Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.011G116900 Phaseolus vulgaris HOM05D005245 ORTHO05D006388 0.0e+00 1446.0 780 100.0
VMungo1127G0185 Vigna mungo HOM05D005245 ORTHO05D006388 0.0e+00 1177.9 794 82.1
Ca_18900_v3 Cicer arietinum L. HOM05D005245 ORTHO05D006388 9.5e-219 764.2 824 56.9
arahy.Tifrunner.gnm1.ann1.MS8YUN Arachis hypogaea HOM05D005245 ORTHO05D006388 2.1e-213 746.5 812 56.8
TPR.G14943 Trifolium pratense HOM05D005245 ORTHO05D006388 6.6e-212 741.5 795 56.7
arahy.Tifrunner.gnm1.ann1.BT5S0A Arachis hypogaea HOM05D005245 ORTHO05D006388 2.0e-208 729.9 782 56.8
Psat7g166560 Pisum sativum HOM05D005245 ORTHO05D006388 9.9e-208 727.6 787 55.3
Lj3g0023683 Lotus japonicus HOM05D005245 ORTHO05D006388 5.1e-204 715.3 831 55.0
Lalb_Chr19g0134981 Lupinus albus HOM05D005245 ORTHO05D006388 2.3e-196 689.9 797 55.5
Lalb_Chr03g0029811 Lupinus albus HOM05D005245 ORTHO05D006388 2.2e-191 673.3 794 52.1
Medtr4g079510 Medicago truncatula HOM05D005245 ORTHO05D006388 2.6e-184 649.8 797 53.8
Lalb_Chr01g0005921 Lupinus albus HOM05D005245 ORTHO05D006388 2.9e-183 646.4 821 52.3
Haze_13315 Corylus avellana HOM05D005245 ORTHO05D006388 1.3e-162 577.8 749 50.7
CiPaw.04G130500 Carya illinoinensis HOM05D005245 ORTHO05D006388 6.3e-154 548.9 893 43.2
Cfa014695 Carpinus fangiana HOM05D005245 ORTHO05D006388 9.1e-153 545.0 816 45.0
Thecc.01G241800 Theobroma cacao HOM05D005245 ORTHO05D006388 1.0e-151 541.6 786 46.4
QL08p043062 Quercus lobata HOM05D005245 ORTHO05D006388 8.0e-149 531.9 854 44.5
Prupe.8G044600 Prunus persica HOM05D005245 ORTHO05D006388 5.7e-147 525.8 823 47.6
Duzib264G0025 Durio zibethinus HOM05D005245 ORTHO05D006388 8.5e-143 511.9 682 48.7
Cpa.g.sc209.10 Carica papaya HOM05D005245 ORTHO05D006388 6.8e-140 502.3 785 45.4
MD17G1128800 Malus domestica HOM05D005245 ORTHO05D006388 8.8e-140 501.9 736 48.4
MD09G1139300 Malus domestica HOM05D005245 ORTHO05D006388 9.1e-137 491.9 830 44.9
Gohir.D10G112600 Gossypium hirsutum HOM05D005245 ORTHO05D006388 1.2e-136 491.5 804 44.8
Gorai.011G124400 Gossypium raimondii HOM05D005245 ORTHO05D006388 3.5e-136 490.0 804 44.7
Manes.13G138100 Manihot esculenta HOM05D005245 ORTHO05D006388 7.7e-136 488.8 770 44.7
Gohir.A10G153600 Gossypium hirsutum HOM05D005245 ORTHO05D006388 1.1e-134 485.0 811 43.9
CSS0021355 Camellia sinensis var. sinensis HOM05D005245 ORTHO05D006388 2.8e-130 470.3 668 48.2
GSVIVG01020660001 Vitis vinifera HOM05D005245 ORTHO05D006388 2.8e-130 470.3 765 41.4
TWI59G0121 Tripterygium wilfordii HOM05D005245 ORTHO05D006388 4.9e-130 469.5 685 44.8
Potri.019G091700 Populus trichocarpa HOM05D005245 ORTHO05D006388 3.1e-129 466.8 794 44.3
Hma1.2p1_0002F.1_g002540 Hydrangea macrophylla HOM05D005245 ORTHO05D006388 4.5e-128 463.0 672 44.6
Potri.013G119700 Populus trichocarpa HOM05D005245 ORTHO05D006388 3.9e-127 459.9 792 44.3
CANSAT64G0642 Cannabis sativa HOM05D005245 ORTHO05D006388 6.6e-127 459.1 880 39.9
Sabra19G0105000 Salix brachista HOM05D005245 ORTHO05D006388 6.6e-127 459.1 809 41.9
