Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.011G133515 Phaseolus vulgaris HOM05D012468 ORTHO05D009575 4.6e-106 387.9 193 100.0
VMungo0720G2187 Vigna mungo HOM05D012468 ORTHO05D009575 7.9e-74 280.8 178 80.9
VMungo1215G2213 Vigna mungo HOM05D012468 ORTHO05D009575 5.7e-72 274.6 177 80.2
Glyma.20G200000 Glycine max HOM05D012468 ORTHO05D009575 2.8e-71 272.3 192 76.0
Lj5g0023776 Lotus japonicus HOM05D012468 ORTHO05D009575 1.2e-58 230.3 202 62.9
Ca_09800_v3 Cicer arietinum L. HOM05D012468 ORTHO05D009575 1.3e-44 183.7 256 48.4
Lalb_Chr06g0169531 Lupinus albus HOM05D012468 ORTHO05D009575 2.7e-42 176.0 186 58.6
Medtr1g073260 Medicago truncatula HOM05D012468 ORTHO05D009575 3.6e-42 175.6 295 42.7
Psat6g131320 Pisum sativum HOM05D012468 ORTHO05D009575 7.0e-38 161.4 251 44.2
arahy.Tifrunner.gnm1.ann1.JW933S Arachis hypogaea HOM05D012468 ORTHO05D009575 1.7e-36 156.8 228 47.8
arahy.Tifrunner.gnm1.ann1.U79AWX Arachis hypogaea HOM05D012468 ORTHO05D009575 1.5e-35 153.7 228 46.5
VMungo0251G3369 Vigna mungo HOM05D000412 ORTHO05D000429 2.4e-22 109.8 100 67.0
QL06p021011 Quercus lobata HOM05D008157 ORTHO05D009575 1.3e-20 104.0 181 40.9
Potri.008G172000 Populus trichocarpa HOM05D008157 ORTHO05D009575 6.6e-20 101.7 170 42.4
Potri.010G065666 Populus trichocarpa HOM05D008157 ORTHO05D009575 4.3e-19 99.0 196 37.2
Haze_11459 Corylus avellana HOM05D008157 ORTHO05D009575 7.3e-19 98.2 182 40.1
TPR.G28853 Trifolium pratense HOM05D012468 ORTHO05D009575 1.1e-17 94.4 110 52.7
Sabra10G0041500 Salix brachista HOM05D008157 ORTHO05D009575 2.0e-16 90.1 188 37.2
TWI09G0993 Tripterygium wilfordii HOM05D008157 ORTHO05D009575 2.0e-16 90.1 185 36.8
Dinv27113 Davidia involucrata HOM05D008157 ORTHO05D009575 2.6e-16 89.7 201 36.3
FvH4_4g04630 Fragaria vesca HOM05D008157 ORTHO05D009575 2.6e-16 89.7 145 42.1
TPR.G36140 Trifolium pratense HOM05D012468 ORTHO05D009575 4.4e-16 89.0 85 60.0
FAN12G3964 Fragaria x ananassa HOM05D008157 ORTHO05D009575 7.5e-16 88.2 145 41.4
Sabra08G0131300 Salix brachista HOM05D008157 ORTHO05D009575 9.8e-16 87.8 182 37.4
CANSAT78G1852 Cannabis sativa HOM05D008157 ORTHO05D009575 4.9e-15 85.5 174 37.9
Manes.03G158800 Manihot esculenta HOM05D008157 ORTHO05D009575 4.1e-14 82.4 166 37.3
ClCG05G003990 Citrullus lanatus HOM05D008157 ORTHO05D009575 1.3e-12 77.4 202 33.7
Cc03_g06320 Coffea canephora HOM05D008157 ORTHO05D009575 1.7e-12 77.0 154 37.0
Cc09_g08530 Coffea canephora HOM05D008157 ORTHO05D009575 1.7e-12 77.0 154 37.0
Prupe.1G048400 Prunus persica HOM05D008157 ORTHO05D009575 2.3e-12 76.6 167 35.9
TAR365G0204 Trochodendron aralioides HOM05D008157 ORTHO05D009575 6.6e-12 75.1 200 35.0
Atru.chr4.1914 Acer truncatum HOM05D008157 ORTHO05D009575 1.1e-11 74.3 152 36.8
