Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.011G133000 Phaseolus vulgaris HOM05D006335 ORTHO05D007617 1.2e-101 373.2 195 100.0
Phvul.011G131000 Phaseolus vulgaris HOM05D006335 ORTHO05D007617 1.5e-91 339.7 195 93.8
Phvul.011G133700 Phaseolus vulgaris HOM05D006335 ORTHO05D007617 6.3e-87 324.3 179 96.1
VMungo1127G1181 Vigna mungo HOM05D006335 ORTHO05D007617 6.8e-81 304.3 208 79.8
VMungo1127G1825 Vigna mungo HOM05D006335 ORTHO05D007617 2.6e-80 302.4 195 83.1
Glyma.15G020200 Glycine max HOM05D006335 ORTHO05D007617 8.0e-66 254.2 203 70.4
Glyma.06G277900 Glycine max HOM05D006335 ORTHO05D007617 1.3e-63 246.9 203 69.5
Ca_18884_v3 Cicer arietinum L. HOM05D006335 ORTHO05D007617 3.7e-55 218.8 197 60.4
Glyma.06G279000 Glycine max HOM05D006335 ORTHO05D007617 5.6e-51 204.9 138 77.5
Lj3g0002577 Lotus japonicus HOM05D006335 ORTHO05D007617 5.6e-51 204.9 211 59.2
Psat7g165600 Pisum sativum HOM05D006335 ORTHO05D007617 9.5e-51 204.1 205 54.6
Psat7g165440 Pisum sativum HOM05D006335 ORTHO05D007617 1.2e-50 203.8 205 54.6
TPR.G28309 Trifolium pratense HOM05D006335 ORTHO05D007617 4.7e-50 201.8 196 56.6
Medtr4g079460 Medicago truncatula HOM05D006335 ORTHO05D007617 1.4e-49 200.3 175 57.7
Medtr4g079810 Medicago truncatula HOM05D006335 ORTHO05D007617 4.4e-48 195.3 180 56.7
Lalb_Chr01g0005971 Lupinus albus HOM05D006335 ORTHO05D007617 8.1e-42 174.5 186 56.5
arahy.Tifrunner.gnm1.ann1.IJ2KIS Arachis hypogaea HOM05D006335 ORTHO05D007617 1.4e-38 163.7 224 47.3
arahy.Tifrunner.gnm1.ann1.Y7YMH3 Arachis hypogaea HOM05D006335 ORTHO05D007617 4.6e-37 158.7 222 46.8
Glyma.12G127400 Glycine max HOM05D006335 ORTHO05D007617 5.1e-36 155.2 137 65.7
arahy.Tifrunner.gnm1.ann1.E7WT9K Arachis hypogaea HOM05D006335 ORTHO05D007617 1.1e-35 154.1 225 44.9
arahy.Tifrunner.gnm1.ann1.DF2I7I Arachis hypogaea HOM05D006335 ORTHO05D007617 1.4e-25 120.6 224 39.3
FvH4_6g27231 Fragaria vesca HOM05D006335 ORTHO05D007617 4.5e-24 115.5 110 56.4
QL08p041551 Quercus lobata HOM05D006335 ORTHO05D007617 4.5e-24 115.5 176 41.5
MD09G1238400 Malus domestica HOM05D006335 ORTHO05D007617 7.6e-24 114.8 200 39.0
FAN05G4039 Fragaria x ananassa HOM05D006335 ORTHO05D007617 1.1e-22 110.9 122 49.2
FAN09G0462 Fragaria x ananassa HOM05D006335 ORTHO05D007617 5.4e-22 108.6 122 48.4
RcHm_v2.0_Chr2g0129291 Rosa chinensis HOM05D006335 ORTHO05D007617 5.4e-22 108.6 161 42.2
Duzib147G1311 Durio zibethinus HOM05D006335 ORTHO05D007617 9.3e-22 107.8 129 46.5