ClCG02G018020 Citrullus lanatus HOM05D005245 ORTHO05D006388 2.8e-125 453.8 812 41.9
Lalb_Chr22g0356801 Lupinus albus HOM05D005245 ORTHO05D006388 1.8e-124 451.1 706 42.2
TWI23G1119 Tripterygium wilfordii HOM05D005245 ORTHO05D006388 5.2e-124 449.5 683 44.5
Ciclev10014152m.g Citrus clementina HOM05D005245 ORTHO05D006388 5.8e-123 446.0 725 45.5
TAR316G0002 Trochodendron aralioides HOM05D005245 ORTHO05D006388 1.7e-122 444.5 700 41.0
THA.LOC104822691 Tarenaya hassleriana HOM05D005245 ORTHO05D006388 8.3e-122 442.2 663 41.5
RcHm_v2.0_Chr5g0053351 Rosa chinensis HOM05D005245 ORTHO05D006388 3.5e-120 436.8 779 42.0
Lj8C105T4 Lonicera japonica HOM05D005245 ORTHO05D006388 4.6e-120 436.4 676 44.5
Dinv03891 Davidia involucrata HOM05D005245 ORTHO05D006388 7.8e-120 435.6 599 47.9
Eucgr.A01888 Eucalyptus grandis HOM05D005245 ORTHO05D006388 2.3e-119 434.1 745 41.7
Nn1g09000 Nelumbo nucifera HOM05D005245 ORTHO05D006388 3.3e-118 430.3 669 41.6
CsaV3_6G015240 Cucumis sativus L. HOM05D005245 ORTHO05D006388 4.3e-118 429.9 796 41.2
Dinv19977 Davidia involucrata HOM05D005245 ORTHO05D006388 1.8e-116 424.5 811 40.8
TAR626G0262 Trochodendron aralioides HOM05D005245 ORTHO05D006388 1.2e-115 421.8 755 38.4
PGR042G2390 Punica granatum HOM05D005245 ORTHO05D006388 1.5e-115 421.4 830 37.5
Atru.chr6.2836 Acer truncatum HOM05D005245 ORTHO05D006388 5.8e-115 419.5 897 37.7
RcHm_v2.0_Chr2g0128861 Rosa chinensis HOM05D005245 ORTHO05D006388 7.5e-115 419.1 753 42.0
FAN09G0613 Fragaria x ananassa HOM05D005245 ORTHO05D006388 9.8e-115 418.7 777 40.2
Carub.0005s2496 Capsella rubella HOM05D005245 ORTHO05D006388 7.0e-113 412.5 669 40.7
Sed0004663 Sechium edule HOM05D005245 ORTHO05D006388 1.2e-112 411.8 822 39.8
Thhalv10005785m.g Eutrema salsugineum HOM05D005245 ORTHO05D006388 2.1e-112 411.0 748 39.6
AL5G39800 Arabidopsis lyrata HOM05D005245 ORTHO05D006388 1.0e-111 408.7 677 40.6
Nitab4.5_0002629g0110 Nicotiana tabacum HOM05D005245 ORTHO05D006388 1.7e-111 407.9 788 38.5
CARHR168460 Cardamine hirsuta HOM05D005245 ORTHO05D006388 6.6e-111 406.0 771 36.6
FvH4_6g27000 Fragaria vesca HOM05D005245 ORTHO05D006388 2.5e-110 404.1 792 39.4
AT3G58110 Arabidopsis thaliana HOM05D005245 ORTHO05D006388 4.7e-109 399.8 679 39.5
PGSC0003DMG400009404 Solanum tuberosum HOM05D005245 ORTHO05D006388 1.1e-108 398.7 770 38.3
Actinidia39337 Actinidia chinensis HOM05D005245 ORTHO05D006388 1.8e-108 397.9 869 37.5
Sopen07g027400 Solanum pennellii HOM05D005245 ORTHO05D006388 2.3e-108 397.5 808 37.0
FAN21G3056 Fragaria x ananassa HOM05D005245 ORTHO05D006388 6.8e-108 396.0 661 42.7
Sp5g04610 Schrenkiella parvula HOM05D005245 ORTHO05D006388 1.2e-107 395.2 782 37.6
FvH4_3g11260 Fragaria vesca HOM05D005245 ORTHO05D006388 2.0e-107 394.4 737 40.6
Nitab4.5_0006823g0030 Nicotiana tabacum HOM05D005245 ORTHO05D006388 1.1e-105 388.7 795 37.2
Sc12g0003330 Simmondsia chinensis HOM05D005245 ORTHO05D006388 2.4e-105 387.5 828 36.5
Peaxi162Scf00189g00017 Petunia axillaris HOM05D005245 ORTHO05D006388 4.1e-105 386.7 784 36.9
BolC6t37670H Brassica oleracea HOM05D005245 ORTHO05D006388 2.1e-104 384.4 794 38.3
