Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.011G140200 Phaseolus vulgaris HOM05D006072 ORTHO05D007363 8.4e-67 256.9 132 100.0
Phvul.002G262300 Phaseolus vulgaris HOM05D006072 ORTHO05D007363 5.3e-29 131.3 86 81.4
VMungo0251G2066 Vigna mungo HOM05D006072 ORTHO05D007363 7.7e-28 127.5 86 80.2
Ca_17713_v3 Cicer arietinum L. HOM05D006072 ORTHO05D007363 6.7e-24 114.4 86 72.1
Glyma.05G181300 Glycine max HOM05D006072 ORTHO05D007363 1.1e-23 113.6 91 73.6
Glyma.08G139000 Glycine max HOM05D006072 ORTHO05D007363 7.4e-23 110.9 84 76.2
Medtr8g092370 Medicago truncatula HOM05D006072 ORTHO05D007363 1.7e-22 109.8 93 62.4
Medtr8g092700 Medicago truncatula HOM05D006072 ORTHO05D007363 1.7e-22 109.8 93 62.4
Lalb_Chr07g0184981 Lupinus albus HOM05D006072 ORTHO05D007363 6.3e-22 107.8 87 69.0
Medtr8g091400 Medicago truncatula HOM05D006072 ORTHO05D007363 6.3e-22 107.8 93 62.4
Lj4g0019082 Lotus japonicus HOM05D006072 ORTHO05D007363 1.4e-21 106.7 88 68.2
Psat7g053120 Pisum sativum HOM05D006072 ORTHO05D007363 1.4e-21 106.7 86 66.3
Medtr4g075230 Medicago truncatula HOM05D006072 ORTHO05D007363 9.1e-21 104.0 93 60.2
TPR.G2161 Trifolium pratense HOM05D006072 ORTHO05D007363 1.5e-20 103.2 86 66.3
Haze_24990 Corylus avellana HOM05D006072 ORTHO05D007363 2.6e-20 102.4 77 71.4
Sabra07G0072700 Salix brachista HOM05D006072 ORTHO05D007363 5.9e-20 101.3 99 58.6
Cfa002714 Carpinus fangiana HOM05D006072 ORTHO05D007363 2.9e-19 99.0 77 67.5
QL06p050421 Quercus lobata HOM05D006072 ORTHO05D007363 1.1e-18 97.1 86 65.1
Manes.12G138600 Manihot esculenta HOM05D006072 ORTHO05D007363 4.2e-18 95.1 92 55.4
Lalb_Chr12g0203671 Lupinus albus HOM05D006072 ORTHO05D007363 5.5e-18 94.7 86 64.0
CiPaw.03G138500 Carya illinoinensis HOM05D006072 ORTHO05D007363 9.4e-18 94.0 84 61.9
Atru.chr4.239 Acer truncatum HOM05D006072 ORTHO05D007363 1.2e-17 93.6 76 63.2
Potri.005G079500 Populus trichocarpa HOM05D006072 ORTHO05D007363 8.0e-17 90.9 86 58.1
DCAR_023269 Daucus carota HOM05D006072 ORTHO05D007363 1.0e-16 90.5 82 64.6
Duzib187G0709 Durio zibethinus HOM05D006072 ORTHO05D007363 1.0e-16 90.5 74 62.2
Ciclev10025690m.g Citrus clementina HOM05D006072 ORTHO05D007363 2.3e-16 89.4 88 58.0
Nn3g18504 Nelumbo nucifera HOM05D006072 ORTHO05D007363 2.3e-16 89.4 75 64.0
arahy.Tifrunner.gnm1.ann1.78KFMW Arachis hypogaea HOM05D006072 ORTHO05D007363 3.0e-16 89.0 82 64.6
arahy.Tifrunner.gnm1.ann1.G5ZNF6 Arachis hypogaea HOM05D006072 ORTHO05D007363 3.0e-16 89.0 82 64.6
arahy.Tifrunner.gnm1.ann1.U641A1 Arachis hypogaea HOM05D006072 ORTHO05D007363 3.0e-16 89.0 82 64.6
arahy.Tifrunner.gnm1.ann1.W4NXZ5 Arachis hypogaea HOM05D006072 ORTHO05D007363 3.0e-16 89.0 82 64.6
CANSAT01G0770 Cannabis sativa HOM05D006072 ORTHO05D007363 3.9e-16 88.6 77 63.6
Lsat_1_v5_gn_3_92501 Lactuca sativa HOM05D006072 ORTHO05D007363 5.2e-16 88.2 84 60.7
TAR622G0191 Trochodendron aralioides HOM05D006072 ORTHO05D007363 5.2e-16 88.2 74 67.6
Duzib147G1157 Durio zibethinus HOM05D006072 ORTHO05D007363 6.7e-16 87.8 75 60.0
Gohir.A11G199500 Gossypium hirsutum HOM05D006072 ORTHO05D007363 8.8e-16 87.4 75 58.7
Gohir.D11G224600 Gossypium hirsutum HOM05D006072 ORTHO05D007363 8.8e-16 87.4 75 60.0
