Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.011G133700 Phaseolus vulgaris HOM05D006335 ORTHO05D007617 6.6e-91 337.4 179 100.0
Phvul.011G131000 Phaseolus vulgaris HOM05D006335 ORTHO05D007617 6.8e-88 327.4 179 98.3
Phvul.011G133000 Phaseolus vulgaris HOM05D006335 ORTHO05D007617 1.7e-86 322.8 179 96.1
VMungo1127G1181 Vigna mungo HOM05D006335 ORTHO05D007617 3.1e-72 275.4 192 79.7
VMungo1127G1825 Vigna mungo HOM05D006335 ORTHO05D007617 6.9e-72 274.2 179 83.8
Glyma.15G020200 Glycine max HOM05D006335 ORTHO05D007617 4.2e-61 238.4 186 72.0
Glyma.06G277900 Glycine max HOM05D006335 ORTHO05D007617 3.9e-59 231.9 186 71.0
Ca_18884_v3 Cicer arietinum L. HOM05D006335 ORTHO05D007617 4.6e-52 208.4 179 62.6
Psat7g165440 Pisum sativum HOM05D006335 ORTHO05D007617 3.3e-50 202.2 186 57.5
Psat7g165600 Pisum sativum HOM05D006335 ORTHO05D007617 3.3e-50 202.2 186 57.5
Medtr4g079460 Medicago truncatula HOM05D006335 ORTHO05D007617 4.3e-50 201.8 173 58.4
TPR.G28309 Trifolium pratense HOM05D006335 ORTHO05D007617 4.8e-49 198.4 178 59.0
Lj3g0002577 Lotus japonicus HOM05D006335 ORTHO05D007617 2.6e-47 192.6 194 60.3
Medtr4g079810 Medicago truncatula HOM05D006335 ORTHO05D007617 5.9e-47 191.4 178 56.2
Glyma.06G279000 Glycine max HOM05D006335 ORTHO05D007617 9.4e-45 184.1 121 78.5
Lalb_Chr01g0005971 Lupinus albus HOM05D006335 ORTHO05D007617 1.1e-42 177.2 184 56.5
arahy.Tifrunner.gnm1.ann1.IJ2KIS Arachis hypogaea HOM05D006335 ORTHO05D007617 1.3e-38 163.7 204 51.5
arahy.Tifrunner.gnm1.ann1.Y7YMH3 Arachis hypogaea HOM05D006335 ORTHO05D007617 1.1e-37 160.6 202 51.5
Glyma.12G127400 Glycine max HOM05D006335 ORTHO05D007617 1.1e-37 160.6 137 67.9
arahy.Tifrunner.gnm1.ann1.E7WT9K Arachis hypogaea HOM05D006335 ORTHO05D007617 1.8e-35 153.3 205 47.3
arahy.Tifrunner.gnm1.ann1.DF2I7I Arachis hypogaea HOM05D006335 ORTHO05D007617 1.7e-25 120.2 204 41.2
FAN05G4039 Fragaria x ananassa HOM05D006335 ORTHO05D007617 7.0e-24 114.8 124 50.0
FvH4_6g27231 Fragaria vesca HOM05D006335 ORTHO05D007617 2.0e-23 113.2 106 57.5
MD09G1238400 Malus domestica HOM05D006335 ORTHO05D007617 2.0e-23 113.2 181 40.3
FAN09G0462 Fragaria x ananassa HOM05D006335 ORTHO05D007617 3.5e-23 112.5 124 49.2
QL08p041551 Quercus lobata HOM05D006335 ORTHO05D007617 4.5e-23 112.1 168 42.3
FvH4_6g27220 Fragaria vesca HOM05D006335 ORTHO05D007617 1.3e-22 110.5 124 49.2
FAN14G0983 Fragaria x ananassa HOM05D006335 ORTHO05D007617 2.9e-22 109.4 122 49.2
RcHm_v2.0_Chr2g0129291 Rosa chinensis HOM05D006335 ORTHO05D007617 5.0e-22 108.6 159 42.1
Hma1.2p1_0178F.1_g078870 Hydrangea macrophylla HOM05D006335 ORTHO05D007617 6.5e-22 108.2 130 45.4
Duzib147G1311 Durio zibethinus HOM05D006335 ORTHO05D007617 1.9e-21 106.7 109 48.6
CiPaw.04G132900 Carya illinoinensis HOM05D006335 ORTHO05D007617 3.2e-21 105.9 100 53.0
Prupe.3G117900 Prunus persica HOM05D006335 ORTHO05D007617 3.2e-21 105.9 119 49.6
Actinidia04365 Actinidia chinensis HOM05D006335 ORTHO05D007617 4.2e-21 105.5 175 39.4
RcHm_v2.0_Chr2g0129361 Rosa chinensis HOM05D006335 ORTHO05D007617 4.2e-21 105.5 121 45.5
Thecc.01G149900 Theobroma cacao HOM05D006335 ORTHO05D007617 1.4e-19 100.5 110 46.4
A08p36030 Brassica napus HOM05D006335 ORTHO05D007617 2.3e-19 99.8 133 39.8
