Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.011G139900 Phaseolus vulgaris HOM05D002065 ORTHO05D002050 1.1e-113 413.3 209 100.0
VMungo1127G0373 Vigna mungo HOM05D002065 ORTHO05D002050 1.3e-93 346.7 203 86.7
Glyma.06G269200 Glycine max HOM05D002065 ORTHO05D002050 2.8e-72 275.8 213 67.6
TPR.G25922 Trifolium pratense HOM05D002065 ORTHO05D002050 8.3e-53 211.1 212 57.1
Psat7g161480 Pisum sativum HOM05D002065 ORTHO05D002050 2.7e-51 206.1 208 54.8
Medtr4g081200 Medicago truncatula HOM05D002065 ORTHO05D002050 1.3e-50 203.8 212 56.1
Lalb_Chr14g0366161 Lupinus albus HOM05D002065 ORTHO05D002050 2.5e-41 172.9 210 48.1
Lj3g0020040 Lotus japonicus HOM05D002065 ORTHO05D002050 2.9e-37 159.5 212 47.2
arahy.Tifrunner.gnm1.ann1.TAH91K Arachis hypogaea HOM05D002065 ORTHO05D002050 6.4e-37 158.3 198 46.0
Psat5g251880 Pisum sativum HOM05D002065 ORTHO05D002050 1.3e-34 150.6 213 44.6
Ca_01751_v3 Cicer arietinum L. HOM05D002065 ORTHO05D002050 1.9e-33 146.7 194 42.8
Glyma.13G287500 Glycine max HOM05D002065 ORTHO05D002050 5.6e-33 145.2 211 45.0
Glyma.12G214100 Glycine max HOM05D002065 ORTHO05D002050 8.1e-32 141.4 218 44.0
Medtr2g082990 Medicago truncatula HOM05D002065 ORTHO05D002050 2.6e-30 136.3 224 42.0
VMungo1080G1659 Vigna mungo HOM05D002065 ORTHO05D002050 3.4e-30 136.0 215 43.3
Phvul.005G091900 Phaseolus vulgaris HOM05D002065 ORTHO05D002050 5.8e-30 135.2 218 44.5
Duzib213G0394 Durio zibethinus HOM05D002065 ORTHO05D002050 6.4e-29 131.7 202 42.1
TPR.G36815 Trifolium pratense HOM05D002065 ORTHO05D002050 2.1e-27 126.7 195 39.5
FAN16G0462 Fragaria x ananassa HOM05D002065 ORTHO05D002050 3.5e-27 125.9 190 42.6
FAN21G3193 Fragaria x ananassa HOM05D002065 ORTHO05D002050 3.5e-27 125.9 190 42.6
MD03G1211100 Malus domestica HOM05D002065 ORTHO05D002050 3.5e-27 125.9 192 43.2
Gohir.A01G074800 Gossypium hirsutum HOM05D002065 ORTHO05D002050 1.0e-26 124.4 200 39.5
Manes.03G123200 Manihot esculenta HOM05D002065 ORTHO05D002050 1.3e-26 124.0 209 39.2
Thecc.07G052100 Theobroma cacao HOM05D002065 ORTHO05D002050 1.3e-26 124.0 216 38.9
RcHm_v2.0_Chr5g0037701 Rosa chinensis HOM05D002065 ORTHO05D002050 3.0e-26 122.9 190 41.6
Gorai.002G082700 Gossypium raimondii HOM05D002065 ORTHO05D002050 3.9e-26 122.5 200 39.5
MD03G1210900 Malus domestica HOM05D002065 ORTHO05D002050 6.7e-26 121.7 192 42.7
Gohir.D01G061300 Gossypium hirsutum HOM05D002065 ORTHO05D002050 8.7e-26 121.3 200 39.0
FvH4_3g21890 Fragaria vesca HOM05D002065 ORTHO05D002050 1.1e-25 120.9 190 41.1
FAN11G3928 Fragaria x ananassa HOM05D002065 ORTHO05D002050 1.1e-25 120.9 190 41.1
Duzib170G0757 Durio zibethinus HOM05D002065 ORTHO05D002050 1.9e-25 120.2 197 41.1
MD03G1211000 Malus domestica HOM05D002065 ORTHO05D002050 2.5e-25 119.8 192 42.7
COL.COLO4_09575 Corchorus olitorius HOM05D002065 ORTHO05D002050 4.3e-25 119.0 211 39.8
