Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.011G133545 Phaseolus vulgaris HOM05D006910 ORTHO05D008937 4.9e-171 604.7 327 100.0
VMungo0720G1174 Vigna mungo HOM05D006910 ORTHO05D008937 1.5e-140 503.4 327 85.9
Glyma.20G199800 Glycine max HOM05D006910 ORTHO05D008937 5.5e-122 441.8 328 76.2
Glyma.10G190700 Glycine max HOM05D006910 ORTHO05D008937 3.5e-116 422.5 326 75.2
Lj5g0027299 Lotus japonicus HOM05D006910 ORTHO05D008937 5.6e-90 335.5 334 62.9
Psat6g131280 Pisum sativum HOM05D006910 ORTHO05D008937 1.8e-72 277.3 332 57.5
Medtr1g073230 Medicago truncatula HOM05D006910 ORTHO05D008937 2.6e-71 273.5 328 55.8
arahy.Tifrunner.gnm1.ann1.YFRU1Z Arachis hypogaea HOM05D006910 ORTHO05D008937 9.5e-66 255.0 332 54.5
arahy.Tifrunner.gnm1.ann1.DX8ZNF Arachis hypogaea HOM05D006910 ORTHO05D008937 8.9e-64 248.4 332 53.9
TPR.G18548 Trifolium pratense HOM05D006910 ORTHO05D008937 9.6e-58 228.4 335 50.7
Manes.03G158500 Manihot esculenta HOM05D006910 ORTHO05D008937 6.9e-56 222.2 322 51.6
Ca_09799_v3 Cicer arietinum L. HOM05D006910 ORTHO05D008937 9.0e-56 221.9 334 50.9
QL06p021124 Quercus lobata HOM05D006910 ORTHO05D008937 9.0e-56 221.9 328 50.3
Prupe.1G049000 Prunus persica HOM05D006910 ORTHO05D008937 1.2e-55 221.5 314 49.4
Lalb_Chr06g0169541 Lupinus albus HOM05D006910 ORTHO05D008937 5.4e-53 212.6 334 47.6
Thecc.04G265400 Theobroma cacao HOM05D006910 ORTHO05D008937 1.3e-51 208.0 319 48.0
Haze_11463 Corylus avellana HOM05D006910 ORTHO05D008937 1.7e-51 207.6 344 45.3
Ciclev10004771m.g Citrus clementina HOM05D006910 ORTHO05D008937 5.1e-51 206.1 337 46.0
Atru.chr4.1910 Acer truncatum HOM05D006910 ORTHO05D008937 3.3e-50 203.4 332 48.5
CiPaw.01G177500 Carya illinoinensis HOM05D006910 ORTHO05D008937 1.3e-49 201.4 266 53.8
Sabra08G0131500 Salix brachista HOM05D006910 ORTHO05D008937 4.0e-48 196.4 332 44.9
Cpa.g.sc59.4 Carica papaya HOM05D006910 ORTHO05D008937 1.2e-47 194.9 323 45.5
Potri.010G065400 Populus trichocarpa HOM05D006910 ORTHO05D008937 7.6e-47 192.2 323 45.2
vmacro15481 Vaccinium macrocarpon HOM05D006910 ORTHO05D008937 1.7e-46 191.0 326 47.9
COL.COLO4_15971 Corchorus olitorius HOM05D006910 ORTHO05D008937 6.4e-46 189.1 315 44.8
Hma1.2p1_0112F.1_g054780 Hydrangea macrophylla HOM05D006910 ORTHO05D008937 1.1e-45 188.3 323 45.2
FAN17G1396 Fragaria x ananassa HOM05D006910 ORTHO05D008937 1.9e-45 187.6 318 45.3
Duzib151G0386 Durio zibethinus HOM05D006910 ORTHO05D008937 9.3e-45 185.3 190 50.5
FAN12G3461 Fragaria x ananassa HOM05D006910 ORTHO05D008937 2.1e-44 184.1 318 37.4
Sabra10G0041700 Salix brachista HOM05D006910 ORTHO05D008937 2.1e-44 184.1 296 47.3