Thecc.01G107000 Theobroma cacao HOM05D006072 ORTHO05D007363 8.8e-16 87.4 75 62.7
TAR629G3443 Trochodendron aralioides HOM05D006072 ORTHO05D007363 1.5e-15 86.7 74 67.6
Cpa.g.sc131.23 Carica papaya HOM05D006072 ORTHO05D007363 2.0e-15 86.3 110 50.9
Gorai.007G241900 Gossypium raimondii HOM05D006072 ORTHO05D007363 2.6e-15 85.9 75 60.0
Gorai.008G103500 Gossypium raimondii HOM05D006072 ORTHO05D007363 3.3e-15 85.5 77 55.8
Gohir.A12G093200 Gossypium hirsutum HOM05D006072 ORTHO05D007363 9.7e-15 84.0 77 54.5
ECA246G2885 Erigeron canadensis HOM05D006072 ORTHO05D007363 1.3e-14 83.6 78 61.5
Gohir.D12G095100 Gossypium hirsutum HOM05D006072 ORTHO05D007363 2.2e-14 82.8 77 53.2
PGR083G2817 Punica granatum HOM05D006072 ORTHO05D007363 4.8e-14 81.6 83 56.6
EL10Ac1g00741 Beta vulgaris HOM05D006072 ORTHO05D007363 1.8e-13 79.7 75 58.7
MBI19_g02922_MAGBIO Magnolia biondii HOM05D006072 ORTHO05D007363 2.4e-13 79.3 75 56.0
Ca_22792_v3 Cicer arietinum L. HOM05D006072 ORTHO05D007363 3.1e-13 79.0 56 80.4
Sc18g0004880 Simmondsia chinensis HOM05D006072 ORTHO05D007363 9.1e-13 77.4 98 46.9
GSVIVG01011570001 Vitis vinifera HOM05D006072 ORTHO05D007363 1.6e-12 76.6 75 58.7
Ah.14g079100 Amaranthus hybridus HOM05D006072 ORTHO05D007363 2.0e-12 76.3 72 56.9
AUR62003481 Chenopodium quinoa HOM05D006072 ORTHO05D007363 2.0e-12 76.3 84 50.0
AUR62017790 Chenopodium quinoa HOM05D006072 ORTHO05D007363 3.5e-12 75.5 81 50.6
Eucgr.H00590 Eucalyptus grandis HOM05D006072 ORTHO05D007363 3.5e-12 75.5 74 56.8
GSVIVG01011560001 Vitis vinifera HOM05D006072 ORTHO05D007363 4.5e-12 75.1 75 58.7
ATR0598G256 Amborella trichopoda HOM05D006072 ORTHO05D007363 5.9e-12 74.7 73 57.5
GSVIVG01011561001 Vitis vinifera HOM05D006072 ORTHO05D007363 5.9e-12 74.7 76 56.6
AUR62015493 Chenopodium quinoa HOM05D006072 ORTHO05D007363 2.2e-11 72.8 75 54.7
AUR62002207 Chenopodium quinoa HOM05D006072 ORTHO05D007363 2.9e-11 72.4 75 53.3
Oeu025733.1 Olea europaea HOM05D006072 ORTHO05D007363 2.9e-11 72.4 76 55.3
Ah.09g224330 Amaranthus hybridus HOM05D006072 ORTHO05D007363 3.8e-11 72.0 75 52.0
Dinv07032 Davidia involucrata HOM05D006072 ORTHO05D007363 6.5e-11 71.2 75 52.0
Dinv16779 Davidia involucrata HOM05D006072 ORTHO05D007363 8.5e-11 70.9 72 55.6
Actinidia12426 Actinidia chinensis HOM05D006072 ORTHO05D007363 1.1e-10 70.5 108 42.6
HPP92_004203 Vanilla planifolia HOM05D006072 ORTHO05D007363 1.1e-10 70.5 73 52.1
ATR0598G294 Amborella trichopoda HOM05D006072 ORTHO05D007363 1.5e-10 70.1 73 56.2
CSS0011017 Camellia sinensis var. sinensis HOM05D006072 ORTHO05D007363 1.5e-10 70.1 74 54.1
Dinv12556 Davidia involucrata HOM05D006072 ORTHO05D007363 1.5e-10 70.1 74 51.4
Ah.14g079240 Amaranthus hybridus HOM05D006072 ORTHO05D007363 4.2e-10 68.6 81 48.1
ATR0598G193 Amborella trichopoda HOM05D006072 ORTHO05D007363 5.5e-10 68.2 77 54.5
Nitab4.5_0000876g0020 Nicotiana tabacum HOM05D006072 ORTHO05D007363 5.5e-10 68.2 68 55.9
Actinidia24189 Actinidia chinensis HOM05D006072 ORTHO05D007363 7.2e-10 67.8 74 51.4
Hma1.2p1_0523F.1_g172190 Hydrangea macrophylla HOM05D006072 ORTHO05D007363 7.2e-10 67.8 75 56.0