Ciclev10009510m.g Citrus clementina HOM05D002065 ORTHO05D002050 1.6e-24 117.1 177 41.2
CARHR096380 Cardamine hirsuta HOM05D002065 ORTHO05D002050 2.1e-24 116.7 178 38.2
MD11G1225800 Malus domestica HOM05D002065 ORTHO05D002050 3.7e-24 115.9 185 43.2
RhsimUnG0253100 Rhododendron simsii HOM05D002065 ORTHO05D002050 3.7e-24 115.9 204 37.7
Migut.M01810 Erythranthe guttata HOM05D002065 ORTHO05D002050 6.2e-24 115.2 192 40.1
MSTRG.14416 Avicennia marina HOM05D002065 ORTHO05D002050 1.4e-23 114.0 190 38.4
TWI39G0180 Tripterygium wilfordii HOM05D002065 ORTHO05D002050 4.0e-23 112.5 184 37.5
Thhalv10021500m.g Eutrema salsugineum HOM05D002065 ORTHO05D002050 5.3e-23 112.1 181 39.2
QL08p013247 Quercus lobata HOM05D002065 ORTHO05D002050 9.0e-23 111.3 208 38.5
SalBow8G3023 Salvia bowleyana HOM05D002065 ORTHO05D002050 9.0e-23 111.3 182 40.1
Atru.chr2.3214 Acer truncatum HOM05D002065 ORTHO05D002050 2.0e-22 110.2 216 35.6
Manes.15G076400 Manihot esculenta HOM05D002065 ORTHO05D002050 2.0e-22 110.2 214 36.4
TAR629G2752 Trochodendron aralioides HOM05D002065 ORTHO05D002050 2.6e-22 109.8 190 36.3
Gorai.013G163600 Gossypium raimondii HOM05D002065 ORTHO05D002050 3.4e-22 109.4 190 41.1
MELO3C018104.2 Cucumis melo HOM05D002065 ORTHO05D002050 7.6e-22 108.2 200 37.5
CiPaw.11G184100 Carya illinoinensis HOM05D002065 ORTHO05D002050 1.0e-21 107.8 209 35.4
Prupe.4G204400 Prunus persica HOM05D002065 ORTHO05D002050 1.3e-21 107.5 187 38.5
BcaB04g19117 Brassica carinata HOM05D002065 ORTHO05D002050 2.2e-21 106.7 180 35.6
Duzib213G0251 Durio zibethinus HOM05D002065 ORTHO05D002050 2.9e-21 106.3 190 38.4
THA.LOC104817885 Tarenaya hassleriana HOM05D002065 ORTHO05D002050 3.8e-21 105.9 174 37.9
ClCG05G014750 Citrullus lanatus HOM05D002065 ORTHO05D002050 4.9e-21 105.5 204 38.2
Haze_09616 Corylus avellana HOM05D002065 ORTHO05D002050 4.9e-21 105.5 193 36.3
SalBow7G4713 Salvia bowleyana HOM05D002065 ORTHO05D002050 4.9e-21 105.5 174 43.1
BcaC09g49003 Brassica carinata HOM05D002065 ORTHO05D002050 8.4e-21 104.8 179 35.8
BolC1t04321H Brassica oleracea HOM05D002065 ORTHO05D002050 8.4e-21 104.8 179 35.8
CsaV3_3G023120 Cucumis sativus L. HOM05D002065 ORTHO05D002050 8.4e-21 104.8 205 37.6
AT3G20600 Arabidopsis thaliana HOM05D002065 ORTHO05D002050 1.9e-20 103.6 182 34.6
BcaC01g03546 Brassica carinata HOM05D002065 ORTHO05D002050 1.9e-20 103.6 211 33.2
A01p34210 Brassica napus HOM05D002065 ORTHO05D002050 1.9e-20 103.6 179 35.2
C03p51220 Brassica napus HOM05D002065 ORTHO05D002050 1.9e-20 103.6 211 33.2
BolC3t17412H Brassica oleracea HOM05D002065 ORTHO05D002050 1.9e-20 103.6 211 33.2
BraA01t03521Z Brassica rapa HOM05D002065 ORTHO05D002050 1.9e-20 103.6 179 35.2
CANSAT64G1415 Cannabis sativa HOM05D002065 ORTHO05D002050 1.9e-20 103.6 220 34.5
Cfa020412 Carpinus fangiana HOM05D002065 ORTHO05D002050 2.5e-20 103.2 193 36.3