FvH4_4g04670 Fragaria vesca HOM05D006910 ORTHO05D008937 2.7e-44 183.7 319 45.1
Rhsim02G0044100 Rhododendron simsii HOM05D006910 ORTHO05D008937 3.5e-44 183.3 315 46.3
RcHm_v2.0_Chr4g0395481 Rosa chinensis HOM05D006910 ORTHO05D008937 4.6e-44 183.0 320 44.1
FAN22G1859 Fragaria x ananassa HOM05D006910 ORTHO05D008937 6.0e-44 182.6 310 45.2
Nitab4.5_0006344g0050 Nicotiana tabacum HOM05D006910 ORTHO05D008937 7.9e-44 182.2 323 44.0
CSS0021483 Camellia sinensis var. sinensis HOM05D006910 ORTHO05D008937 1.1e-42 178.3 337 41.5
CSS0027831 Camellia sinensis var. sinensis HOM05D006910 ORTHO05D008937 2.5e-42 177.2 324 46.9
EL10Ac3g06675 Beta vulgaris HOM05D006910 ORTHO05D008937 4.3e-42 176.4 320 45.9
Peaxi162Scf00319g00521 Petunia axillaris HOM05D006910 ORTHO05D008937 2.1e-41 174.1 341 41.9
Dinv27116 Davidia involucrata HOM05D006910 ORTHO05D008937 1.8e-40 171.0 333 43.2
PGR031G1888 Punica granatum HOM05D006910 ORTHO05D008937 2.4e-40 170.6 328 43.0
DCAR_027350 Daucus carota HOM05D006910 ORTHO05D008937 5.3e-40 169.5 325 42.5
Nitab4.5_0000355g0050 Nicotiana tabacum HOM05D006910 ORTHO05D008937 5.3e-40 169.5 328 41.2
MD13G1221900 Malus domestica HOM05D006910 ORTHO05D008937 9.0e-40 168.7 329 44.4
MD16G1226800 Malus domestica HOM05D006910 ORTHO05D008937 9.0e-40 168.7 323 42.7
Dinv29800 Davidia involucrata HOM05D006910 ORTHO05D008937 2.0e-39 167.5 221 45.2
Actinidia39932 Actinidia chinensis HOM05D006910 ORTHO05D008937 2.6e-39 167.2 316 44.6
CAN.G638.37 Capsicum annuum HOM05D006910 ORTHO05D008937 4.9e-38 162.9 329 42.6
Cc03_g06380 Coffea canephora HOM05D006910 ORTHO05D008937 6.5e-38 162.5 334 41.6
Eucgr.H00126 Eucalyptus grandis HOM05D006910 ORTHO05D008937 6.5e-38 162.5 230 53.0
Potri.008G172200 Populus trichocarpa HOM05D006910 ORTHO05D008937 6.5e-38 162.5 316 41.8
AUR62015241 Chenopodium quinoa HOM05D006910 ORTHO05D008937 1.4e-37 161.4 315 44.4
PGR031G1691 Punica granatum HOM05D006910 ORTHO05D008937 1.4e-37 161.4 321 42.7
Hund20492 Selenicereus undatus HOM05D006910 ORTHO05D008937 3.2e-37 160.2 321 42.4
Sopen03g001720 Solanum pennellii HOM05D006910 ORTHO05D008937 5.5e-37 159.5 323 43.3
PGSC0003DMG400013458 Solanum tuberosum HOM05D006910 ORTHO05D008937 5.5e-37 159.5 325 43.4
Gorai.011G179800 Gossypium raimondii HOM05D006910 ORTHO05D008937 2.7e-36 157.1 319 41.7
GSVIVG01027919001 Vitis vinifera HOM05D006910 ORTHO05D008937 2.7e-36 157.1 332 42.2
CANSAT78G1020 Cannabis sativa HOM05D006910 ORTHO05D008937 7.9e-36 155.6 316 41.5
Gohir.A10G107300 Gossypium hirsutum HOM05D006910 ORTHO05D008937 3.0e-35 153.7 320 40.6
Lj6C621T3 Lonicera japonica HOM05D006910 ORTHO05D008937 3.9e-35 153.3 324 44.1