Glyma.06G279800 Glycine max HOM05D006335 ORTHO05D007617 1.2e-21 107.5 66 81.8
Hma1.2p1_0178F.1_g078870 Hydrangea macrophylla HOM05D006335 ORTHO05D007617 1.2e-21 107.5 114 48.2
FvH4_6g27220 Fragaria vesca HOM05D006335 ORTHO05D007617 2.1e-21 106.7 122 48.4
FAN14G0983 Fragaria x ananassa HOM05D006335 ORTHO05D007617 2.1e-21 106.7 122 48.4
CiPaw.04G132900 Carya illinoinensis HOM05D006335 ORTHO05D007617 3.5e-21 105.9 100 53.0
Manes.01G133300 Manihot esculenta HOM05D006335 ORTHO05D007617 4.6e-21 105.5 198 40.9
RcHm_v2.0_Chr2g0129361 Rosa chinensis HOM05D006335 ORTHO05D007617 6.0e-21 105.1 166 38.6
Prupe.3G117900 Prunus persica HOM05D006335 ORTHO05D007617 1.0e-20 104.4 127 46.5
Actinidia04365 Actinidia chinensis HOM05D006335 ORTHO05D007617 1.3e-20 104.0 172 39.0
Prupe.3G121400 Prunus persica HOM05D006335 ORTHO05D007617 1.1e-19 100.9 183 38.3
Thecc.01G149900 Theobroma cacao HOM05D006335 ORTHO05D007617 1.5e-19 100.5 110 46.4
A08p36030 Brassica napus HOM05D006335 ORTHO05D007617 1.9e-19 100.1 133 39.8
MD08G1181200 Malus domestica HOM05D006335 ORTHO05D007617 1.9e-19 100.1 107 52.3
TWI59G1087 Tripterygium wilfordii HOM05D006335 ORTHO05D007617 1.9e-19 100.1 121 43.0
Cc05_g08270 Coffea canephora HOM05D006335 ORTHO05D007617 3.3e-19 99.4 181 38.1
BraA08t35509Z Brassica rapa HOM05D006335 ORTHO05D007617 4.3e-19 99.0 136 40.4
COL.COLO4_33572 Corchorus olitorius HOM05D006335 ORTHO05D007617 7.4e-19 98.2 100 48.0
BolC8t47040H Brassica oleracea HOM05D006335 ORTHO05D007617 9.6e-19 97.8 136 39.7
VMungo1215G2452 Vigna mungo HOM05D006335 ORTHO05D007617 9.6e-19 97.8 85 64.7
BcaC07g36801 Brassica carinata HOM05D006335 ORTHO05D007617 1.3e-18 97.4 135 40.0
Thhalv10009758m.g Eutrema salsugineum HOM05D006335 ORTHO05D007617 1.6e-18 97.1 107 43.9
CANSAT64G2990 Cannabis sativa HOM05D006335 ORTHO05D007617 2.8e-18 96.3 115 42.6
AT1G06320 Arabidopsis thaliana HOM05D006335 ORTHO05D007617 6.2e-18 95.1 174 33.3
BcaC07g42074 Brassica carinata HOM05D006335 ORTHO05D007617 6.2e-18 95.1 115 40.9
C08p02480 Brassica napus HOM05D006335 ORTHO05D007617 8.1e-18 94.7 135 39.3
Lj1A685T55 Lonicera japonica HOM05D006335 ORTHO05D007617 1.1e-17 94.4 111 45.9
Eucgr.K01124 Eucalyptus grandis HOM05D006335 ORTHO05D007617 1.8e-17 93.6 177 36.2
Sp1g05110 Schrenkiella parvula HOM05D006335 ORTHO05D007617 1.8e-17 93.6 113 40.7
Sopen12g006210 Solanum pennellii HOM05D006335 ORTHO05D007617 6.9e-17 91.7 104 45.2
CARHR005880 Cardamine hirsuta HOM05D006335 ORTHO05D007617 9.0e-17 91.3 133 36.1