A03p41840 Brassica napus HOM05D002065 ORTHO05D002050 3.2e-20 102.8 180 35.0
BraA03t13337Z Brassica rapa HOM05D002065 ORTHO05D002050 3.2e-20 102.8 180 35.0
BcaB04g20643 Brassica carinata HOM05D002065 ORTHO05D002050 4.2e-20 102.4 179 35.2
Hma1.2p1_1869F.1_g306050 Hydrangea macrophylla HOM05D002065 ORTHO05D002050 4.2e-20 102.4 178 37.6
DCAR_022527 Daucus carota HOM05D002065 ORTHO05D002050 5.5e-20 102.1 182 37.9
AL3G34460 Arabidopsis lyrata HOM05D002065 ORTHO05D002050 7.1e-20 101.7 182 33.5
Sabra11G0120300 Salix brachista HOM05D002065 ORTHO05D002050 7.1e-20 101.7 196 37.8
Sed0026241 Sechium edule HOM05D002065 ORTHO05D002050 9.3e-20 101.3 202 36.6
AL3G34450 Arabidopsis lyrata HOM05D002065 ORTHO05D002050 2.1e-19 100.1 183 35.5
Cpa.g.c26548.3 Carica papaya HOM05D002065 ORTHO05D002050 2.7e-19 99.8 204 36.3
Sabra16G0283800 Salix brachista HOM05D002065 ORTHO05D002050 2.7e-19 99.8 205 37.1
TWI38G0302 Tripterygium wilfordii HOM05D002065 ORTHO05D002050 3.5e-19 99.4 179 34.6
Carub.0003s2057 Capsella rubella HOM05D002065 ORTHO05D002050 6.0e-19 98.6 179 36.3
Lsat_1_v5_gn_3_120800 Lactuca sativa HOM05D002065 ORTHO05D002050 7.9e-19 98.2 186 37.1
Potri.011G133900 Populus trichocarpa HOM05D002065 ORTHO05D002050 7.9e-19 98.2 204 35.8
Nn1g03652 Nelumbo nucifera HOM05D002065 ORTHO05D002050 1.0e-18 97.8 179 39.7
TAR626G1743 Trochodendron aralioides HOM05D002065 ORTHO05D002050 1.0e-18 97.8 212 34.0
EL10Ac4g07955 Beta vulgaris HOM05D002065 ORTHO05D002050 1.3e-18 97.4 173 38.2
Sp3g18610 Schrenkiella parvula HOM05D002065 ORTHO05D002050 1.3e-18 97.4 180 34.4
PGR083G2635 Punica granatum HOM05D002065 ORTHO05D002050 1.8e-18 97.1 207 35.7
Sed0007986 Sechium edule HOM05D002065 ORTHO05D002050 1.8e-18 97.1 207 36.2
Nitab4.5_0000092g0090 Nicotiana tabacum HOM05D002065 ORTHO05D002050 2.3e-18 96.7 156 39.1
Aa31LG8G7410 Aethionema arabicum HOM05D002065 ORTHO05D002050 3.0e-18 96.3 189 37.6
Dinv40711 Davidia involucrata HOM05D002065 ORTHO05D001766 3.0e-18 96.3 186 37.6
AT3G20590 Arabidopsis thaliana HOM05D002065 ORTHO05D002050 3.9e-18 95.9 183 35.0
Cc05_g13270 Coffea canephora HOM05D002065 ORTHO05D002050 3.9e-18 95.9 178 38.2
Solyc12g005230.3 Solanum lycopersicum HOM05D001540 ORTHO05D001520 3.9e-18 95.9 189 34.4
Oeu007632.1 Olea europaea HOM05D002065 ORTHO05D002050 5.1e-18 95.5 212 34.9
Lj8P166T75 Lonicera japonica HOM05D002065 ORTHO05D002050 6.7e-18 95.1 184 37.5
Cfa020411 Carpinus fangiana HOM05D002065 ORTHO05D002050 8.7e-18 94.7 197 32.0
Haze_09617 Corylus avellana HOM05D002065 ORTHO05D002050 1.1e-17 94.4 191 30.4
PSO017G0621 Papaver somniferum HOM05D002065 ORTHO05D002050 1.1e-17 94.4 210 32.4
Sopen12g001210 Solanum pennellii HOM05D002065 ORTHO05D002050 1.1e-17 94.4 172 35.5
SGA_v2.0_scaffold27G11640 Striga asiatica HOM05D002065 ORTHO05D002050 1.1e-17 94.4 201 35.8
Nn1g07007 Nelumbo nucifera HOM05D002065 ORTHO05D002050 1.5e-17 94.0 185 35.7