MD08G1181200 Malus domestica HOM05D006335 ORTHO05D007617 2.3e-19 99.8 95 55.8
TWI59G1087 Tripterygium wilfordii HOM05D006335 ORTHO05D007617 2.3e-19 99.8 121 43.0
Manes.01G133300 Manihot esculenta HOM05D006335 ORTHO05D007617 3.0e-19 99.4 197 38.1
BraA08t35509Z Brassica rapa HOM05D006335 ORTHO05D007617 5.2e-19 98.6 136 40.4
Prupe.3G121400 Prunus persica HOM05D006335 ORTHO05D007617 6.8e-19 98.2 125 42.4
COL.COLO4_33572 Corchorus olitorius HOM05D006335 ORTHO05D007617 8.8e-19 97.8 100 48.0
BolC8t47040H Brassica oleracea HOM05D006335 ORTHO05D007617 1.2e-18 97.4 136 39.7
BcaC07g36801 Brassica carinata HOM05D006335 ORTHO05D007617 1.5e-18 97.1 135 40.0
Thhalv10009758m.g Eutrema salsugineum HOM05D006335 ORTHO05D007617 1.5e-18 97.1 107 43.9
CANSAT64G2990 Cannabis sativa HOM05D006335 ORTHO05D007617 2.6e-18 96.3 115 42.6
Cc05_g08270 Coffea canephora HOM05D006335 ORTHO05D007617 4.4e-18 95.5 165 40.0
AT1G06320 Arabidopsis thaliana HOM05D006335 ORTHO05D007617 5.7e-18 95.1 174 34.5
BcaC07g42074 Brassica carinata HOM05D006335 ORTHO05D007617 5.7e-18 95.1 115 40.9
Eucgr.K01124 Eucalyptus grandis HOM05D006335 ORTHO05D007617 5.7e-18 95.1 177 36.7
C08p02480 Brassica napus HOM05D006335 ORTHO05D007617 9.8e-18 94.4 135 39.3
Sp1g05110 Schrenkiella parvula HOM05D006335 ORTHO05D007617 2.2e-17 93.2 113 40.7
Lj1A685T55 Lonicera japonica HOM05D006335 ORTHO05D007617 2.8e-17 92.8 101 48.5
VMungo1215G2452 Vigna mungo HOM05D006335 ORTHO05D007617 2.8e-17 92.8 85 63.5
CARHR005880 Cardamine hirsuta HOM05D006335 ORTHO05D007617 3.7e-17 92.4 139 34.5
Gohir.A09G001600 Gossypium hirsutum HOM05D006335 ORTHO05D007617 6.3e-17 91.7 101 50.5
Sopen12g006210 Solanum pennellii HOM05D006335 ORTHO05D007617 8.3e-17 91.3 110 45.5
TAR626G0568 Trochodendron aralioides HOM05D006335 ORTHO05D007617 8.3e-17 91.3 153 37.3
Solyc12g010850.1 Solanum lycopersicum HOM05D006335 ORTHO05D007617 1.1e-16 90.9 110 45.5
C08p51300 Brassica napus HOM05D006335 ORTHO05D007617 1.8e-16 90.1 114 36.8
BolC8t52656H Brassica oleracea HOM05D006335 ORTHO05D007617 1.8e-16 90.1 114 36.8
Gorai.006G001500 Gossypium raimondii HOM05D006335 ORTHO05D007617 2.4e-16 89.7 99 50.5
Sabra05G0153900 Salix brachista HOM05D006335 ORTHO05D007617 3.1e-16 89.4 101 45.5
Sed0026533 Sechium edule HOM05D006335 ORTHO05D007617 4.1e-16 89.0 120 44.2
Cpa.g.sc209.36 Carica papaya HOM05D006335 ORTHO05D007617 5.4e-16 88.6 117 41.0
Gohir.D09G001300 Gossypium hirsutum HOM05D006335 ORTHO05D007617 5.4e-16 88.6 99 49.5
RcHm_v2.0_Chr2g0129301 Rosa chinensis HOM05D006335 ORTHO05D007617 2.0e-15 86.7 121 40.5
AL1G16330 Arabidopsis lyrata HOM05D006335 ORTHO05D007617 2.7e-15 86.3 189 31.7
A09p67040 Brassica napus HOM05D006335 ORTHO05D007617 2.7e-15 86.3 105 39.0
BraA09t42038Z Brassica rapa HOM05D006335 ORTHO05D007617 2.7e-15 86.3 105 39.0
Glyma.06G279800 Glycine max HOM05D006335 ORTHO05D007617 2.7e-15 86.3 49 85.7
Potri.005G202500 Populus trichocarpa HOM05D006335 ORTHO05D007617 5.9e-15 85.1 99 46.5
SHI18965 Sapria himalayana HOM05D006335 ORTHO05D007617 5.9e-15 85.1 99 45.5
Sc05g0006750 Simmondsia chinensis HOM05D006335 ORTHO05D007617 5.9e-15 85.1 130 43.8
THA.LOC104816084 Tarenaya hassleriana HOM05D006335 ORTHO05D007617 5.9e-15 85.1 129 41.1