C06p25110 Brassica napus HOM05D005245 ORTHO05D006388 1.7e-103 381.3 794 38.2
BraA07t30041Z Brassica rapa HOM05D005245 ORTHO05D006388 1.5e-102 378.3 674 40.4
BcaC08g44897 Brassica carinata HOM05D005245 ORTHO05D006388 3.3e-102 377.1 786 38.2
A07p23880 Brassica napus HOM05D005245 ORTHO05D006388 1.6e-101 374.8 809 38.2
CARHR137420 Cardamine hirsuta HOM05D005245 ORTHO05D006388 6.2e-101 372.9 665 39.5
BcaB02g07551 Brassica carinata HOM05D005245 ORTHO05D006388 6.8e-100 369.4 826 39.3
Actinidia30446 Actinidia chinensis HOM05D005245 ORTHO05D006388 3.4e-99 367.1 719 41.4
Solyc07g053440.4 Solanum lycopersicum HOM05D005245 ORTHO05D006388 3.8e-98 363.6 688 37.8
MBI06_g25721_MAGBIO Magnolia biondii HOM05D005245 ORTHO05D006388 4.9e-98 363.2 653 38.1
AL4G40790 Arabidopsis lyrata HOM05D005245 ORTHO05D006388 6.0e-96 356.3 689 39.2
Oeu031086.1 Olea europaea HOM05D005245 ORTHO05D006388 1.0e-95 355.5 666 37.7
AT2G42370 Arabidopsis thaliana HOM05D005245 ORTHO05D006388 5.1e-95 353.2 652 38.0
SGA_v2.0_scaffold106G30663 Striga asiatica HOM05D005245 ORTHO05D006388 1.5e-94 351.7 663 40.9
Glyma.06G284801 Glycine max HOM05D005245 ORTHO05D006388 2.5e-94 350.9 401 63.1
CAN.G1543.11 Capsicum annuum HOM05D005245 ORTHO05D006388 3.3e-94 350.5 864 32.8
Oeu000569.1 Olea europaea HOM05D005245 ORTHO05D006388 1.4e-92 345.1 660 38.3
Migut.M00189 Erythranthe guttata HOM05D005245 ORTHO05D006388 2.6e-91 340.9 676 40.4
TAR627G0756 Trochodendron aralioides HOM05D005245 ORTHO05D006388 3.8e-90 337.0 584 39.2
Rhsim04G0072600 Rhododendron simsii HOM05D005245 ORTHO05D006388 9.3e-89 332.4 951 34.1
Aqoxy1G02205 Aquilegia oxysepala HOM05D005245 ORTHO05D006388 3.9e-87 327.0 660 35.2
Oeu036088.3 Olea europaea HOM05D005245 ORTHO05D006388 1.5e-86 325.1 664 38.3
Lsat_1_v5_gn_8_137601 Lactuca sativa HOM05D005245 ORTHO05D006388 1.5e-83 315.1 806 36.8
unitig_899.g15324 Utricularia gibba HOM05D005245 ORTHO05D006388 2.0e-83 314.7 673 35.1
AUR62038992 Chenopodium quinoa HOM05D005245 ORTHO05D006388 2.6e-83 314.3 721 33.6
EL10Ac9g20856 Beta vulgaris HOM05D005245 ORTHO05D006388 4.5e-83 313.5 741 34.0
Sabra13G0101100 Salix brachista HOM05D005245 ORTHO05D006388 1.3e-82 312.0 635 41.1
SalBow7G1067 Salvia bowleyana HOM05D005245 ORTHO05D006388 8.4e-82 309.3 809 35.1
Hund00957 Selenicereus undatus HOM05D005245 ORTHO05D006388 9.3e-81 305.8 903 30.6
PSO384G4553 Papaver somniferum HOM05D005245 ORTHO05D006388 2.1e-80 304.7 771 33.6
AUR62024070 Chenopodium quinoa HOM05D005245 ORTHO05D006388 6.7e-79 299.7 738 31.7
HanXRQChr17g0554751 Helianthus annuus HOM05D005245 ORTHO05D006388 1.4e-76 292.0 810 32.8
ECA233G0823 Erigeron canadensis HOM05D005245 ORTHO05D006388 1.5e-75 288.5 684 34.4
PSO339G1987 Papaver somniferum HOM05D005245 ORTHO05D006388 2.6e-75 287.7 781 32.3
Ah.01g003870 Amaranthus hybridus HOM05D005245 ORTHO05D006388 1.4e-73 282.0 868 31.0
CDE10G0023 Ceratophyllum demersum HOM05D005245 ORTHO05D006388 3.5e-72 277.3 704 31.7
PSO782G4194 Papaver somniferum HOM05D005245 ORTHO05D006388 1.9e-70 271.6 803 29.5