SalBow4G0595 Salvia bowleyana HOM05D006072 ORTHO05D007363 1.2e-09 67.0 82 47.6
SalBow3G0772 Salvia bowleyana HOM05D006072 ORTHO05D007363 1.6e-09 66.6 102 44.1
Medtr0082s0140 Medicago truncatula HOM05D006072 ORTHO05D007363 2.7e-09 65.9 48 72.9
Nitab4.5_0004318g0070 Nicotiana tabacum HOM05D006072 ORTHO05D007363 2.7e-09 65.9 74 51.4
Migut.D00310 Erythranthe guttata HOM05D006072 ORTHO05D007363 3.6e-09 65.5 76 51.3
Nitab4.5_0006309g0060 Nicotiana tabacum HOM05D006072 ORTHO05D007363 3.6e-09 65.5 74 51.4
ATR0598G249 Amborella trichopoda HOM05D006072 ORTHO05D007363 4.7e-09 65.1 73 52.1
Cc02_g18000 Coffea canephora HOM05D006072 ORTHO05D007363 4.7e-09 65.1 76 51.3
Rhsim09G0083400 Rhododendron simsii HOM05D006072 ORTHO05D007363 4.7e-09 65.1 101 42.6
Rhsim09G0083000 Rhododendron simsii HOM05D006072 ORTHO05D007363 8.0e-09 64.3 74 52.7
Rhsim09G0083300 Rhododendron simsii HOM05D006072 ORTHO05D007363 8.0e-09 64.3 75 53.3
Solyc10g051090.3 Solanum lycopersicum HOM05D006072 ORTHO05D007363 8.0e-09 64.3 76 48.7
Sopen10g022790 Solanum pennellii HOM05D006072 ORTHO05D007363 8.0e-09 64.3 76 48.7
CAN.G3.7 Capsicum annuum HOM05D006072 ORTHO05D007363 1.4e-08 63.5 74 52.7
CSS0004323 Camellia sinensis var. sinensis HOM05D006072 ORTHO05D007363 1.8e-08 63.2 77 46.8
CAN.G1.46 Capsicum annuum HOM05D006072 ORTHO05D007363 1.8e-08 63.2 58 56.9
Oeu007228.1 Olea europaea HOM05D006072 ORTHO05D007363 1.8e-08 63.2 76 48.7
Peaxi162Scf00641g00039 Petunia axillaris HOM05D006072 ORTHO05D007363 2.3e-08 62.8 77 46.8
Migut.N01215 Erythranthe guttata HOM05D006072 ORTHO05D007363 4.0e-08 62.0 75 46.7
Peaxi162Scf00003g00145 Petunia axillaris HOM05D006072 ORTHO05D007363 5.2e-08 61.6 68 48.5
Peaxi162Scf00003g00149 Petunia axillaris HOM05D006072 ORTHO05D007363 5.2e-08 61.6 68 48.5
Peaxi162Scf00003g01433 Petunia axillaris HOM05D005785 ORTHO05D007962 5.2e-08 61.6 68 48.5
Rhsim13G0107200 Rhododendron simsii HOM05D006072 ORTHO05D007363 5.2e-08 61.6 77 49.4
Actinidia07224 Actinidia chinensis HOM05D006072 ORTHO05D007363 8.8e-08 60.8 132 40.2
PGSC0003DMG400019330 Solanum tuberosum HOM05D006072 ORTHO05D007363 1.2e-07 60.5 74 50.0
Sopen09g027060 Solanum pennellii HOM05D006072 ORTHO05D007363 1.5e-07 60.1 74 50.0
Lsat_1_v5_gn_5_36701 Lactuca sativa HOM05D006072 ORTHO05D007363 2.6e-07 59.3 75 44.0
Lalb_Chr11g0064561 Lupinus albus HOM05D006072 ORTHO05D007363 5.7e-07 58.2 45 68.9
Solyc09g065320.3 Solanum lycopersicum HOM05D006072 ORTHO05D007363 5.7e-07 58.2 74 48.6
Cc01_g19360 Coffea canephora HOM05D006072 ORTHO05D007363 7.5e-07 57.8 71 50.7
PGR083G1472 Punica granatum HOM05D006072 ORTHO05D007363 9.7e-07 57.4 74 44.6
Dinv20308 Davidia involucrata HOM05D006072 ORTHO05D007363 1.3e-06 57.0 75 46.7
Os02g0491300 Oryza sativa ssp. japonica HOM05D006072 ORTHO05D007363 1.3e-06 57.0 76 44.7
SGA_v2.0_scaffold55G19813 Striga asiatica HOM05D006072 ORTHO05D007363 1.3e-06 57.0 74 43.2
Ca_20317_v3 Cicer arietinum L. HOM05D006072 ORTHO05D007363 2.8e-06 55.8 85 44.7
SGA_v2.0_scaffold138G35329 Striga asiatica HOM05D000358 ORTHO05D007363 2.8e-06 55.8 79 45.6


User provided reference genes

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