Nn4g25571 Nelumbo nucifera HOM05D006335 ORTHO05D007617 7.7e-15 84.7 106 44.3
Carub.0001s0568 Capsella rubella HOM05D006335 ORTHO05D007617 1.0e-14 84.3 111 42.3
Nitab4.5_0008326g0020 Nicotiana tabacum HOM05D006335 ORTHO05D007617 1.7e-14 83.6 113 41.6
PGR142G3040 Punica granatum HOM05D006335 ORTHO05D007617 2.9e-14 82.8 113 44.2
BcaB03g13422 Brassica carinata HOM05D006335 ORTHO05D007617 5.0e-14 82.0 108 38.9
Nitab4.5_0000537g0060 Nicotiana tabacum HOM05D006335 ORTHO05D007617 6.5e-14 81.6 105 41.0
TAR624G0615 Trochodendron aralioides HOM05D006335 ORTHO05D007617 6.5e-14 81.6 166 35.5
TAR633G2592 Trochodendron aralioides HOM05D006335 ORTHO05D007617 8.5e-14 81.3 100 44.0
Aqoxy2G02728 Aquilegia oxysepala HOM05D006335 ORTHO05D007617 1.1e-13 80.9 98 43.9
FAN14G0259 Fragaria x ananassa HOM05D006335 ORTHO05D007617 1.1e-13 80.9 73 56.2
FAN05G3171 Fragaria x ananassa HOM05D006335 ORTHO05D007617 1.6e-12 77.0 107 45.8
Aa31LG1G7320 Aethionema arabicum HOM05D006335 ORTHO05D007617 4.7e-12 75.5 104 43.3
Aqoxy1G02076 Aquilegia oxysepala HOM05D006335 ORTHO05D007617 8.0e-12 74.7 118 36.4
Hund07816 Selenicereus undatus HOM05D006335 ORTHO05D007617 1.4e-11 73.9 113 39.8
Dinv15181 Davidia involucrata HOM05D006335 ORTHO05D007617 5.2e-11 72.0 104 41.3
Thecc.04G299900 Theobroma cacao HOM05D006335 ORTHO05D007617 6.8e-11 71.6 123 39.8
GSVIVG01034999001 Vitis vinifera HOM05D006335 ORTHO05D007617 1.5e-10 70.5 114 37.7
PGSC0003DMG400007858 Solanum tuberosum HOM05D006335 ORTHO05D007617 2.6e-10 69.7 110 39.1
AUR62038933 Chenopodium quinoa HOM05D006335 ORTHO05D007617 4.4e-10 68.9 114 37.7
Haze_13357 Corylus avellana HOM05D006335 ORTHO05D007617 4.4e-10 68.9 123 38.2
HanXRQChr16g0530371 Helianthus annuus HOM05D006335 ORTHO05D007617 4.4e-10 68.9 76 44.7
Dinv15448 Davidia involucrata HOM05D006335 ORTHO05D007617 7.5e-10 68.2 104 37.5
AUR62039006 Chenopodium quinoa HOM05D006335 ORTHO05D007617 1.3e-09 67.4 114 36.8
Lsat_1_v5_gn_8_120600 Lactuca sativa HOM05D006335 ORTHO05D007617 2.8e-09 66.2 98 40.8
FAN16G3721 Fragaria x ananassa HOM05D022579 ORTHO05D007617 4.9e-09 65.5 49 61.2
ECA246G1597 Erigeron canadensis HOM05D006335 ORTHO05D007617 6.3e-09 65.1 97 37.1
Migut.D02221 Erythranthe guttata HOM05D006335 ORTHO05D007617 1.1e-08 64.3 106 37.7
FAN21G0105 Fragaria x ananassa HOM05D006335 ORTHO05D007617 2.4e-08 63.2 107 42.1
vmacro14418 Vaccinium macrocarpon HOM05D000550 ORTHO05D000400 3.1e-08 62.8 83 41.0
Ciclev10016971m.g Citrus clementina HOM05D006335 ORTHO05D007617 1.2e-07 60.8 65 46.2
Zm00001eb014790 Zea mays HOM05D006335 ORTHO05D007617 2.0e-07 60.1 106 31.1
Aqoxy3G00772 Aquilegia oxysepala HOM05D006335 ORTHO05D007617 2.7e-07 59.7 92 34.8
ECA238G3583 Erigeron canadensis HOM05D006335 ORTHO05D007617 2.7e-07 59.7 68 44.1
PSO170G4547 Papaver somniferum HOM05D006335 ORTHO05D007617 3.5e-07 59.3 120 33.3
COL.COLO4_34622 Corchorus olitorius HOM05D006335 ORTHO05D007617 1.7e-06 57.0 115 36.5
Os03g0308600 Oryza sativa ssp. japonica HOM05D006335 ORTHO05D007617 3.8e-06 55.8 127 30.7
BcaC07g42071 Brassica carinata HOM05D006335 ORTHO05D007617 6.6e-06 55.1 61 45.9
unitig_46.g18233 Utricularia gibba HOM05D006335 ORTHO05D007617 8.6e-06 54.7 101 38.6


User provided reference genes

Program Settings