Gohir.A09G001600 Gossypium hirsutum HOM05D006335 ORTHO05D007617 9.0e-17 91.3 101 50.5
Solyc12g010850.1 Solanum lycopersicum HOM05D006335 ORTHO05D007617 9.0e-17 91.3 104 45.2
TAR626G0568 Trochodendron aralioides HOM05D006335 ORTHO05D007617 1.2e-16 90.9 116 45.7
C08p51300 Brassica napus HOM05D006335 ORTHO05D007617 1.5e-16 90.5 114 36.8
BolC8t52656H Brassica oleracea HOM05D006335 ORTHO05D007617 1.5e-16 90.5 114 36.8
Cpa.g.sc209.36 Carica papaya HOM05D006335 ORTHO05D007617 2.6e-16 89.7 135 37.0
Gorai.006G001500 Gossypium raimondii HOM05D006335 ORTHO05D007617 3.4e-16 89.4 99 50.5
AL1G16330 Arabidopsis lyrata HOM05D006335 ORTHO05D007617 4.5e-16 89.0 184 33.7
Sabra05G0153900 Salix brachista HOM05D006335 ORTHO05D007617 4.5e-16 89.0 101 45.5
Sed0026533 Sechium edule HOM05D006335 ORTHO05D007617 4.5e-16 89.0 120 44.2
Gohir.D09G001300 Gossypium hirsutum HOM05D006335 ORTHO05D007617 7.6e-16 88.2 99 49.5
RcHm_v2.0_Chr2g0129301 Rosa chinensis HOM05D006335 ORTHO05D007617 2.2e-15 86.7 160 35.6
A09p67040 Brassica napus HOM05D006335 ORTHO05D007617 2.9e-15 86.3 105 39.0
BraA09t42038Z Brassica rapa HOM05D006335 ORTHO05D007617 2.9e-15 86.3 105 39.0
Sc05g0006750 Simmondsia chinensis HOM05D006335 ORTHO05D007617 3.8e-15 85.9 130 43.8
Nn4g25571 Nelumbo nucifera HOM05D006335 ORTHO05D007617 4.9e-15 85.5 106 44.3
Potri.005G202500 Populus trichocarpa HOM05D006335 ORTHO05D007617 4.9e-15 85.5 99 46.5
SHI18965 Sapria himalayana HOM05D006335 ORTHO05D007617 6.4e-15 85.1 99 45.5
THA.LOC104816084 Tarenaya hassleriana HOM05D006335 ORTHO05D007617 6.4e-15 85.1 128 41.4
Carub.0001s0568 Capsella rubella HOM05D006335 ORTHO05D007617 8.4e-15 84.7 102 42.2
Nitab4.5_0008326g0020 Nicotiana tabacum HOM05D006335 ORTHO05D007617 1.4e-14 84.0 113 41.6
TAR624G0615 Trochodendron aralioides HOM05D006335 ORTHO05D007617 2.4e-14 83.2 166 35.5
PGR142G3040 Punica granatum HOM05D006335 ORTHO05D007617 3.2e-14 82.8 111 45.0
BcaB03g13422 Brassica carinata HOM05D006335 ORTHO05D007617 5.5e-14 82.0 108 38.9
Nitab4.5_0000537g0060 Nicotiana tabacum HOM05D006335 ORTHO05D007617 7.1e-14 81.6 105 41.0
TAR633G2592 Trochodendron aralioides HOM05D006335 ORTHO05D007617 7.1e-14 81.6 100 44.0
Aqoxy2G02728 Aquilegia oxysepala HOM05D006335 ORTHO05D007617 1.2e-13 80.9 98 43.9
FAN14G0259 Fragaria x ananassa HOM05D006335 ORTHO05D007617 1.2e-13 80.9 73 56.2
FAN05G3171 Fragaria x ananassa HOM05D006335 ORTHO05D007617 1.3e-12 77.4 107 45.8
Aa31LG1G7320 Aethionema arabicum HOM05D006335 ORTHO05D007617 3.0e-12 76.3 95 46.3
