710 Vigna mungo HOM05D003993 ORTHO05D005336 0.0e+00 1381.7 927 74.3
Psat7g122440 Pisum sativum HOM05D003993 ORTHO05D005336 0.0e+00 1377.8 929 75.2
arahy.Tifrunner.gnm1.ann1.C7DQ5B Arachis hypogaea HOM05D003993 ORTHO05D005336 0.0e+00 1369.4 911 75.6
Psat5g251760 Pisum sativum HOM05D003993 ORTHO05D005336 0.0e+00 1361.3 927 73.2
Ca_01754_v3 Cicer arietinum L. HOM05D003993 ORTHO05D005336 0.0e+00 1357.4 930 72.5
Lalb_Chr14g0366101 Lupinus albus HOM05D003993 ORTHO05D005336 0.0e+00 1347.8 928 72.0
Medtr2g082910 Medicago truncatula HOM05D003993 ORTHO05D005336 0.0e+00 1335.9 927 72.3
Lj3g0011163 Lotus japonicus HOM05D003993 ORTHO05D005336 0.0e+00 1331.6 928 72.7
arahy.Tifrunner.gnm1.ann1.M0TH05 Arachis hypogaea HOM05D003993 ORTHO05D005336 0.0e+00 1312.4 928 71.1
arahy.Tifrunner.gnm1.ann1.D8T6NU Arachis hypogaea HOM05D003993 ORTHO05D005336 0.0e+00 1286.9 897 72.7
CiPaw.11G183500 Carya illinoinensis HOM05D003993 ORTHO05D005336 0.0e+00 1278.8 927 68.9
Cfa020417 Carpinus fangiana HOM05D003993 ORTHO05D005336 0.0e+00 1276.9 927 67.7
QL08p013350 Quercus lobata HOM05D003993 ORTHO05D005336 0.0e+00 1268.8 926 67.8
Prupe.4G202100 Prunus persica HOM05D003993 ORTHO05D005336 0.0e+00 1266.9 927 67.1
MD11G1227200 Malus domestica HOM05D003993 ORTHO05D005336 0.0e+00 1254.2 927 66.3
Thecc.07G054200 Theobroma cacao HOM05D003993 ORTHO05D005336 0.0e+00 1240.7 926 67.4
Haze_09608 Corylus avellana HOM05D003993 ORTHO05D005336 0.0e+00 1234.2 927 66.1
Manes.15G076600 Manihot esculenta HOM05D003993 ORTHO05D005336 0.0e+00 1233.4 926 65.8
CANSAT11G1844 Cannabis sativa HOM05D003993 ORTHO05D005336 0.0e+00 1230.3 927 65.5
MD03G1211800 Malus domestica HOM05D003993 ORTHO05D005336 0.0e+00 1230.3 927 65.4
Dinv22306 Davidia involucrata HOM05D003993 ORTHO05D005336 0.0e+00 1229.9 927 66.2
Gohir.A01G074400 Gossypium hirsutum HOM05D003993 ORTHO05D005336 0.0e+00 1226.8 930 65.2
Sabra11G0119600 Salix brachista HOM05D003993 ORTHO05D005336 0.0e+00 1221.8 926 65.7
TAR624G0674 Trochodendron aralioides HOM05D003993 ORTHO05D005336 0.0e+00 1219.9 927 65.4
Potri.011G132800 Populus trichocarpa HOM05D003993 ORTHO05D005336 0.0e+00 1219.5 927 66.0
Gohir.D01G060900 Gossypium hirsutum HOM05D003993 ORTHO05D005336 0.0e+00 1218.4 926 65.0
TWI38G0109 Tripterygium wilfordii HOM05D003993 ORTHO05D005336 0.0e+00 1218.4 927 65.2
arahy.Tifrunner.gnm1.ann1.P0I1SB Arachis hypogaea HOM05D003993 ORTHO05D005336 0.0e+00 1217.2 817 74.5
Gorai.002G082300 Gossypium raimondii HOM05D003993 ORTHO05D005336 0.0e+00 1215.3 926 64.9