SHI10497 Sapria himalayana HOM05D005245 ORTHO05D006388 2.8e-69 267.7 691 32.0
PSO063G4059 Papaver somniferum HOM05D005245 ORTHO05D006388 1.1e-68 265.8 818 29.2
COL.COLO4_10076 Corchorus olitorius HOM05D005245 ORTHO05D006388 5.0e-66 256.9 306 50.0
BcaB02g07550 Brassica carinata HOM05D005245 ORTHO05D006388 4.2e-65 253.8 677 35.9
HPP92_024035 Vanilla planifolia HOM05D005245 ORTHO05D006388 1.6e-64 251.9 674 34.0
MELO3C019743.2 Cucumis melo HOM05D005245 ORTHO05D006388 3.9e-63 247.3 431 42.0
DCAR_006629 Daucus carota HOM05D005245 ORTHO05D006388 8.7e-63 246.1 844 29.0
DCAR_025312 Daucus carota HOM05D005245 ORTHO05D006388 1.5e-62 245.4 953 28.4
HanXRQChr17g0560461 Helianthus annuus HOM05D005245 ORTHO05D006388 1.9e-62 245.0 655 33.6
COL.COLO4_23697 Corchorus olitorius HOM05D005245 ORTHO05D006388 3.3e-62 244.2 280 48.2
ATR0602G272 Amborella trichopoda HOM05D005245 ORTHO05D006388 3.1e-52 211.1 730 28.9
CDE10G0522 Ceratophyllum demersum HOM05D005245 ORTHO05D006388 5.3e-52 210.3 704 27.4
Glyma.12G121100 Glycine max HOM05D005245 ORTHO05D006388 3.2e-49 201.1 245 57.6
CsaV3_3G019350 Cucumis sativus L. HOM05D005245 ORTHO05D006388 7.2e-49 199.9 270 45.2
HPP92_005198 Vanilla planifolia HOM05D005245 ORTHO05D006388 3.9e-47 194.1 665 26.8
Atru.chr3.860 Acer truncatum HOM05D005245 ORTHO05D006388 2.7e-40 171.4 399 41.1
BcaC08g44896 Brassica carinata HOM05D005245 ORTHO05D006388 2.7e-40 171.4 178 51.1
Cc05_g08020 Coffea canephora HOM05D005245 ORTHO05D006388 1.5e-38 165.6 347 37.5
Cc02_g14370 Coffea canephora HOM05D005245 ORTHO05D006388 1.4e-31 142.5 213 39.0
Os06g0538200 Oryza sativa ssp. japonica HOM05D005245 ORTHO05D006388 5.0e-26 124.0 779 25.8
CDE10G0045 Ceratophyllum demersum HOM05D005245 ORTHO05D006388 3.2e-25 121.3 219 35.2
Sabra13G0101200 Salix brachista HOM05D005245 ORTHO05D006388 3.6e-24 117.9 154 47.4
SGA_v2.0_scaffold51G18646 Striga asiatica HOM05D005245 ORTHO05D006388 6.1e-24 117.1 488 30.9
Zm00001eb204940 Zea mays HOM05D005245 ORTHO05D006388 4.9e-21 107.5 312 31.4
SGA_v2.0_scaffold51G18645 Striga asiatica HOM05D005245 ORTHO05D006388 1.6e-19 102.4 240 34.6
Zm00001eb238770 Zea mays HOM05D005245 ORTHO05D006388 2.9e-18 98.2 453 28.3
ECA233G3350 Erigeron canadensis HOM05D005245 ORTHO05D006388 3.3e-17 94.7 199 32.2
SEGI_35055 Sequoiadendron giganteum HOM05D005245 ORTHO05D006388 9.5e-17 93.2 276 30.4
Zm00001eb238760 Zea mays HOM05D005245 ORTHO05D006388 1.2e-16 92.8 176 37.5
unitig_62.g23335 Utricularia gibba HOM05D005245 ORTHO05D006388 2.4e-12 78.6 132 35.6
RcHm_v2.0_Chr4g0423021 Rosa chinensis HOM05D005245 ORTHO05D006388 6.6e-10 70.5 73 53.4
CAN.G97.26 Capsicum annuum HOM05D000252 ORTHO05D006388 1.2e-08 66.2 64 48.4
Ah.09g225920 Amaranthus hybridus HOM05D005245 ORTHO05D006388 8.9e-07 60.1 89 38.2
Zm00001eb152820 Zea mays HOM05D056051 ORTHO05D049612 5.8e-06 57.4 170 30.0
Sabra10G0125200 Salix brachista HOM05D000508 ORTHO05D000371 9.8e-06 56.6 51 52.9


User provided reference genes

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