Hund07816 Selenicereus undatus HOM05D006335 ORTHO05D007617 3.9e-12 75.9 121 37.2
Aqoxy1G02076 Aquilegia oxysepala HOM05D006335 ORTHO05D007617 5.1e-12 75.5 118 36.4
Dinv15181 Davidia involucrata HOM05D006335 ORTHO05D007617 3.3e-11 72.8 104 41.3
Thecc.04G299900 Theobroma cacao HOM05D006335 ORTHO05D007617 7.4e-11 71.6 123 39.8
GSVIVG01034999001 Vitis vinifera HOM05D006335 ORTHO05D007617 1.3e-10 70.9 114 37.7
PGSC0003DMG400007858 Solanum tuberosum HOM05D006335 ORTHO05D007617 1.6e-10 70.5 104 38.5
AUR62038933 Chenopodium quinoa HOM05D006335 ORTHO05D007617 3.7e-10 69.3 114 37.7
HanXRQChr16g0530371 Helianthus annuus HOM05D006335 ORTHO05D007617 4.8e-10 68.9 76 44.7
Haze_13357 Corylus avellana HOM05D006335 ORTHO05D007617 8.2e-10 68.2 123 38.2
Dinv15448 Davidia involucrata HOM05D006335 ORTHO05D007617 8.2e-10 68.2 104 37.5
AUR62039006 Chenopodium quinoa HOM05D006335 ORTHO05D007617 1.4e-09 67.4 114 36.8
Lsat_1_v5_gn_8_120600 Lactuca sativa HOM05D006335 ORTHO05D007617 2.4e-09 66.6 98 40.8
ECA246G1597 Erigeron canadensis HOM05D006335 ORTHO05D007617 5.3e-09 65.5 97 37.1
Migut.D02221 Erythranthe guttata HOM05D006335 ORTHO05D007617 5.3e-09 65.5 106 37.7
FAN21G0105 Fragaria x ananassa HOM05D006335 ORTHO05D007617 2.0e-08 63.5 107 42.1
vmacro14418 Vaccinium macrocarpon HOM05D000550 ORTHO05D000400 2.6e-08 63.2 83 41.0
FAN16G3721 Fragaria x ananassa HOM05D022579 ORTHO05D007617 3.4e-08 62.8 49 59.2
Ciclev10016971m.g Citrus clementina HOM05D006335 ORTHO05D007617 1.3e-07 60.8 65 46.2
Aqoxy3G00772 Aquilegia oxysepala HOM05D006335 ORTHO05D007617 2.2e-07 60.1 92 34.8
ECA238G3583 Erigeron canadensis HOM05D006335 ORTHO05D007617 2.9e-07 59.7 68 44.1
PSO170G4547 Papaver somniferum HOM05D006335 ORTHO05D007617 2.9e-07 59.7 120 33.3
Zm00001eb014790 Zea mays HOM05D006335 ORTHO05D007617 2.9e-07 59.7 106 31.1
COL.COLO4_34622 Corchorus olitorius HOM05D006335 ORTHO05D007617 1.4e-06 57.4 73 45.2
Os03g0308600 Oryza sativa ssp. japonica HOM05D006335 ORTHO05D007617 5.5e-06 55.5 133 28.6
Os03g0308700 Oryza sativa ssp. japonica HOM05D006335 ORTHO05D007617 5.5e-06 55.5 137 30.7
Hund03123 Selenicereus undatus HOM05D006335 ORTHO05D007617 5.5e-06 55.5 158 31.0
BcaC07g42071 Brassica carinata HOM05D006335 ORTHO05D007617 7.1e-06 55.1 61 45.9
unitig_46.g18233 Utricularia gibba HOM05D006335 ORTHO05D007617 7.1e-06 55.1 108 37.0


User provided reference genes

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