CSS0014856 Camellia sinensis var. sinensis HOM05D003993 ORTHO05D005336 0.0e+00 1214.1 930 65.1
Potri.001G417200 Populus trichocarpa HOM05D003993 ORTHO05D005336 0.0e+00 1204.5 927 65.0
Duzib170G0292 Durio zibethinus HOM05D003993 ORTHO05D005336 0.0e+00 1203.3 981 62.1
TWI39G1096 Tripterygium wilfordii HOM05D003993 ORTHO05D005336 0.0e+00 1203.0 927 64.7
RcHm_v2.0_Chr5g0037331 Rosa chinensis HOM05D003993 ORTHO05D005336 0.0e+00 1190.6 929 64.8
Actinidia09963 Actinidia chinensis HOM05D003993 ORTHO05D005336 0.0e+00 1189.1 930 64.3
Nn1g03663 Nelumbo nucifera HOM05D003993 ORTHO05D005336 0.0e+00 1188.3 927 64.1
Ciclev10007272m.g Citrus clementina HOM05D003993 ORTHO05D005336 0.0e+00 1186.4 926 64.0
FvH4_3g21780 Fragaria vesca HOM05D003993 ORTHO05D005336 0.0e+00 1169.8 929 63.8
FAN25G1663 Fragaria x ananassa HOM05D003993 ORTHO05D005336 0.0e+00 1169.8 938 63.4
Atru.chr2.3206 Acer truncatum HOM05D003993 ORTHO05D005336 0.0e+00 1169.1 929 62.5
CsaV3_3G005470 Cucumis sativus L. HOM05D003993 ORTHO05D005336 0.0e+00 1164.1 924 63.1
CSS0003157 Camellia sinensis var. sinensis HOM05D003993 ORTHO05D005336 0.0e+00 1163.7 893 64.8
GSVIVG01014604001 Vitis vinifera HOM05D003993 ORTHO05D005336 0.0e+00 1163.7 927 64.1
MELO3C025431.2 Cucumis melo HOM05D003993 ORTHO05D005336 0.0e+00 1163.3 924 63.0
ClCG10G005790 Citrullus lanatus HOM05D003993 ORTHO05D005336 0.0e+00 1162.1 926 63.0
Eucgr.F03424 Eucalyptus grandis HOM05D003993 ORTHO05D005336 0.0e+00 1154.4 929 62.1
Migut.H01858 Erythranthe guttata HOM05D003993 ORTHO05D005336 0.0e+00 1151.3 935 63.0
Lj8C165T11 Lonicera japonica HOM05D003993 ORTHO05D005336 0.0e+00 1149.4 938 62.8
Aqoxy4G02086 Aquilegia oxysepala HOM05D003993 ORTHO05D005336 0.0e+00 1148.3 925 62.4
Sed0012816 Sechium edule HOM05D003993 ORTHO05D005336 0.0e+00 1148.3 927 62.2
FAN11G2565 Fragaria x ananassa HOM05D003993 ORTHO05D005336 0.0e+00 1147.1 943 62.4
PSO675G0751 Papaver somniferum HOM05D003993 ORTHO05D005336 0.0e+00 1140.9 928 62.4
FAN16G1112 Fragaria x ananassa HOM05D003993 ORTHO05D005336 0.0e+00 1140.6 951 61.8
TAR626G1606 Trochodendron aralioides HOM05D003993 ORTHO05D005336 0.0e+00 1132.9 926 62.3
PSO541G2178 Papaver somniferum HOM05D003993 ORTHO05D005336 0.0e+00 1132.1 928 62.2
Oeu032440.1 Olea europaea HOM05D003993 ORTHO05D005336 0.0e+00 1123.2 928 62.1
CAN.G337.149 Capsicum annuum HOM05D003993 ORTHO05D005336 0.0e+00 1121.7 933 62.0
COL.COLO4_09564 Corchorus olitorius HOM05D003993 ORTHO05D005336 0.0e+00 1117.8 926 62.1
Sopen07g032220 Solanum pennellii HOM05D003993 ORTHO05D005336 0.0e+00 1117.8 928 61.5
