Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.011G115315 Phaseolus vulgaris HOM05D005116 ORTHO05D005937 1.1e-199 699.9 371 100.0
Glyma.12G116000 Glycine max HOM05D005116 ORTHO05D005937 2.3e-154 549.3 373 78.6
VMungo1127G1891 Vigna mungo HOM05D005116 ORTHO05D005937 2.9e-149 532.3 357 81.5
Lalb_Chr03g0029531 Lupinus albus HOM05D005116 ORTHO05D005937 5.0e-125 451.8 380 65.5
Lj3g0009567 Lotus japonicus HOM05D005116 ORTHO05D005937 4.8e-112 408.7 415 57.6
arahy.Tifrunner.gnm1.ann1.3GE2A8 Arachis hypogaea HOM05D005116 ORTHO05D005937 2.3e-106 389.8 375 61.6
arahy.Tifrunner.gnm1.ann1.KES1NF Arachis hypogaea HOM05D005116 ORTHO05D005937 6.8e-106 388.3 375 61.3
Ca_18939_v3 Cicer arietinum L. HOM05D005116 ORTHO05D005937 5.6e-100 368.6 374 58.8
Psat7g169080 Pisum sativum HOM05D005116 ORTHO05D005937 2.0e-97 360.1 374 56.7
GSVIVG01020569001 Vitis vinifera HOM05D005116 ORTHO05D005937 1.4e-90 337.4 393 52.9
MD09G1244900 Malus domestica HOM05D005116 ORTHO05D005937 9.8e-89 331.3 396 54.0
CiPaw.03G178700 Carya illinoinensis HOM05D005116 ORTHO05D005937 5.4e-87 325.5 423 49.6
TAR627G0112 Trochodendron aralioides HOM05D005116 ORTHO05D005937 2.3e-85 320.1 412 49.5
Thecc.06G001400 Theobroma cacao HOM05D005116 ORTHO05D005937 1.4e-82 310.8 404 49.0
RcHm_v2.0_Chr7g0225641 Rosa chinensis HOM05D005116 ORTHO05D005937 7.5e-81 305.1 374 51.1
FvH4_5g30750 Fragaria vesca HOM05D005116 ORTHO05D005937 9.8e-81 304.7 376 50.8
Duzib052G0489 Durio zibethinus HOM05D005116 ORTHO05D005937 2.2e-80 303.5 403 48.6
Ciclev10015278m.g Citrus clementina HOM05D005116 ORTHO05D005937 2.9e-80 303.1 412 46.8
TAR629G1139 Trochodendron aralioides HOM05D005116 ORTHO05D005937 2.9e-80 303.1 409 46.5
Eucgr.A01831 Eucalyptus grandis HOM05D005116 ORTHO05D005937 4.9e-80 302.4 387 49.4
RcHm_v2.0_Chr4g0410421 Rosa chinensis HOM05D005116 ORTHO05D005937 9.2e-79 298.1 377 49.6
Gorai.002G019600 Gossypium raimondii HOM05D005116 ORTHO05D005937 1.2e-78 297.7 394 48.0
FAN13G1308 Fragaria x ananassa HOM05D005116 ORTHO05D005937 1.6e-78 297.4 401 48.4
Duzib248G1083 Durio zibethinus HOM05D005116 ORTHO05D005937 2.7e-78 296.6 424 46.7
Medtr4g078505 Medicago truncatula HOM05D005116 ORTHO05D005937 6.0e-78 295.4 377 50.9
COL.COLO4_05946 Corchorus olitorius HOM05D005116 ORTHO05D005937 1.0e-77 294.7 405 46.9
Dinv13395 Davidia involucrata HOM05D005116 ORTHO05D005937 3.0e-77 293.1 410 47.1
ClCG02G017750 Citrullus lanatus HOM05D005116 ORTHO05D005937 1.5e-76 290.8 377 48.8
CsaV3_6G012810 Cucumis sativus L. HOM05D005116 ORTHO05D005937 4.3e-76 289.3 383 48.0
