Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.011G131000 Phaseolus vulgaris HOM05D006335 ORTHO05D007617 5.5e-99 364.4 194 100.0
Phvul.011G133000 Phaseolus vulgaris HOM05D006335 ORTHO05D007617 7.2e-91 337.4 195 93.8
Phvul.011G133700 Phaseolus vulgaris HOM05D006335 ORTHO05D007617 5.7e-88 327.8 179 98.3
VMungo1127G1181 Vigna mungo HOM05D006335 ORTHO05D007617 1.2e-77 293.5 208 78.4
VMungo1127G1825 Vigna mungo HOM05D006335 ORTHO05D007617 2.2e-76 289.3 195 82.6
Glyma.15G020200 Glycine max HOM05D006335 ORTHO05D007617 5.7e-64 248.1 203 70.0
Glyma.06G277900 Glycine max HOM05D006335 ORTHO05D007617 4.8e-63 245.0 203 70.0
Ca_18884_v3 Cicer arietinum L. HOM05D006335 ORTHO05D007617 1.9e-51 206.5 197 58.9
Glyma.06G279000 Glycine max HOM05D006335 ORTHO05D007617 2.3e-49 199.5 138 76.8
Psat7g165440 Pisum sativum HOM05D006335 ORTHO05D007617 1.2e-48 197.2 205 54.6
Psat7g165600 Pisum sativum HOM05D006335 ORTHO05D007617 1.2e-48 197.2 205 54.6
Medtr4g079460 Medicago truncatula HOM05D006335 ORTHO05D007617 2.6e-48 196.1 191 54.5
TPR.G28309 Trifolium pratense HOM05D006335 ORTHO05D007617 2.2e-47 193.0 196 55.1
Lj3g0002577 Lotus japonicus HOM05D006335 ORTHO05D007617 1.1e-46 190.7 211 57.8
Medtr4g079810 Medicago truncatula HOM05D006335 ORTHO05D007617 3.5e-45 185.7 196 52.6
Lalb_Chr01g0005971 Lupinus albus HOM05D006335 ORTHO05D007617 4.4e-40 168.7 186 54.8
arahy.Tifrunner.gnm1.ann1.IJ2KIS Arachis hypogaea HOM05D006335 ORTHO05D007617 1.1e-38 164.1 224 50.0
Glyma.12G127400 Glycine max HOM05D006335 ORTHO05D007617 7.8e-37 157.9 138 66.7
arahy.Tifrunner.gnm1.ann1.Y7YMH3 Arachis hypogaea HOM05D006335 ORTHO05D007617 1.0e-36 157.5 222 49.1
arahy.Tifrunner.gnm1.ann1.E7WT9K Arachis hypogaea HOM05D006335 ORTHO05D007617 1.1e-35 154.1 225 46.2
arahy.Tifrunner.gnm1.ann1.DF2I7I Arachis hypogaea HOM05D006335 ORTHO05D007617 5.6e-27 125.2 223 39.9
Glyma.06G279800 Glycine max HOM05D006335 ORTHO05D007617 3.8e-23 112.5 68 83.8
FvH4_6g27231 Fragaria vesca HOM05D006335 ORTHO05D007617 1.4e-22 110.5 110 56.4
FAN05G4039 Fragaria x ananassa HOM05D006335 ORTHO05D007617 5.4e-22 108.6 124 49.2
QL08p041551 Quercus lobata HOM05D006335 ORTHO05D007617 7.1e-22 108.2 111 51.4
FAN09G0462 Fragaria x ananassa HOM05D006335 ORTHO05D007617 2.7e-21 106.3 124 48.4
MD09G1238400 Malus domestica HOM05D006335 ORTHO05D007617 4.6e-21 105.5 202 39.1
FvH4_6g27220 Fragaria vesca HOM05D006335 ORTHO05D007617 1.0e-20 104.4 124 48.4
Duzib147G1311 Durio zibethinus HOM05D006335 ORTHO05D007617 3.0e-20 102.8 129 45.7
FAN14G0983 Fragaria x ananassa HOM05D006335 ORTHO05D007617 3.0e-20 102.8 122 48.4
RcHm_v2.0_Chr2g0129291 Rosa chinensis HOM05D006335 ORTHO05D007617 3.0e-20 102.8 161 41.6
Hma1.2p1_0178F.1_g078870 Hydrangea macrophylla HOM05D006335 ORTHO05D007617 1.5e-19 100.5 130 43.8
RcHm_v2.0_Chr2g0129361 Rosa chinensis HOM05D006335 ORTHO05D007617 2.5e-19 99.8 166 38.0
TWI59G1087 Tripterygium wilfordii HOM05D006335 ORTHO05D007617 2.5e-19 99.8 120 41.7
CiPaw.04G132900 Carya illinoinensis HOM05D006335 ORTHO05D007617 4.3e-19 99.0 100 52.0
Actinidia04365 Actinidia chinensis HOM05D006335 ORTHO05D007617 9.6e-19 97.8 175 38.3