MBI18_g30688_MAGBIO Magnolia biondii HOM05D003993 ORTHO05D005336 0.0e+00 1117.4 878 62.8
HanXRQChr11g0332991 Helianthus annuus HOM05D003993 ORTHO05D005336 0.0e+00 1117.1 927 61.2
Gohir.A04G022400 Gossypium hirsutum HOM05D003993 ORTHO05D005336 0.0e+00 1114.4 927 59.1
Cc05_g13220 Coffea canephora HOM05D003993 ORTHO05D005336 0.0e+00 1114.0 929 60.8
Gorai.009G427300 Gossypium raimondii HOM05D003993 ORTHO05D005336 0.0e+00 1113.6 927 59.4
Gohir.D05G365000 Gossypium hirsutum HOM05D003993 ORTHO05D005336 0.0e+00 1109.4 927 59.1
PGR031G1242 Punica granatum HOM05D003993 ORTHO05D005336 0.0e+00 1102.4 930 60.9
THA.LOC104817894 Tarenaya hassleriana HOM05D003993 ORTHO05D005336 0.0e+00 1098.6 927 60.5
CARHR096540 Cardamine hirsuta HOM05D003993 ORTHO05D005336 0.0e+00 1098.2 928 59.3
ECA236G0263 Erigeron canadensis HOM05D003993 ORTHO05D005336 0.0e+00 1096.6 926 59.7
Cpa.g.sc97.71 Carica papaya HOM05D003993 ORTHO05D005336 0.0e+00 1096.3 927 59.7
SalBow7G3755 Salvia bowleyana HOM05D003993 ORTHO05D005336 0.0e+00 1095.5 956 59.2
Thhalv10019934m.g Eutrema salsugineum HOM05D003993 ORTHO05D005336 0.0e+00 1092.8 928 59.4
TPR.G36724 Trifolium pratense HOM05D003993 ORTHO05D005336 0.0e+00 1092.4 927 61.6
Carub.0003s2068 Capsella rubella HOM05D003993 ORTHO05D005336 0.0e+00 1089.7 927 59.3
Sc16g0006470 Simmondsia chinensis HOM05D003993 ORTHO05D005336 0.0e+00 1089.7 904 60.5
DCAR_010016 Daucus carota HOM05D003993 ORTHO05D005336 0.0e+00 1088.6 927 60.0
C01p43520 Brassica napus HOM05D003993 ORTHO05D005336 0.0e+00 1087.4 928 58.9
BolC1t04312H Brassica oleracea HOM05D003993 ORTHO05D005336 0.0e+00 1085.1 928 58.8
Solyc07g064080.4 Solanum lycopersicum HOM05D003993 ORTHO05D005336 0.0e+00 1084.3 928 60.6
Sp3g18740 Schrenkiella parvula HOM05D003993 ORTHO05D005336 0.0e+00 1082.8 926 59.1
BraA01t03515Z Brassica rapa HOM05D003993 ORTHO05D005336 0.0e+00 1081.6 928 58.7
BcaB04g20636 Brassica carinata HOM05D003993 ORTHO05D005336 0.0e+00 1081.2 927 59.1
AT3G20720 Arabidopsis thaliana HOM05D003993 ORTHO05D005336 0.0e+00 1080.9 926 58.7
EL10Ac4g07982 Beta vulgaris HOM05D003993 ORTHO05D005336 0.0e+00 1077.8 930 58.7
Nitab4.5_0000397g0110 Nicotiana tabacum HOM05D003993 ORTHO05D005336 0.0e+00 1076.2 1008 57.0
AUR62015640 Chenopodium quinoa HOM05D003993 ORTHO05D005336 0.0e+00 1075.5 949 57.7
AL3G34640 Arabidopsis lyrata HOM05D003993 ORTHO05D005336 6.6e-312 1074.3 927 59.1
A01p34110 Brassica napus HOM05D003993 ORTHO05D005336 6.6e-312 1074.3 928 58.5
BcaC09g49013 Brassica carinata HOM05D003993 ORTHO05D005336 6.6e-312 1073.9 927 58.5