Solyc09g090930.3 Solanum lycopersicum HOM05D006910 ORTHO05D008937 1.5e-34 151.4 323 42.4
PGSC0003DMG400001551 Solanum tuberosum HOM05D006910 ORTHO05D008937 2.5e-34 150.6 321 41.4
Sc13g0003110 Simmondsia chinensis HOM05D006910 ORTHO05D008937 9.6e-34 148.7 303 39.9
TWI53G1612 Tripterygium wilfordii HOM05D006910 ORTHO05D008937 9.6e-34 148.7 314 34.1
Gohir.D10G160000 Gossypium hirsutum HOM05D006910 ORTHO05D008937 3.7e-33 146.7 317 41.6
Sopen09g033910 Solanum pennellii HOM05D006910 ORTHO05D008937 4.8e-33 146.4 323 42.1
MSTRG.4175 Avicennia marina HOM05D006910 ORTHO05D008937 3.1e-32 143.7 348 39.1
CAN.G524.13 Capsicum annuum HOM05D006910 ORTHO05D008937 6.9e-32 142.5 337 38.3
Ah.13g074730 Amaranthus hybridus HOM05D006910 ORTHO05D008937 1.2e-31 141.7 300 42.7
Migut.G00574 Erythranthe guttata HOM05D006910 ORTHO05D008937 3.8e-30 136.7 329 38.9
ClCG05G003960 Citrullus lanatus HOM05D006910 ORTHO05D008937 5.0e-30 136.3 319 31.7
A10p02950 Brassica napus HOM05D006910 ORTHO05D008937 2.5e-29 134.0 330 31.5
BolC5t29051H Brassica oleracea HOM05D006910 ORTHO05D008937 9.3e-29 132.1 321 31.5
CsaV3_3G011640 Cucumis sativus L. HOM05D006910 ORTHO05D008937 9.3e-29 132.1 316 33.5
Peaxi162Scf01044g00225 Petunia axillaris HOM05D006910 ORTHO05D008937 2.1e-28 131.0 322 39.8
C05p02700 Brassica napus HOM05D006910 ORTHO05D008937 3.5e-28 130.2 318 30.8
Lsat_1_v5_gn_6_66101 Lactuca sativa HOM05D006910 ORTHO05D008937 6.1e-28 129.4 180 44.4
BraA10t42564Z Brassica rapa HOM05D006910 ORTHO05D008937 1.3e-27 128.3 320 30.9
Nitab4.5_0000592g0430 Nicotiana tabacum HOM05D006910 ORTHO05D008937 6.7e-27 125.9 335 31.0
Sed0015418 Sechium edule HOM05D006910 ORTHO05D008937 6.7e-27 125.9 312 37.2
AL1G14180 Arabidopsis lyrata HOM05D006910 ORTHO05D008937 3.3e-26 123.6 301 31.6
CARHR003870 Cardamine hirsuta HOM05D006910 ORTHO05D008937 7.4e-26 122.5 330 30.0
Sp1g03360 Schrenkiella parvula HOM05D006910 ORTHO05D008937 7.4e-26 122.5 321 30.2
CSS0004989 Camellia sinensis var. sinensis HOM05D006910 ORTHO05D008937 2.8e-25 120.6 191 44.0
Carub.0001s0374 Capsella rubella HOM05D006910 ORTHO05D008937 3.7e-25 120.2 290 30.3
MELO3C006372.2 Cucumis melo HOM05D006910 ORTHO05D008937 3.7e-25 120.2 327 37.0
SGA_v2.0_scaffold67G22680 Striga asiatica HOM05D006910 ORTHO05D008937 4.8e-25 119.8 319 36.1
Thhalv10008199m.g Eutrema salsugineum HOM05D006910 ORTHO05D008937 3.1e-24 117.1 337 29.1
Oeu011215.1 Olea europaea HOM05D006910 ORTHO05D008937 7.7e-23 112.5 301 39.9
AT1G04530 Arabidopsis thaliana HOM05D006910 ORTHO05D008937 1.3e-22 111.7 296 36.1
THA.LOC104801064 Tarenaya hassleriana HOM05D006910 ORTHO05D008937 5.0e-22 109.8 267 29.6