Lsat_1_v5_gn_5_5781 Lactuca sativa HOM05D002065 ORTHO05D002050 2.5e-17 93.2 177 35.0
Dinv22303 Davidia involucrata HOM05D002065 ORTHO05D002050 5.7e-17 92.0 170 35.3
Actinidia09932 Actinidia chinensis HOM05D002065 ORTHO05D002050 2.1e-16 90.1 191 37.7
CAN.G140.7 Capsicum annuum HOM05D002065 ORTHO05D002050 2.1e-16 90.1 173 35.3
Potri.001G418000 Populus trichocarpa HOM05D002065 ORTHO05D002050 6.2e-16 88.6 200 36.0
Oeu062613.1 Olea europaea HOM05D002065 ORTHO05D002050 8.2e-16 88.2 185 35.1
MBI18_g44238_MAGBIO Magnolia biondii HOM05D002065 ORTHO05D002050 1.1e-15 87.8 170 40.0
Eucgr.F00981 Eucalyptus grandis HOM05D002065 ORTHO05D002050 1.4e-15 87.4 179 35.2
MBI18_g41997_MAGBIO Magnolia biondii HOM05D002065 ORTHO05D002050 1.8e-15 87.0 170 40.0
PGSC0003DMG400032231 Solanum tuberosum HOM05D002065 ORTHO05D002050 3.1e-15 86.3 173 36.4
Solyc01g006320.4 Solanum lycopersicum HOM05D002065 ORTHO05D002050 4.0e-15 85.9 167 35.3
Actinidia35318 Actinidia chinensis HOM05D000018 ORTHO05D001766 5.3e-15 85.5 186 37.1
MBI18_g44237_MAGBIO Magnolia biondii HOM05D002065 ORTHO05D002050 5.3e-15 85.5 170 38.8
Sp3g18640 Schrenkiella parvula HOM05D002065 ORTHO05D002050 5.3e-15 85.5 213 32.9
Aqoxy4G02007 Aquilegia oxysepala HOM05D002065 ORTHO05D002050 6.9e-15 85.1 174 35.6
Prupe.6G166500 Prunus persica HOM05D002065 ORTHO05D002050 6.9e-15 85.1 152 39.5
Aa31LG8G7400 Aethionema arabicum HOM05D002065 ORTHO05D002050 2.6e-14 83.2 184 33.2
AT3G20610 Arabidopsis thaliana HOM05D002065 ORTHO05D002050 2.6e-14 83.2 184 34.2
Carub.0003s2058 Capsella rubella HOM05D002065 ORTHO05D002050 3.4e-14 82.8 183 35.0
PSO170G3882 Papaver somniferum HOM05D002065 ORTHO05D002050 5.8e-14 82.0 173 35.3
TAR626G0982 Trochodendron aralioides HOM05D002065 ORTHO05D002050 7.6e-14 81.6 197 32.0
AUR62015652 Chenopodium quinoa HOM05D002065 ORTHO05D002050 2.9e-13 79.7 172 33.7
AUR62020549 Chenopodium quinoa HOM05D002065 ORTHO05D002050 3.8e-13 79.3 181 32.6
Eucgr.F00979 Eucalyptus grandis HOM05D002065 ORTHO05D002050 3.8e-13 79.3 143 37.8
Hma1.2p1_1564F.1_g290830 Hydrangea macrophylla HOM05D002065 ORTHO05D002050 5.5e-12 75.5 196 34.7
Sopen01g002320 Solanum pennellii HOM05D002065 ORTHO05D002050 1.2e-11 74.3 150 35.3
EL10Ac4g07956 Beta vulgaris HOM05D002065 ORTHO05D002050 1.6e-11 73.9 164 34.8
Oeu042915.1 Olea europaea HOM05D002065 ORTHO05D002050 1.6e-11 73.9 138 37.7
Glyma.10G129900 Glycine max HOM05D002065 ORTHO05D002050 1.0e-10 71.2 121 43.8
Sp3g18650 Schrenkiella parvula HOM05D002065 ORTHO05D002050 1.3e-10 70.9 172 33.7
FvH4_3g02720 Fragaria vesca HOM05D002065 ORTHO05D002050 1.8e-10 70.5 181 29.3
MBI02_g10994_MAGBIO Magnolia biondii HOM05D002065 ORTHO05D002050 1.8e-10 70.5 176 34.1
MBI18_g44236_MAGBIO Magnolia biondii HOM05D002065 ORTHO05D002050 1.8e-10 70.5 206 32.5