ATR0073G006 Amborella trichopoda HOM05D003993 ORTHO05D005336 5.0e-310 1067.8 928 58.6
vmacro11768 Vaccinium macrocarpon HOM05D003993 ORTHO05D005336 6.3e-305 1050.8 926 58.1
Nitab4.5_0009192g0040 Nicotiana tabacum HOM05D003993 ORTHO05D005336 2.0e-303 1045.8 928 59.1
Lsat_1_v5_gn_7_108360 Lactuca sativa HOM05D003993 ORTHO05D005336 1.6e-300 1036.2 929 58.0
HPP92_011131 Vanilla planifolia HOM05D003993 ORTHO05D005336 6.1e-300 1034.2 928 57.1
Peaxi162Scf01086g00149 Petunia axillaris HOM05D003993 ORTHO05D005336 4.0e-299 1031.6 927 58.1
Aa31LG8G7470 Aethionema arabicum HOM05D003993 ORTHO05D005336 2.3e-291 1005.7 1005 53.8
Ah.06g183050 Amaranthus hybridus HOM05D003993 ORTHO05D005336 8.9e-291 1003.8 875 57.4
SEGI_25073 Sequoiadendron giganteum HOM05D003993 ORTHO05D005336 1.2e-279 966.8 969 51.5
SGA_v2.0_scaffold320G48573 Striga asiatica HOM05D003993 ORTHO05D005336 6.0e-279 964.5 942 53.4
Os04g0628600 Oryza sativa ssp. japonica HOM05D003993 ORTHO05D005336 5.6e-277 958.0 931 53.2
ECA246G2094 Erigeron canadensis HOM05D003993 ORTHO05D005336 3.0e-270 935.6 931 53.0
VMungo1127G1901 Vigna mungo HOM05D003993 ORTHO05D005336 6.6e-270 934.5 541 84.5
Duzib213G0987 Durio zibethinus HOM05D003993 ORTHO05D005336 8.1e-260 901.0 927 52.4
AagrBONN_evm.TU.Sc2ySwM_344.1679 Anthoceros agrestis HOM05D003993 ORTHO05D005336 5.5e-232 808.5 940 46.3
FAN21G3569 Fragaria x ananassa HOM05D003993 ORTHO05D005336 4.1e-227 792.3 593 66.9
Pp3c10_1850 Physcomitrium patens HOM05D003993 ORTHO05D005336 1.4e-224 783.9 991 44.2
SMO143G0035 Selaginella moellendorffii HOM05D003993 ORTHO05D005336 1.0e-222 777.7 923 46.6
Mapoly0007s0002 Marchantia polymorpha HOM05D003993 ORTHO05D005336 4.8e-220 768.8 973 44.3
Lsat_1_v5_gn_5_5700 Lactuca sativa HOM05D003993 ORTHO05D005336 4.2e-200 702.6 843 46.9
unitig_26.g9969 Utricularia gibba HOM05D003993 ORTHO05D005336 2.9e-180 636.7 953 40.9
AUR62020558 Chenopodium quinoa HOM05D003993 ORTHO05D005336 1.9e-171 607.4 565 54.3
SHI31871 Sapria himalayana HOM05D003993 ORTHO05D005336 1.2e-157 561.6 645 46.4
Zm00001eb431410 Zea mays HOM05D003993 ORTHO05D005336 1.5e-152 544.7 629 46.6
Pp3c15_5100 Physcomitrium patens HOM05D003993 ORTHO05D005336 9.6e-144 515.4 998 33.0
CBR_g39891 Chara braunii HOM05D003993 ORTHO05D005336 4.5e-141 506.5 1073 32.2
HanXRQChr08g0234101 Helianthus annuus HOM05D003993 ORTHO05D005336 5.5e-131 473.0 428 56.3
A05p28100 Brassica napus HOM05D003993 ORTHO05D005336 8.7e-129 465.7 776 39.7
BraA05t21692Z Brassica rapa HOM05D003993 ORTHO05D005336 4.0e-126 456.8 777 39.1
