Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.011G139700 Phaseolus vulgaris HOM05D004191 ORTHO05D004887 3.2e-104 381.7 187 100.0
VMungo1127G0852 Vigna mungo HOM05D004191 ORTHO05D004887 2.1e-103 379.0 187 98.4
Glyma.06G269400 Glycine max HOM05D004191 ORTHO05D004887 4.6e-103 377.9 187 98.4
Glyma.12G135200 Glycine max HOM05D004191 ORTHO05D004887 4.6e-103 377.9 187 98.4
Lj3g0027602 Lotus japonicus HOM05D004191 ORTHO05D004887 3.1e-99 365.2 187 95.2
Lalb_Chr19g0134771 Lupinus albus HOM05D004191 ORTHO05D004887 3.1e-99 365.2 187 95.2
Lalb_Chr03g0030141 Lupinus albus HOM05D004191 ORTHO05D004887 1.2e-98 363.2 187 94.7
FvH4_3g21920 Fragaria vesca HOM05D004191 ORTHO05D004887 4.5e-98 361.3 187 93.0
FAN16G1028 Fragaria x ananassa HOM05D004191 ORTHO05D004887 4.5e-98 361.3 187 93.0
RcHm_v2.0_Chr5g0037731 Rosa chinensis HOM05D004191 ORTHO05D004887 4.5e-98 361.3 187 93.0
TPR.G25893 Trifolium pratense HOM05D004191 ORTHO05D004887 4.5e-98 361.3 187 94.7
Ca_18852_v3 Cicer arietinum L. HOM05D004191 ORTHO05D004887 5.8e-98 360.9 187 94.1
FAN21G0017 Fragaria x ananassa HOM05D004191 ORTHO05D004887 1.0e-97 360.1 187 92.5
FAN25G1832 Fragaria x ananassa HOM05D004191 ORTHO05D004887 1.0e-97 360.1 187 92.5
MD03G1210500 Malus domestica HOM05D004191 ORTHO05D004887 1.3e-97 359.8 187 92.5
Prupe.4G204700 Prunus persica HOM05D004191 ORTHO05D004887 1.3e-97 359.8 187 92.5
Duzib093G1201 Durio zibethinus HOM05D004191 ORTHO05D004887 1.7e-97 359.4 187 93.6
MD11G1225200 Malus domestica HOM05D004191 ORTHO05D004887 3.8e-97 358.2 187 92.0
arahy.Tifrunner.gnm1.ann1.HY89VY Arachis hypogaea HOM05D004191 ORTHO05D004887 1.1e-96 356.7 187 92.0
Duzib106G0849 Durio zibethinus HOM05D004191 ORTHO05D004887 1.4e-96 356.3 187 92.5
CiPaw.11G184500 Carya illinoinensis HOM05D004191 ORTHO05D004887 1.9e-96 355.9 187 91.4
arahy.Tifrunner.gnm1.ann1.B9KZG1 Arachis hypogaea HOM05D004191 ORTHO05D004887 2.5e-96 355.5 187 92.0
CANSAT80G0944 Cannabis sativa HOM05D004191 ORTHO05D004887 3.2e-96 355.1 187 92.0
QL08p013180 Quercus lobata HOM05D004191 ORTHO05D004887 3.2e-96 355.1 186 92.5
Thecc.05G140700 Theobroma cacao HOM05D004191 ORTHO05D004887 3.2e-96 355.1 187 92.5
CSS0034391 Camellia sinensis var. sinensis HOM05D004191 ORTHO05D004887 4.2e-96 354.8 187 92.5
Gohir.A09G118400 Gossypium hirsutum HOM05D004191 ORTHO05D004887 4.2e-96 354.8 187 92.0
Gohir.D09G115300 Gossypium hirsutum HOM05D004191 ORTHO05D004887 4.2e-96 354.8 187 92.0