Potri.017G012500 Populus trichocarpa HOM05D005116 ORTHO05D005937 5.6e-76 288.9 400 49.0
Gohir.D01G017400 Gossypium hirsutum HOM05D005116 ORTHO05D005937 7.3e-76 288.5 407 45.7
Manes.13G144900 Manihot esculenta HOM05D005116 ORTHO05D005937 1.6e-75 287.3 440 45.2
CSS0036411 Camellia sinensis var. sinensis HOM05D005116 ORTHO05D005937 6.2e-75 285.4 409 47.2
TWI59G1245 Tripterygium wilfordii HOM05D005116 ORTHO05D005937 1.1e-74 284.6 421 44.4
PSO832G2322 Papaver somniferum HOM05D005116 ORTHO05D005937 1.4e-74 284.3 385 47.0
Gohir.A01G018800 Gossypium hirsutum HOM05D005116 ORTHO05D005937 4.0e-74 282.7 406 46.1
CANSAT64G0665 Cannabis sativa HOM05D005116 ORTHO05D005937 2.0e-73 280.4 381 47.5
CSS0044850 Camellia sinensis var. sinensis HOM05D005116 ORTHO05D005937 2.2e-72 276.9 424 45.5
Actinidia11017 Actinidia chinensis HOM05D005116 ORTHO05D005937 3.8e-72 276.2 395 45.6
MELO3C013631.2 Cucumis melo HOM05D005116 ORTHO05D005937 6.4e-72 275.4 377 47.5
Sc09g0004750 Simmondsia chinensis HOM05D005116 ORTHO05D005937 1.1e-71 274.6 374 47.3
Sed0010367 Sechium edule HOM05D005116 ORTHO05D005937 1.4e-71 274.2 382 46.6
PSO210G2339 Papaver somniferum HOM05D005116 ORTHO05D005937 2.4e-71 273.5 387 46.0
Sopen07g027830 Solanum pennellii HOM05D005116 ORTHO05D005937 2.7e-70 270.0 380 47.6
Aqoxy4G00731 Aquilegia oxysepala HOM05D005116 ORTHO05D005937 3.5e-70 269.6 371 49.9
Solyc07g053860.3 Solanum lycopersicum HOM05D005116 ORTHO05D005937 3.5e-70 269.6 386 48.4
PGR042G3305 Punica granatum HOM05D005116 ORTHO05D005937 6.0e-70 268.9 365 47.4
Cpa.g.sc83.62 Carica papaya HOM05D005116 ORTHO05D005937 1.7e-69 267.3 430 43.0
Ciclev10015471m.g Citrus clementina HOM05D005116 ORTHO05D005937 1.5e-68 264.2 234 61.5
Atru.chr6.2899 Acer truncatum HOM05D005116 ORTHO05D005937 9.6e-68 261.5 222 62.2
RhsimUnG0145200 Rhododendron simsii HOM05D005116 ORTHO05D005937 2.4e-66 256.9 431 42.5
Rhsim06G0139500 Rhododendron simsii HOM05D005116 ORTHO05D005937 1.2e-65 254.6 429 41.5
THA.LOC104801168 Tarenaya hassleriana HOM05D005116 ORTHO05D005937 3.4e-65 253.1 428 43.2
QL08p039613 Quercus lobata HOM05D005116 ORTHO05D005937 4.4e-65 252.7 583 34.5
Prupe.4G278300 Prunus persica HOM05D005116 ORTHO05D005937 7.6e-65 251.9 301 50.5
Sc09g0006700 Simmondsia chinensis HOM05D005116 ORTHO05D005937 1.3e-64 251.1 321 47.4
FAN18G1308 Fragaria x ananassa HOM05D005116 ORTHO05D005937 2.9e-64 250.0 292 51.7
DCAR_013025 Daucus carota HOM05D005116 ORTHO05D005937 3.8e-64 249.6 237 56.1
AUR62029845 Chenopodium quinoa HOM05D005116 ORTHO05D005937 6.4e-64 248.8 378 43.7