Sed0015987 Sechium edule HOM05D008157 ORTHO05D009575 2.5e-11 73.2 178 34.3
CiPaw.02G106900 Carya illinoinensis HOM05D008157 ORTHO05D009575 4.3e-11 72.4 178 36.5
EL10Ac3g06669 Beta vulgaris HOM05D008157 ORTHO05D009575 5.6e-11 72.0 156 35.9
CsaV3_3G011680 Cucumis sativus L. HOM05D008157 ORTHO05D009575 5.6e-11 72.0 194 33.5
Rhsim02G0043800 Rhododendron simsii HOM05D008157 ORTHO05D009575 7.3e-11 71.6 192 34.4
Manes.15G045800 Manihot esculenta HOM05D008157 ORTHO05D009575 1.6e-10 70.5 177 35.0
PGR004G0105 Punica granatum HOM05D008157 ORTHO05D009575 4.7e-10 68.9 160 33.1
Thecc.04G264100 Theobroma cacao HOM05D008157 ORTHO05D009575 6.2e-10 68.6 193 33.7
CSS0033147 Camellia sinensis var. sinensis HOM05D008157 ORTHO05D009575 8.1e-10 68.2 153 32.7
RcHm_v2.0_Chr4g0395401 Rosa chinensis HOM05D008157 ORTHO05D009575 8.1e-10 68.2 68 55.9
DCAR_030762 Daucus carota HOM05D008157 ORTHO05D009575 1.4e-09 67.4 127 40.2
Duzib151G0689 Durio zibethinus HOM05D008157 ORTHO05D009575 1.4e-09 67.4 151 34.4
MELO3C006376.2 Cucumis melo HOM05D008157 ORTHO05D009575 2.3e-09 66.6 194 33.5
Gohir.A02G043000 Gossypium hirsutum HOM05D008157 ORTHO05D009575 4.0e-09 65.9 186 32.3
Hma1.2p1_0112F.1_g054760 Hydrangea macrophylla HOM05D008157 ORTHO05D009575 5.2e-09 65.5 94 44.7
Peaxi162Scf00153g01844 Petunia axillaris HOM05D008157 ORTHO05D009575 1.5e-08 63.9 173 32.4
MD16G1226400 Malus domestica HOM05D008157 ORTHO05D009575 2.0e-08 63.5 109 40.4
Hund20495 Selenicereus undatus HOM05D008157 ORTHO05D009575 2.0e-08 63.5 212 32.1
SalBow2G3016 Salvia bowleyana HOM05D008157 ORTHO05D009575 2.6e-08 63.2 188 31.4
Gohir.D02G048700 Gossypium hirsutum HOM05D008157 ORTHO05D009575 3.4e-08 62.8 185 31.4
GSVIVG01028417001 Vitis vinifera HOM05D008157 ORTHO05D009575 3.4e-08 62.8 185 31.4
SGA_v2.0_scaffold67G22685 Striga asiatica HOM05D008157 ORTHO05D009575 4.4e-08 62.4 128 35.2
MBI10_g35435_MAGBIO Magnolia biondii HOM05D008157 ORTHO05D009575 1.3e-07 60.8 191 31.4
Nn1g02959 Nelumbo nucifera HOM05D008157 ORTHO05D009575 2.2e-07 60.1 147 36.7
Duzib138G0893 Durio zibethinus HOM05D014916 ORTHO05D009575 3.7e-07 59.3 171 31.0
Thecc.01G251000 Theobroma cacao HOM05D014916 ORTHO05D009575 8.4e-07 58.2 148 32.4
Hma1.2p1_0273F.1_g109240 Hydrangea macrophylla HOM05D008157 ORTHO05D009575 1.4e-06 57.4 130 34.6
MSTRG.4173 Avicennia marina HOM05D008157 ORTHO05D009575 2.4e-06 56.6 149 31.5
Hma1.2p1_1702F.1_g298280 Hydrangea macrophylla HOM05D008157 ORTHO05D009575 3.2e-06 56.2 130 34.6
Lsat_1_v5_gn_6_66080 Lactuca sativa HOM05D008157 ORTHO05D035152 7.1e-06 55.1 158 32.9
PSO832G3861 Papaver somniferum HOM05D008157 ORTHO05D009575 9.2e-06 54.7 146 34.9
TAR633G2472 Trochodendron aralioides HOM05D008157 ORTHO05D009575 9.2e-06 54.7 101 35.6


User provided reference genes

Program Settings