Gorai.006G132900 Gossypium raimondii HOM05D004191 ORTHO05D004887 4.2e-96 354.8 187 92.0
Potri.001G418400 Populus trichocarpa HOM05D004191 ORTHO05D004887 4.2e-96 354.8 187 92.5
Sabra16G0284100 Salix brachista HOM05D004191 ORTHO05D004887 5.5e-96 354.4 187 92.0
CiPaw.12G126500 Carya illinoinensis HOM05D004191 ORTHO05D004887 7.1e-96 354.0 187 91.4
CSS0028201 Camellia sinensis var. sinensis HOM05D004191 ORTHO05D004887 2.1e-95 352.4 187 92.5
Cc05_g13280 Coffea canephora HOM05D004191 ORTHO05D004887 2.1e-95 352.4 187 90.9
Lj1A865T18 Lonicera japonica HOM05D004191 ORTHO05D004887 2.1e-95 352.4 187 90.4
Ciclev10009626m.g Citrus clementina HOM05D004191 ORTHO05D004887 2.7e-95 352.1 187 90.9
FAN11G1314 Fragaria x ananassa HOM05D004191 ORTHO05D004887 2.7e-95 352.1 200 87.0
Lsat_1_v5_gn_7_108481 Lactuca sativa HOM05D004191 ORTHO05D004887 2.7e-95 352.1 187 89.8
PGR031G0276 Punica granatum HOM05D004191 ORTHO05D004887 2.7e-95 352.1 184 92.9
Medtr4g081170 Medicago truncatula HOM05D004191 ORTHO05D004887 3.5e-95 351.7 187 92.0
Oeu032442.1 Olea europaea HOM05D004191 ORTHO05D004887 3.5e-95 351.7 187 90.9
GSVIVG01002004001 Vitis vinifera HOM05D004191 ORTHO05D004887 3.5e-95 351.7 187 91.4
Cpa.g.sc97.62 Carica papaya HOM05D004191 ORTHO05D004887 6.0e-95 350.9 187 90.4
Manes.03G123300 Manihot esculenta HOM05D004191 ORTHO05D004887 6.0e-95 350.9 187 91.4
TPR.G24299 Trifolium pratense HOM05D004191 ORTHO05D004887 6.0e-95 350.9 186 93.0
COL.COLO4_05062 Corchorus olitorius HOM05D004191 ORTHO05D004887 7.9e-95 350.5 187 90.9
Eucgr.F03430 Eucalyptus grandis HOM05D004191 ORTHO05D004887 7.9e-95 350.5 182 94.0
ATR0609G026 Amborella trichopoda HOM05D004191 ORTHO05D004887 1.0e-94 350.1 187 90.9
Nitab4.5_0002838g0150 Nicotiana tabacum HOM05D004191 ORTHO05D004887 1.3e-94 349.7 187 90.9
ECA236G4841 Erigeron canadensis HOM05D004191 ORTHO05D004887 1.8e-94 349.4 187 88.8
Nitab4.5_0005420g0050 Nicotiana tabacum HOM05D004191 ORTHO05D004887 1.8e-94 349.4 187 90.4
Rhsim12G0150700 Rhododendron simsii HOM05D004191 ORTHO05D004887 1.8e-94 349.4 187 89.3
Dinv40713 Davidia involucrata HOM05D004191 ORTHO05D004887 2.3e-94 349.0 187 91.4
HanXRQChr02g0054141 Helianthus annuus HOM05D004191 ORTHO05D004887 2.3e-94 349.0 187 89.3
MBI02_g10101_MAGBIO Magnolia biondii HOM05D004191 ORTHO05D004887 2.3e-94 349.0 187 90.4
vmacro16476 Vaccinium macrocarpon HOM05D004191 ORTHO05D004887 2.3e-94 349.0 187 89.3
Actinidia34670 Actinidia chinensis HOM05D004191 ORTHO05D004887 3.9e-94 348.2 187 90.9