Migut.M00082 Erythranthe guttata HOM05D005116 ORTHO05D005937 7.1e-63 245.4 370 44.1
THA.LOC104826035 Tarenaya hassleriana HOM05D005116 ORTHO05D005937 2.7e-62 243.4 437 41.0
HPP92_007017 Vanilla planifolia HOM05D005116 ORTHO05D005937 6.0e-62 242.3 405 40.7
MBI07_g40350_MAGBIO Magnolia biondii HOM05D005116 ORTHO05D005937 7.8e-62 241.9 401 40.9
Aa31LG1G8970 Aethionema arabicum HOM05D005116 ORTHO05D005937 3.9e-61 239.6 419 41.1
Hund01029 Selenicereus undatus HOM05D005116 ORTHO05D005937 3.3e-60 236.5 252 53.2
Carub.0001s0286 Capsella rubella HOM05D005116 ORTHO05D005937 5.6e-60 235.7 405 41.5
HanXRQChr16g0525341 Helianthus annuus HOM05D005116 ORTHO05D005937 1.3e-59 234.6 384 41.7
ATR0763G277 Amborella trichopoda HOM05D005116 ORTHO05D005937 2.1e-59 233.8 359 42.6
EL10Ac5g11143 Beta vulgaris HOM05D005116 ORTHO05D005937 2.8e-59 233.4 372 42.7
SalBow7G1661 Salvia bowleyana HOM05D002934 ORTHO05D003937 4.8e-59 232.6 389 41.6
AT1G03760 Arabidopsis thaliana HOM05D005116 ORTHO05D005937 6.2e-59 232.3 407 39.3
HanXRQChr15g0470251 Helianthus annuus HOM05D005116 ORTHO05D005937 1.1e-58 231.5 389 41.9
CAN.G209.35 Capsicum annuum HOM05D005116 ORTHO05D005937 2.4e-58 230.3 391 42.2
Sp1g02620 Schrenkiella parvula HOM05D005116 ORTHO05D005937 4.0e-58 229.6 421 40.4
Thhalv10007808m.g Eutrema salsugineum HOM05D005116 ORTHO05D005937 5.3e-58 229.2 403 41.9
ECA234G2480 Erigeron canadensis HOM05D005116 ORTHO05D005937 1.5e-57 227.6 400 39.5
Cc00_g12320 Coffea canephora HOM05D005116 ORTHO05D005937 9.9e-57 224.9 247 53.8
Ah.09g227990 Amaranthus hybridus HOM05D005116 ORTHO05D005937 2.2e-56 223.8 196 57.1
unitig_748.g8536 Utricularia gibba HOM05D005116 ORTHO05D005937 4.2e-55 219.5 228 53.9
SEGI_12795 Sequoiadendron giganteum HOM05D005116 ORTHO05D005937 2.7e-54 216.9 416 36.8
SGA_v2.0_scaffold108G30901 Striga asiatica HOM05D005116 ORTHO05D005937 2.7e-54 216.9 207 56.5
Sabra17G0010300 Salix brachista HOM05D005116 ORTHO05D005937 4.6e-54 216.1 431 38.3
CARHR003090 Cardamine hirsuta HOM05D005116 ORTHO05D005937 7.9e-54 215.3 408 37.0
Haze_13200 Corylus avellana HOM05D005116 ORTHO05D005937 3.0e-53 213.4 499 33.3
vmacro15911 Vaccinium macrocarpon HOM05D005116 ORTHO05D005937 6.7e-53 212.2 169 64.5
Nitab4.5_0006721g0020 Nicotiana tabacum HOM05D005116 ORTHO05D005937 1.5e-52 211.1 377 42.4
Nitab4.5_0004959g0030 Nicotiana tabacum HOM05D005116 ORTHO05D005937 8.1e-51 205.3 375 42.1
SEGI_15947 Sequoiadendron giganteum HOM05D005116 ORTHO05D005937 1.5e-49 201.1 300 41.0
Oeu035627.2 Olea europaea HOM05D005116 ORTHO05D005937 2.6e-49 200.3 381 39.6