CiPaw.11G184300 Carya illinoinensis HOM05D002065 ORTHO05D002050 2.3e-10 70.1 166 30.1
FAN25G0723 Fragaria x ananassa HOM05D002065 ORTHO05D002050 2.3e-10 70.1 181 29.3
ATR0794G125 Amborella trichopoda HOM05D002065 ORTHO05D002050 5.1e-10 68.9 196 32.7
Hma1.2p1_1869F.1_g306060 Hydrangea macrophylla HOM05D002065 ORTHO05D002050 5.1e-10 68.9 166 32.5
C01p43600 Brassica napus HOM05D002065 ORTHO05D002050 1.9e-09 67.0 120 34.2
PSO500G0109 Papaver somniferum HOM05D002065 ORTHO05D002050 1.9e-09 67.0 160 31.9
FAN21G3944 Fragaria x ananassa HOM05D002065 ORTHO05D002050 2.5e-09 66.6 181 28.2
Peaxi162Scf00192g00005 Petunia axillaris HOM05D002065 ORTHO05D002050 3.3e-09 66.2 146 31.5
CARHR096390 Cardamine hirsuta HOM05D002065 ORTHO05D002050 4.3e-09 65.9 177 31.1
Sp3g18630 Schrenkiella parvula HOM05D002065 ORTHO05D002050 4.3e-09 65.9 123 35.8
ATR0794G057 Amborella trichopoda HOM05D002065 ORTHO05D002050 7.4e-09 65.1 180 32.8
CAN.G140.6 Capsicum annuum HOM05D002065 ORTHO05D002050 7.4e-09 65.1 136 32.4
BcaB06g26126 Brassica carinata HOM05D002065 ORTHO05D002050 9.7e-09 64.7 192 30.2
A05p28250 Brassica napus HOM05D001038 ORTHO05D019929 9.7e-09 64.7 192 30.2
Thecc.06G213400 Theobroma cacao HOM05D002065 ORTHO05D002050 9.7e-09 64.7 166 28.3
BcaC05g28309 Brassica carinata HOM05D002065 ORTHO05D002050 1.6e-08 63.9 200 30.0
C05p43700 Brassica napus HOM05D002065 ORTHO05D002050 1.6e-08 63.9 200 30.0
BraA05t21707Z Brassica rapa HOM05D002065 ORTHO05D002050 1.6e-08 63.9 200 30.0
COL.COLO4_31720 Corchorus olitorius HOM05D004864 ORTHO05D005393 6.3e-08 62.0 169 29.6
PGSC0003DMG400025621 Solanum tuberosum HOM05D002065 ORTHO05D002050 3.1e-07 59.7 109 34.9
Gohir.A06G144950 Gossypium hirsutum HOM05D002065 ORTHO05D002050 4.1e-07 59.3 176 28.4
AL3G34470 Arabidopsis lyrata HOM05D002065 ORTHO05D002050 5.3e-07 58.9 169 30.2
Thhalv10022399m.g Eutrema salsugineum HOM05D002065 ORTHO05D002050 5.3e-07 58.9 146 32.9
Gohir.D06G151332 Gossypium hirsutum HOM05D002065 ORTHO05D002050 5.3e-07 58.9 173 26.6
Gorai.010G176400 Gossypium raimondii HOM05D002065 ORTHO05D002050 5.3e-07 58.9 173 26.6
TWI38G0471 Tripterygium wilfordii HOM05D002065 ORTHO05D002050 9.0e-07 58.2 149 28.9
Sc01g0007380 Simmondsia chinensis HOM05D002065 ORTHO05D002050 1.2e-06 57.8 207 28.0
Gohir.A13G141050 Gossypium hirsutum HOM05D002065 ORTHO05D002050 1.5e-06 57.4 99 41.4
Prupe.4G027000 Prunus persica HOM05D002065 ORTHO05D002050 1.5e-06 57.4 133 30.1
Nitab4.5_0005041g0020 Nicotiana tabacum HOM05D002065 ORTHO05D002050 2.0e-06 57.0 126 31.7
Lj8C77T5 Lonicera japonica HOM05D002065 ORTHO05D002050 5.9e-06 55.5 160 29.4
Rhsim13G0158100 Rhododendron simsii HOM05D002065 ORTHO05D002050 7.7e-06 55.1 133 29.3
PGSC0003DMG400032148 Solanum tuberosum HOM05D002065 ORTHO05D002050 7.7e-06 55.1 104 33.7


User provided reference genes

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