Manes.01G133300 Manihot esculenta HOM05D006335 ORTHO05D007617 9.6e-19 97.8 198 38.4
Prupe.3G117900 Prunus persica HOM05D006335 ORTHO05D007617 2.8e-18 96.3 205 37.6
MD08G1181200 Malus domestica HOM05D006335 ORTHO05D007617 4.7e-18 95.5 108 50.0
Lj1A685T55 Lonicera japonica HOM05D006335 ORTHO05D007617 1.4e-17 94.0 110 43.6
Prupe.3G121400 Prunus persica HOM05D006335 ORTHO05D007617 1.8e-17 93.6 135 40.7
A08p36030 Brassica napus HOM05D006335 ORTHO05D007617 2.4e-17 93.2 133 39.1
CANSAT64G2990 Cannabis sativa HOM05D006335 ORTHO05D007617 3.1e-17 92.8 115 42.6
Gohir.A09G001600 Gossypium hirsutum HOM05D006335 ORTHO05D007617 3.1e-17 92.8 100 49.0
Sopen12g006210 Solanum pennellii HOM05D006335 ORTHO05D007617 4.0e-17 92.4 109 44.0
Thecc.01G149900 Theobroma cacao HOM05D006335 ORTHO05D007617 5.2e-17 92.0 121 41.3
BraA08t35509Z Brassica rapa HOM05D006335 ORTHO05D007617 6.9e-17 91.7 136 39.7
COL.COLO4_33572 Corchorus olitorius HOM05D006335 ORTHO05D007617 6.9e-17 91.7 100 47.0
Sed0026533 Sechium edule HOM05D006335 ORTHO05D007617 6.9e-17 91.7 166 38.6
Solyc12g010850.1 Solanum lycopersicum HOM05D006335 ORTHO05D007617 6.9e-17 91.7 110 41.8
Cc05_g08270 Coffea canephora HOM05D006335 ORTHO05D007617 8.9e-17 91.3 177 38.4
Gorai.006G001500 Gossypium raimondii HOM05D006335 ORTHO05D007617 1.2e-16 90.9 98 49.0
VMungo1215G2452 Vigna mungo HOM05D006335 ORTHO05D007617 1.2e-16 90.9 85 62.4
BcaC07g36801 Brassica carinata HOM05D006335 ORTHO05D007617 1.5e-16 90.5 135 39.3
BolC8t47040H Brassica oleracea HOM05D006335 ORTHO05D007617 1.5e-16 90.5 136 39.0
Thhalv10009758m.g Eutrema salsugineum HOM05D006335 ORTHO05D007617 1.5e-16 90.5 107 43.0
Eucgr.K01124 Eucalyptus grandis HOM05D006335 ORTHO05D007617 2.6e-16 89.7 177 36.7
Gohir.D09G001300 Gossypium hirsutum HOM05D006335 ORTHO05D007617 2.6e-16 89.7 98 48.0
Sp1g05110 Schrenkiella parvula HOM05D006335 ORTHO05D007617 5.8e-16 88.6 150 36.0
BcaC07g42074 Brassica carinata HOM05D006335 ORTHO05D007617 7.6e-16 88.2 115 40.0
C08p02480 Brassica napus HOM05D006335 ORTHO05D007617 9.9e-16 87.8 135 38.5
RcHm_v2.0_Chr2g0129301 Rosa chinensis HOM05D006335 ORTHO05D007617 9.9e-16 87.8 159 36.5
AT1G06320 Arabidopsis thaliana HOM05D006335 ORTHO05D007617 1.7e-15 87.0 174 33.9
Sabra05G0153900 Salix brachista HOM05D006335 ORTHO05D007617 2.9e-15 86.3 101 45.5
CARHR005880 Cardamine hirsuta HOM05D006335 ORTHO05D007617 3.8e-15 85.9 149 32.2
Potri.005G202500 Populus trichocarpa HOM05D006335 ORTHO05D007617 3.8e-15 85.9 98 46.9
Sc05g0006750 Simmondsia chinensis HOM05D006335 ORTHO05D007617 8.4e-15 84.7 129 42.6
Nitab4.5_0008326g0020 Nicotiana tabacum HOM05D006335 ORTHO05D007617 1.1e-14 84.3 112 40.2
TAR626G0568 Trochodendron aralioides HOM05D006335 ORTHO05D007617 1.4e-14 84.0 153 36.6
C08p51300 Brassica napus HOM05D006335 ORTHO05D007617 1.9e-14 83.6 114 36.0
BolC8t52656H Brassica oleracea HOM05D006335 ORTHO05D007617 1.9e-14 83.6 114 36.0
THA.LOC104816084 Tarenaya hassleriana HOM05D006335 ORTHO05D007617 2.4e-14 83.2 128 39.8
Cpa.g.sc209.36 Carica papaya HOM05D006335 ORTHO05D007617 3.2e-14 82.8 135 35.6