AL1G13310 Arabidopsis lyrata HOM05D005116 ORTHO05D005937 5.8e-49 199.1 425 36.9
Lj8A109T77 Lonicera japonica HOM05D005116 ORTHO05D005937 1.4e-47 194.5 319 42.6
TPR.G29254 Trifolium pratense HOM05D005116 ORTHO05D005937 2.4e-47 193.7 173 60.1
AUR62025873 Chenopodium quinoa HOM05D005116 ORTHO05D005937 4.2e-47 193.0 393 39.4
CDE02G0148 Ceratophyllum demersum HOM05D005116 ORTHO05D005937 5.1e-45 186.0 131 68.7
Actinidia11090 Actinidia chinensis HOM05D005116 ORTHO05D005937 1.9e-44 184.1 370 37.3
Lsat_1_v5_gn_4_29780 Lactuca sativa HOM05D005116 ORTHO05D005937 5.6e-44 182.6 302 42.7
Pp3c13_17680 Physcomitrium patens HOM05D005116 ORTHO05D005937 1.3e-43 181.4 200 49.5
BcaNung07372 Brassica carinata HOM05D005116 ORTHO05D005937 6.2e-43 179.1 380 37.9
BraA10t42497Z Brassica rapa HOM05D005116 ORTHO05D005937 3.1e-42 176.8 381 36.0
PSO478G3970 Papaver somniferum HOM05D005116 ORTHO05D005937 6.9e-42 175.6 263 45.2
C05p02100 Brassica napus HOM05D005116 ORTHO05D005937 1.2e-41 174.9 376 37.2
BcaC05g24513 Brassica carinata HOM05D005116 ORTHO05D005937 3.4e-41 173.3 376 37.0
BolC5t28987H Brassica oleracea HOM05D005116 ORTHO05D005937 4.5e-41 172.9 376 37.0
SMO115G0247 Selaginella moellendorffii HOM05D005116 ORTHO05D005937 3.8e-40 169.9 376 35.1
AUR62034810 Chenopodium quinoa HOM05D005116 ORTHO05D005937 2.7e-38 163.7 167 52.7
AagrBONN_evm.TU.Sc2ySwM_344.4439 Anthoceros agrestis HOM05D005116 ORTHO05D005937 1.8e-34 151.0 156 51.3
Mapoly0076s0049 Marchantia polymorpha HOM05D005116 ORTHO05D005937 3.1e-34 150.2 270 38.9
Zm00001eb142460 Zea mays HOM05D005116 ORTHO05D005937 1.3e-32 144.8 352 36.4
Aqoxy4G00799 Aquilegia oxysepala HOM05D005116 ORTHO05D005937 8.5e-32 142.1 228 45.2
Gorai.005G200500 Gossypium raimondii HOM05D005116 ORTHO05D005937 1.1e-31 141.7 215 44.7
Peaxi162Scf01415g00032 Petunia axillaris HOM05D005116 ORTHO05D005937 1.4e-31 141.4 377 34.7
CBR_g73964 Chara braunii HOM05D005116 ORTHO05D005937 7.9e-30 135.6 234 36.8
A10p02290 Brassica napus HOM05D005116 ORTHO05D005937 1.0e-29 135.2 302 36.1
BcaC02g07427 Brassica carinata HOM05D005116 ORTHO05D005937 1.3e-27 128.3 133 51.1
AagrBONN_evm.TU.Sc2ySwM_368.1082 Anthoceros agrestis HOM05D005116 ORTHO05D005937 4.8e-27 126.3 138 48.6
Glyma.12G137500 Glycine max HOM05D005116 ORTHO05D005937 1.2e-25 121.7 76 78.9
Gohir.D02G178750 Gossypium hirsutum HOM05D005116 ORTHO05D005937 5.0e-24 116.3 222 39.6
C04p67500 Brassica napus HOM05D005116 ORTHO05D005937 2.5e-23 114.0 345 31.9
BolC4t28247H Brassica oleracea HOM05D005116 ORTHO05D005937 9.4e-23 112.1 103 56.3