TAR371G0103 Trochodendron aralioides HOM05D004191 ORTHO05D004887 3.9e-94 348.2 187 89.8
Peaxi162Scf00082g00016 Petunia axillaris HOM05D004191 ORTHO05D004887 5.1e-94 347.8 187 90.4
Aqoxy4G00334 Aquilegia oxysepala HOM05D004191 ORTHO05D004887 8.7e-94 347.1 187 89.8
PSO675G8300 Papaver somniferum HOM05D004191 ORTHO05D004887 8.7e-94 347.1 187 88.8
PGSC0003DMG400005405 Solanum tuberosum HOM05D004191 ORTHO05D004887 8.7e-94 347.1 187 89.3
MELO3C018102.2 Cucumis melo HOM05D004191 ORTHO05D004887 1.1e-93 346.7 187 90.4
CsaV3_3G023130 Cucumis sativus L. HOM05D004191 ORTHO05D004887 1.1e-93 346.7 187 90.4
Sed0000628 Sechium edule HOM05D004191 ORTHO05D004887 1.1e-93 346.7 187 89.3
THA.LOC104799884 Tarenaya hassleriana HOM05D004191 ORTHO05D004887 1.9e-93 345.9 187 88.8
TWI39G0061 Tripterygium wilfordii HOM05D004191 ORTHO05D004887 1.9e-93 345.9 187 89.3
Aa31LG3G10650 Aethionema arabicum HOM05D004191 ORTHO05D004887 2.5e-93 345.5 187 89.3
TAR626G0300 Trochodendron aralioides HOM05D004191 ORTHO05D004887 2.5e-93 345.5 187 89.3
SpUn0117_0020 Schrenkiella parvula HOM05D004191 ORTHO05D004887 3.3e-93 345.1 187 88.8
Solyc10g006490.3 Solanum lycopersicum HOM05D004191 ORTHO05D004887 3.3e-93 345.1 187 89.8
AL8G30180 Arabidopsis lyrata HOM05D004191 ORTHO05D004887 4.3e-93 344.7 187 89.3
SGA_v2.0_scaffold416G51230 Striga asiatica HOM05D004191 ORTHO05D004887 9.6e-93 343.6 187 86.6
AT5G54750 Arabidopsis thaliana HOM05D004191 ORTHO05D004887 1.3e-92 343.2 187 88.2
CARHR268090 Cardamine hirsuta HOM05D004191 ORTHO05D004887 1.3e-92 343.2 187 88.8
PSO170G1932 Papaver somniferum HOM05D004191 ORTHO05D004887 1.3e-92 343.2 187 88.2
Carub.0008s1502 Capsella rubella HOM05D004191 ORTHO05D004887 1.6e-92 342.8 187 88.2
Hma1.2p1_0049F.1_g028640 Hydrangea macrophylla HOM05D004191 ORTHO05D004887 1.6e-92 342.8 186 88.7
Oeu007633.1 Olea europaea HOM05D004191 ORTHO05D004887 1.6e-92 342.8 196 86.7
Solyc01g096530.3 Solanum lycopersicum HOM05D004191 ORTHO05D004887 1.6e-92 342.8 187 88.2
Sopen01g040260 Solanum pennellii HOM05D004191 ORTHO05D004887 1.6e-92 342.8 187 88.8
Migut.H01854 Erythranthe guttata HOM05D004191 ORTHO05D004887 2.1e-92 342.4 187 86.6
Sp4g10480 Schrenkiella parvula HOM05D004191 ORTHO05D004887 2.1e-92 342.4 187 87.7
Medtr8g027700 Medicago truncatula HOM05D004191 ORTHO05D004887 2.8e-92 342.0 187 89.3
PGR083G1136 Punica granatum HOM05D004191 ORTHO05D004887 2.8e-92 342.0 193 87.6