Nitab4.5_0000537g0060 Nicotiana tabacum HOM05D006335 ORTHO05D007617 4.2e-14 82.4 112 39.3
SHI18965 Sapria himalayana HOM05D006335 ORTHO05D007617 9.3e-14 81.3 99 45.5
FAN05G3171 Fragaria x ananassa HOM05D006335 ORTHO05D007617 2.1e-13 80.1 106 47.2
Nn4g25571 Nelumbo nucifera HOM05D006335 ORTHO05D007617 2.1e-13 80.1 106 44.3
A09p67040 Brassica napus HOM05D006335 ORTHO05D007617 3.5e-13 79.3 105 38.1
BraA09t42038Z Brassica rapa HOM05D006335 ORTHO05D007617 3.5e-13 79.3 105 38.1
Aqoxy2G02728 Aquilegia oxysepala HOM05D006335 ORTHO05D007617 6.0e-13 78.6 98 43.9
PGR142G3040 Punica granatum HOM05D006335 ORTHO05D007617 6.0e-13 78.6 113 41.6
AL1G16330 Arabidopsis lyrata HOM05D006335 ORTHO05D007617 1.0e-12 77.8 189 31.2
Carub.0001s0568 Capsella rubella HOM05D006335 ORTHO05D007617 1.0e-12 77.8 111 41.4
FAN14G0259 Fragaria x ananassa HOM05D006335 ORTHO05D007617 1.7e-12 77.0 73 56.2
BcaB03g13422 Brassica carinata HOM05D006335 ORTHO05D007617 5.1e-12 75.5 108 38.0
TAR633G2592 Trochodendron aralioides HOM05D006335 ORTHO05D007617 5.1e-12 75.5 154 35.7
TAR624G0615 Trochodendron aralioides HOM05D006335 ORTHO05D007617 8.7e-12 74.7 166 34.9
Aa31LG1G7320 Aethionema arabicum HOM05D006335 ORTHO05D007617 2.5e-11 73.2 104 44.2
Hund07816 Selenicereus undatus HOM05D006335 ORTHO05D007617 2.5e-11 73.2 135 37.0
Thecc.04G299900 Theobroma cacao HOM05D006335 ORTHO05D007617 2.8e-10 69.7 123 39.8
Aqoxy1G02076 Aquilegia oxysepala HOM05D006335 ORTHO05D007617 3.6e-10 69.3 118 35.6
PGSC0003DMG400007858 Solanum tuberosum HOM05D006335 ORTHO05D007617 3.6e-10 69.3 109 38.5
Dinv15181 Davidia involucrata HOM05D006335 ORTHO05D007617 6.2e-10 68.6 104 41.3
AUR62038933 Chenopodium quinoa HOM05D006335 ORTHO05D007617 1.4e-09 67.4 113 37.2
Dinv15448 Davidia involucrata HOM05D006335 ORTHO05D007617 1.8e-09 67.0 103 36.9
GSVIVG01034999001 Vitis vinifera HOM05D006335 ORTHO05D007617 1.8e-09 67.0 114 37.7
FAN21G0105 Fragaria x ananassa HOM05D006335 ORTHO05D007617 2.4e-09 66.6 106 41.5
AUR62039006 Chenopodium quinoa HOM05D006335 ORTHO05D007617 3.1e-09 66.2 113 36.3
HanXRQChr16g0530371 Helianthus annuus HOM05D006335 ORTHO05D007617 5.3e-09 65.5 75 41.3
FAN16G3721 Fragaria x ananassa HOM05D022579 ORTHO05D007617 6.9e-09 65.1 48 62.5
PSO170G4547 Papaver somniferum HOM05D006335 ORTHO05D007617 9.0e-09 64.7 119 34.5
ECA246G1597 Erigeron canadensis HOM05D006335 ORTHO05D007617 1.5e-08 63.9 96 35.4
Migut.D02221 Erythranthe guttata HOM05D006335 ORTHO05D007617 2.6e-08 63.2 120 33.3
Haze_13357 Corylus avellana HOM05D006335 ORTHO05D007617 4.5e-08 62.4 123 37.4
Lsat_1_v5_gn_8_120600 Lactuca sativa HOM05D006335 ORTHO05D007617 4.5e-08 62.4 112 36.6
Ciclev10016971m.g Citrus clementina HOM05D006335 ORTHO05D007617 9.9e-08 61.2 64 45.3
vmacro14418 Vaccinium macrocarpon HOM05D000550 ORTHO05D000400 1.7e-07 60.5 80 41.2
ECA238G3583 Erigeron canadensis HOM05D006335 ORTHO05D007617 3.8e-07 59.3 67 43.3
Zm00001eb014790 Zea mays HOM05D006335 ORTHO05D007617 1.9e-06 57.0 106 31.1
Os03g0308700 Oryza sativa ssp. japonica HOM05D006335 ORTHO05D007617 5.4e-06 55.5 137 31.4


User provided reference genes

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