VMungo1127G0362 Vigna mungo HOM05D003993 ORTHO05D005336 8.5e-116 422.5 269 80.7
FAN21G2881 Fragaria x ananassa HOM05D003993 ORTHO05D005336 1.2e-114 418.7 386 57.5
Nn1g06997 Nelumbo nucifera HOM05D003993 ORTHO05D005336 4.6e-114 416.8 331 66.2
Hund02134 Selenicereus undatus HOM05D003993 ORTHO05D005336 1.5e-96 358.6 384 50.3
QL04p049176 Quercus lobata HOM05D003993 ORTHO05D005336 1.7e-84 318.5 201 78.1
arahy.Tifrunner.gnm1.ann1.R5QT9H Arachis hypogaea HOM05D003993 ORTHO05D005336 2.7e-82 311.2 719 34.4
Hund02131 Selenicereus undatus HOM05D003993 ORTHO05D005336 3.7e-79 300.8 360 46.7
QL05p071299 Quercus lobata HOM05D003993 ORTHO05D005336 1.0e-76 292.7 181 78.5
BcaC05g28293 Brassica carinata HOM05D003993 ORTHO05D005336 3.1e-65 254.6 301 48.5
QL11p046973 Quercus lobata HOM05D003993 ORTHO05D005336 3.5e-53 214.5 132 81.1
arahy.Tifrunner.gnm1.ann1.9VYU83 Arachis hypogaea HOM05D003993 ORTHO05D005336 1.8e-49 202.2 343 41.7
BcaB06g26142 Brassica carinata HOM05D003993 ORTHO05D005336 3.4e-48 198.0 292 39.4
C05p43510 Brassica napus HOM05D003993 ORTHO05D005336 3.4e-48 198.0 291 42.3
SHI31872 Sapria himalayana HOM05D003993 ORTHO05D005336 3.7e-47 194.5 175 60.0
arahy.Tifrunner.gnm1.ann1.UE9C9H Arachis hypogaea HOM05D003993 ORTHO05D005336 4.1e-46 191.0 164 63.4
BolC5t33074H Brassica oleracea HOM05D003993 ORTHO05D005336 7.3e-43 180.3 313 37.7
PGSC0003DMG401019261 Solanum tuberosum HOM05D003993 ORTHO05D005336 7.8e-37 160.2 232 43.5
arahy.Tifrunner.gnm1.ann1.8I3UM6 Arachis hypogaea HOM05D003993 ORTHO05D005336 1.7e-28 132.5 106 64.2
Rhsim07G0149200 Rhododendron simsii HOM05D003993 ORTHO05D005336 1.5e-27 129.4 110 61.8
arahy.Tifrunner.gnm1.ann1.BQ4HID Arachis hypogaea HOM05D003993 ORTHO05D005336 5.8e-24 117.5 96 61.5
BcaB06g26141 Brassica carinata HOM05D003993 ORTHO05D005336 2.2e-23 115.5 128 50.0
Lsat_1_v5_gn_4_127040 Lactuca sativa HOM05D003993 ORTHO05D002051 4.0e-17 94.7 148 36.5
arahy.Tifrunner.gnm1.ann1.43HIPW Arachis hypogaea HOM05D003993 ORTHO05D005336 4.6e-13 81.3 53 69.8
Os06g0731950 Oryza sativa ssp. japonica HOM05D003993 ORTHO05D005336 7.9e-13 80.5 81 46.9
HanXRQChr17g0562031 Helianthus annuus HOM05D003993 ORTHO05D005336 1.8e-12 79.3 88 47.7
BcaC05g28290 Brassica carinata HOM05D003993 ORTHO05D005336 6.7e-12 77.4 80 48.8
Rhsim07G0135200 Rhododendron simsii HOM05D000810 ORTHO05D001064 6.7e-12 77.4 65 61.5
BolC5t33071H Brassica oleracea HOM05D000001 ORTHO05D000003 1.4e-09 69.7 105 39.0
Lsat_1_v5_gn_4_137320 Lactuca sativa HOM05D000154 ORTHO05D000092 7.6e-08 63.9 49 67.3


User provided reference genes

Program Settings