Hund11592 Selenicereus undatus HOM05D004191 ORTHO05D004887 2.8e-92 342.0 187 87.7
CAN.G134.12 Capsicum annuum HOM05D004191 ORTHO05D004887 3.7e-92 341.7 187 87.7
Thhalv10019192m.g Eutrema salsugineum HOM05D004191 ORTHO05D004887 3.7e-92 341.7 187 87.7
SalBow7G2717 Salvia bowleyana HOM05D004191 ORTHO05D004887 3.7e-92 341.7 187 86.6
HPP92_013205 Vanilla planifolia HOM05D001003 ORTHO05D004887 4.8e-92 341.3 186 87.1
Eucgr.F00980 Eucalyptus grandis HOM05D004191 ORTHO05D004887 6.2e-92 340.9 187 87.2
Sed0012224 Sechium edule HOM05D004191 ORTHO05D004887 8.2e-92 340.5 187 87.7
BcaB07g31034 Brassica carinata HOM05D004191 ORTHO05D004887 2.4e-91 339.0 187 86.6
A09p20070 Brassica napus HOM05D004191 ORTHO05D004887 2.4e-91 339.0 187 86.6
C09p25460 Brassica napus HOM05D004191 ORTHO05D004887 2.4e-91 339.0 187 86.6
BraA09t37620Z Brassica rapa HOM05D004191 ORTHO05D004887 2.4e-91 339.0 187 86.6
MSTRG.6892 Avicennia marina HOM05D004191 ORTHO05D004887 4.1e-91 338.2 187 86.6
ATR0109G002 Amborella trichopoda HOM05D004191 ORTHO05D004887 5.3e-91 337.8 187 87.2
Migut.M01809 Erythranthe guttata HOM05D004191 ORTHO05D004887 5.3e-91 337.8 181 89.0
Ah.02g116780 Amaranthus hybridus HOM05D004191 ORTHO05D004887 9.0e-91 337.0 187 85.0
Sc22g0000820 Simmondsia chinensis HOM05D004191 ORTHO05D004887 1.5e-90 336.3 187 86.1
EL10Ac5g13057 Beta vulgaris HOM05D004191 ORTHO05D004887 2.0e-90 335.9 187 85.0
CAN.G1110.10 Capsicum annuum HOM05D004191 ORTHO05D004887 2.6e-90 335.5 201 83.6
SGA_v2.0_scaffold24G10288 Striga asiatica HOM05D004191 ORTHO05D004887 4.5e-90 334.7 187 84.5
Zm00001eb433090 Zea mays HOM05D004191 ORTHO05D004887 1.3e-89 333.2 187 85.6
PSO782G4612 Papaver somniferum HOM05D004191 ORTHO05D004887 1.7e-89 332.8 203 81.3
MSTRG.12958 Avicennia marina HOM05D004191 ORTHO05D004887 2.2e-89 332.4 187 84.5
Sopen10g002440 Solanum pennellii HOM05D004191 ORTHO05D004887 2.9e-89 332.0 206 81.1
Zm00001eb067130 Zea mays HOM05D004191 ORTHO05D004887 2.9e-89 332.0 187 85.0
arahy.Tifrunner.gnm1.ann1.T6DWBF Arachis hypogaea HOM05D004191 ORTHO05D004887 3.8e-89 331.6 187 85.0
CDE02G0163 Ceratophyllum demersum HOM05D004191 ORTHO05D004887 6.5e-89 330.9 187 82.9
Os03g0402000 Oryza sativa ssp. japonica HOM05D004191 ORTHO05D004887 6.5e-89 330.9 188 84.6
Os07g0642300 Oryza sativa ssp. japonica HOM05D004191 ORTHO05D004887 6.5e-89 330.9 188 84.6
TWI38G1569 Tripterygium wilfordii HOM05D004191 ORTHO05D004887 6.5e-89 330.9 208 79.8