ECA248G3309 Erigeron canadensis HOM05D006910 ORTHO05D008937 3.2e-21 107.1 79 60.8
THA.LOC104826095 Tarenaya hassleriana HOM05D006910 ORTHO05D008937 4.2e-21 106.7 259 36.3
Nitab4.5_0002210g0060 Nicotiana tabacum HOM05D006910 ORTHO05D008937 9.4e-21 105.5 320 28.4
HanXRQChr01g0023021 Helianthus annuus HOM05D006910 ORTHO05D008937 2.7e-20 104.0 72 63.9
unitig_748.g8295 Utricularia gibba HOM05D006910 ORTHO05D008937 6.1e-20 102.8 331 33.5
Lsat_1_v5_gn_1_75580 Lactuca sativa HOM05D006910 ORTHO05D008937 3.9e-19 100.1 180 39.4
SalBow2G0872 Salvia bowleyana HOM05D006910 ORTHO05D008937 5.1e-19 99.8 341 27.6
Aa31LG1G20340 Aethionema arabicum HOM05D006910 ORTHO05D008937 8.8e-19 99.0 325 33.5
Hma1.2p1_0366F.1_g136940 Hydrangea macrophylla HOM05D006910 ORTHO05D008937 9.7e-18 95.5 175 36.6
AUR62018038 Chenopodium quinoa HOM05D006910 ORTHO05D008937 1.3e-17 95.1 166 51.2
Phvul.001G164700 Phaseolus vulgaris HOM05D007706 ORTHO05D009593 8.2e-17 92.4 143 40.6
AUR62025443 Chenopodium quinoa HOM05D006910 ORTHO05D008937 3.1e-16 90.5 124 37.9
Aqoxy5G00146 Aquilegia oxysepala HOM05D007706 ORTHO05D009593 1.5e-15 88.2 171 37.4
C08p52150 Brassica napus HOM05D006910 ORTHO05D008937 3.8e-14 83.6 140 37.1
BolC8t52749H Brassica oleracea HOM05D006910 ORTHO05D008937 6.5e-14 82.8 139 36.7
EL10Ac7g17683 Beta vulgaris HOM05D007706 ORTHO05D009593 5.5e-13 79.7 136 36.0
MBI02_g19811_MAGBIO Magnolia biondii HOM05D006910 ORTHO05D025782 1.6e-12 78.2 117 35.0
PSO541G4538 Papaver somniferum HOM05D007706 ORTHO05D009593 1.8e-11 74.7 181 30.4
PSO782G3886 Papaver somniferum HOM05D006910 ORTHO05D009593 3.9e-11 73.6 323 32.2
Nn3g19784 Nelumbo nucifera HOM05D007706 ORTHO05D009593 6.7e-11 72.8 161 34.2
AUR62008796 Chenopodium quinoa HOM05D007706 ORTHO05D009593 1.1e-10 72.0 114 33.3
Actinidia37550 Actinidia chinensis HOM05D006910 ORTHO05D008937 4.4e-10 70.1 106 44.3
PSO478G1200 Papaver somniferum HOM05D006910 ORTHO05D009593 5.7e-10 69.7 335 32.8
MBI07_g23229_MAGBIO Magnolia biondii HOM05D007706 ORTHO05D009593 7.4e-10 69.3 168 32.1
MBI10_g26041_MAGBIO Magnolia biondii HOM05D007706 ORTHO05D009593 9.7e-10 68.9 160 31.2
ATR0787G077 Amborella trichopoda HOM05D007706 ORTHO05D009593 4.8e-09 66.6 189 29.6
Os04g0496700 Oryza sativa ssp. japonica HOM05D001903 ORTHO05D001847 6.3e-09 66.2 83 41.0
Nitab4.5_0000209g0150 Nicotiana tabacum HOM05D001903 ORTHO05D001847 1.4e-08 65.1 137 35.0
Sabra06G0198700 Salix brachista HOM05D001903 ORTHO05D001847 1.8e-08 64.7 80 41.2
AL2G41400 Arabidopsis lyrata HOM05D001903 ORTHO05D001847 5.3e-08 63.2 128 35.9
PSO675G7213 Papaver somniferum HOM05D007706 ORTHO05D009593 5.3e-08 63.2 163 28.2