Os01g0928300 Oryza sativa ssp. japonica HOM05D005116 ORTHO05D005937 1.8e-21 107.8 95 57.9
Gohir.A03G155650 Gossypium hirsutum HOM05D005116 ORTHO05D005937 3.9e-21 106.7 166 44.6
Nitab4.5_0001752g0050 Nicotiana tabacum HOM05D005116 ORTHO05D005937 6.3e-19 99.4 82 62.2
TPR.G35937 Trifolium pratense HOM05D044939 ORTHO05D005937 1.7e-16 91.3 139 41.0
C08p00750 Brassica napus HOM05D005116 ORTHO05D031782 6.5e-16 89.4 327 27.2
BcaC07g36947 Brassica carinata HOM05D005116 ORTHO05D005937 1.0e-13 82.0 192 33.9
TPR.G36507 Trifolium pratense HOM05D044939 ORTHO05D005937 1.0e-13 82.0 136 40.4
BcaB06g29108 Brassica carinata HOM05D005116 ORTHO05D005937 6.7e-13 79.3 294 31.6
C03p22830 Brassica napus HOM05D000229 ORTHO05D005937 6.7e-13 79.3 100 45.0
MSTRG.25027 Avicennia marina HOM05D005116 ORTHO05D005937 8.8e-13 79.0 256 34.8
Cre13.g576350 Chlamydomonas reinhardtii HOM05D005116 ORTHO05D005937 2.0e-12 77.8 105 39.0
Lj8C109T10 Lonicera japonica HOM05D005116 ORTHO05D005937 2.0e-12 77.8 69 56.5
Nitab4.5_0000638g0150 Nicotiana tabacum HOM05D005116 ORTHO05D005937 5.7e-12 76.3 115 38.3
Oeu044722.1 Olea europaea HOM05D005116 ORTHO05D005937 9.7e-12 75.5 171 32.7
Psat4g011840 Pisum sativum HOM05D000294 ORTHO05D005937 4.8e-11 73.2 75 53.3
BcaC07g36946 Brassica carinata HOM05D005116 ORTHO05D031782 1.6e-09 68.2 329 26.1
Oeu023568.1 Olea europaea HOM05D005116 ORTHO05D005937 1.6e-09 68.2 43 67.4
Zm00001eb363750 Zea mays HOM05D005116 ORTHO05D005937 3.5e-09 67.0 284 29.9
Psat0s876g0200 Pisum sativum HOM05D005116 ORTHO05D005937 5.9e-09 66.2 73 52.1
arahy.Tifrunner.gnm1.ann1.13T34P Arachis hypogaea HOM05D000168 ORTHO05D000811 1.3e-08 65.1 56 57.1
BcaNung07287 Brassica carinata HOM05D005116 ORTHO05D005937 5.0e-08 63.2 61 54.1
arahy.Tifrunner.gnm1.ann1.FT3874 Arachis hypogaea HOM05D000168 ORTHO05D000811 1.9e-07 61.2 52 55.8
A08p37240 Brassica napus HOM05D005116 ORTHO05D005937 1.9e-07 61.2 242 31.4
BraA08t35622Z Brassica rapa HOM05D005116 ORTHO05D005937 5.5e-07 59.7 237 30.8
Glyma.19G101401 Glycine max HOM05D000147 ORTHO05D005937 5.5e-07 59.7 56 53.6
BcaC03g18340 Brassica carinata HOM05D005116 ORTHO05D005937 7.2e-07 59.3 80 42.5
C04p61610 Brassica napus HOM05D000171 ORTHO05D000101 9.4e-07 58.9 78 43.6
BolC2t12481H Brassica oleracea HOM05D005116 ORTHO05D005937 1.2e-06 58.5 78 42.3
BcaC01g05723 Brassica carinata HOM05D005116 ORTHO05D005937 2.1e-06 57.8 78 42.3
TPR.G20540 Trifolium pratense HOM05D005116 ORTHO05D005937 6.1e-06 56.2 46 71.7


User provided reference genes

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