BolC9t55449H Brassica oleracea HOM05D004191 ORTHO05D004887 5.5e-88 327.8 206 79.1
Sc15g0001730 Simmondsia chinensis HOM05D004191 ORTHO05D004887 5.5e-88 327.8 187 84.0
ClCG05G014740 Citrullus lanatus HOM05D004191 ORTHO05D004887 4.6e-87 324.7 241 70.5
unitig_0.g2386 Utricularia gibba HOM05D004191 ORTHO05D004887 1.8e-86 322.8 183 85.2
Hund24114 Selenicereus undatus HOM05D004191 ORTHO05D004887 3.3e-85 318.5 211 75.8
Manes.15G076000 Manihot esculenta HOM05D004191 ORTHO05D004887 5.7e-85 317.8 185 81.6
Eucgr.F00978 Eucalyptus grandis HOM05D004191 ORTHO05D004887 1.8e-83 312.8 169 88.2
Lsat_1_v5_gn_5_5821 Lactuca sativa HOM05D004191 ORTHO05D004887 4.1e-83 311.6 175 83.4
Nn1g08677 Nelumbo nucifera HOM05D004191 ORTHO05D004887 1.5e-82 309.7 167 88.6
Mapoly0006s0106 Marchantia polymorpha HOM05D004191 ORTHO05D004887 2.6e-82 308.9 187 77.5
SMO165G0074 Selaginella moellendorffii HOM05D004191 ORTHO05D004887 3.2e-80 302.0 187 75.9
AagrBONN_evm.TU.Sc2ySwM_344.5600 Anthoceros agrestis HOM05D004191 ORTHO05D004887 9.4e-80 300.4 181 75.7
AagrBONN_evm.TU.Sc2ySwM_344.5601 Anthoceros agrestis HOM05D004191 ORTHO05D004887 9.4e-80 300.4 181 75.7
AagrBONN_evm.TU.Sc2ySwM_362.1587 Anthoceros agrestis HOM05D004191 ORTHO05D004887 1.8e-78 296.2 181 74.6
CBR_g9060 Chara braunii HOM05D004191 ORTHO05D004887 1.1e-77 293.5 186 74.2
Peaxi162Scf01434g00020 Petunia axillaris HOM05D004191 ORTHO05D004887 2.5e-77 292.4 187 79.1
BcaB07g30600 Brassica carinata HOM05D004191 ORTHO05D004887 9.7e-77 290.4 186 80.1
AagrBONN_evm.TU.Sc2ySwM_344.5599 Anthoceros agrestis HOM05D004191 ORTHO05D004887 3.7e-76 288.5 172 76.7
Nitab4.5_0002342g0090 Nicotiana tabacum HOM05D004191 ORTHO05D004887 1.4e-75 286.6 187 77.0
BcaC04g21960 Brassica carinata HOM05D004191 ORTHO05D004887 6.9e-75 284.3 154 88.3
arahy.Tifrunner.gnm1.ann1.N3PQ25 Arachis hypogaea HOM05D004191 ORTHO05D004887 9.1e-75 283.9 187 75.9
Hma1.2p1_0774F.1_g216345 Hydrangea macrophylla HOM05D004191 ORTHO05D004887 1.5e-74 283.1 159 85.5
Nitab4.5_0002229g0200 Nicotiana tabacum HOM05D004191 ORTHO05D004887 3.4e-74 282.0 187 76.5
Pp3c6_29730 Physcomitrium patens HOM05D004191 ORTHO05D004887 7.7e-74 280.8 172 75.0
Dinv22301 Davidia involucrata HOM05D004191 ORTHO05D004887 1.7e-73 279.6 149 91.3
Peaxi162Scf01475g00001 Petunia axillaris HOM05D004191 ORTHO05D004887 6.7e-70 267.7 187 74.3
AUR62039960 Chenopodium quinoa HOM05D004191 ORTHO05D004887 8.8e-70 267.3 148 85.1
Cpa.g.sc2.173 Carica papaya HOM05D004191 ORTHO05D004887 9.1e-67 257.3 214 58.9