Hund26517 Selenicereus undatus HOM05D001903 ORTHO05D001847 5.3e-08 63.2 69 44.9
CSS0007043 Camellia sinensis var. sinensis HOM05D006910 ORTHO05D008937 9.1e-08 62.4 44 56.8
Nn1g02965 Nelumbo nucifera HOM05D007706 ORTHO05D009593 9.1e-08 62.4 144 31.2
Nitab4.5_0008073g0040 Nicotiana tabacum HOM05D009844 ORTHO05D007252 9.1e-08 62.4 40 67.5
Ah.15g092610 Amaranthus hybridus HOM05D007706 ORTHO05D009593 1.2e-07 62.0 195 26.7
AT1G80130 Arabidopsis thaliana HOM05D001903 ORTHO05D001847 1.5e-07 61.6 75 45.3
arahy.Tifrunner.gnm1.ann1.NJ5037 Arachis hypogaea HOM05D007706 ORTHO05D009593 1.5e-07 61.6 43 60.5
SMO118G0200 Selaginella moellendorffii HOM05D006910 ORTHO05D008937 2.0e-07 61.2 95 33.7
PGR044G1481 Punica granatum HOM05D001903 ORTHO05D001847 2.6e-07 60.8 80 42.5
Cfa010644 Carpinus fangiana HOM05D001903 ORTHO05D001847 4.5e-07 60.1 79 39.2
PGR044G1754 Punica granatum HOM05D001903 ORTHO05D001847 5.9e-07 59.7 80 41.2
Rhsim03G0248500 Rhododendron simsii HOM05D001903 ORTHO05D001847 5.9e-07 59.7 74 41.9
Sabra13G0020900 Salix brachista HOM05D000307 ORTHO05D000166 7.7e-07 59.3 46 58.7
Potri.006G254300 Populus trichocarpa HOM05D001903 ORTHO05D001847 1.0e-06 58.9 80 40.0
BcaB05g25297 Brassica carinata HOM05D001903 ORTHO05D001847 1.3e-06 58.5 102 40.2
Duzib138G1124 Durio zibethinus HOM05D007706 ORTHO05D009593 1.3e-06 58.5 41 63.4
HanXRQChr04g0108691 Helianthus annuus HOM05D007706 ORTHO05D009593 1.7e-06 58.2 99 38.4
Aa31LG4G420 Aethionema arabicum HOM05D001903 ORTHO05D001847 3.8e-06 57.0 89 38.2
BcaC03g16002 Brassica carinata HOM05D001903 ORTHO05D001847 3.8e-06 57.0 108 34.3
BolC2t09769H Brassica oleracea HOM05D001903 ORTHO05D001847 3.8e-06 57.0 108 34.3
Cpa.g.sc10.261 Carica papaya HOM05D001903 ORTHO05D001847 3.8e-06 57.0 74 40.5
Ciclev10020687m.g Citrus clementina HOM05D007706 ORTHO05D009593 3.8e-06 57.0 37 64.9
ECA236G0985 Erigeron canadensis HOM05D007706 ORTHO05D009593 3.8e-06 57.0 101 41.6
CANSAT01G1705 Cannabis sativa HOM05D007706 ORTHO05D009593 5.0e-06 56.6 39 59.0
Gohir.A07G204400 Gossypium hirsutum HOM05D007706 ORTHO05D009593 5.0e-06 56.6 35 71.4
Gohir.D07G210400 Gossypium hirsutum HOM05D007706 ORTHO05D009593 5.0e-06 56.6 35 71.4
C02p37590 Brassica napus HOM05D001903 ORTHO05D001847 6.5e-06 56.2 108 34.3
Cfa002482 Carpinus fangiana HOM05D007706 ORTHO05D009593 6.5e-06 56.2 41 58.5
Haze_24704 Corylus avellana HOM05D007706 ORTHO05D009593 6.5e-06 56.2 41 58.5
GSVIVG01028428001 Vitis vinifera HOM05D006910 ORTHO05D008937 6.5e-06 56.2 47 59.6


User provided reference genes

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