AUR62007507 Chenopodium quinoa HOM05D004191 ORTHO05D004887 4.7e-63 245.0 158 73.4
Cre03.g145607 Chlamydomonas reinhardtii HOM05D004191 ORTHO05D004887 1.0e-62 243.8 185 60.5
Peaxi162Scf08257g00003 Petunia axillaris HOM05D004191 ORTHO05D004887 1.4e-62 243.4 187 69.5
PGSC0003DMG400029125 Solanum tuberosum HOM05D004191 ORTHO05D004887 2.8e-60 235.7 187 65.2
Sp2g07630 Schrenkiella parvula HOM05D004191 ORTHO05D004887 4.5e-58 228.4 124 88.7
AagrBONN_evm.TU.Sc2ySwM_362.1580 Anthoceros agrestis HOM05D004191 ORTHO05D004887 7.5e-53 211.1 127 75.6
Cfa020410 Carpinus fangiana HOM05D004191 ORTHO05D004887 1.1e-51 207.2 103 94.2
Psat7g161320 Pisum sativum HOM05D004191 ORTHO05D004887 3.1e-51 205.7 139 73.4
PRCOL_00004686 Prasinoderma coloniale HOM05D004191 ORTHO05D004887 3.8e-49 198.7 167 53.9
COL.COLO4_37956 Corchorus olitorius HOM05D004191 ORTHO05D004887 7.2e-48 194.5 98 90.8
CDE05G2537 Ceratophyllum demersum HOM05D004191 ORTHO05D004887 8.0e-47 191.0 106 86.8
MCO14G457 Micromonas commoda HOM05D004191 ORTHO05D004887 8.0e-47 191.0 175 53.1
TWI38G1856 Tripterygium wilfordii HOM05D004191 ORTHO05D004887 1.7e-44 183.3 103 82.5
AUR62030012 Chenopodium quinoa HOM05D004191 ORTHO05D004887 2.8e-44 182.6 181 56.4
SEGI_28528 Sequoiadendron giganteum HOM05D004191 ORTHO05D004887 2.9e-41 172.6 98 78.6
Nn5g28123 Nelumbo nucifera HOM05D004191 ORTHO05D004887 4.4e-37 158.7 85 91.8
HanXRQChr11g0332951 Helianthus annuus HOM05D004191 ORTHO05D004887 6.4e-28 128.3 142 52.1
Pp3c2_32190 Physcomitrium patens HOM05D004191 ORTHO05D004887 1.3e-20 104.0 68 67.6
Cfa020409 Carpinus fangiana HOM05D004191 ORTHO05D004887 1.6e-18 97.1 52 92.3
COL.COLO4_37955 Corchorus olitorius HOM05D004191 ORTHO05D004887 2.1e-18 96.7 52 94.2
Haze_09622 Corylus avellana HOM05D004191 ORTHO05D004887 4.3e-16 89.0 49 89.8
Haze_09618 Corylus avellana HOM05D004191 ORTHO05D004887 5.2e-14 82.0 45 88.9
Actinidia19733 Actinidia chinensis HOM05D004191 ORTHO05D004887 2.6e-13 79.7 41 90.2
Medtr4g027400 Medicago truncatula HOM05D004191 ORTHO05D004887 2.6e-13 79.7 47 83.0
Rhsim01G0090000 Rhododendron simsii HOM05D004191 ORTHO05D004887 2.9e-12 76.3 70 61.4
Ah.07g199550 Amaranthus hybridus HOM05D004191 ORTHO05D004887 1.4e-11 73.9 41 82.9
Ah.12g056770 Amaranthus hybridus HOM05D004191 ORTHO05D004887 5.4e-11 72.0 68 52.9
Ah.07g199480 Amaranthus hybridus HOM05D004191 ORTHO05D060174 1.2e-10 70.9 39 79.5


User provided reference genes

Program Settings