Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.011G114100 Phaseolus vulgaris HOM05D001108 ORTHO05D005418 2.2e-149 532.3 275 100.0
VMungo1127G1775 Vigna mungo HOM05D001108 ORTHO05D005418 1.4e-137 493.0 275 90.9
Glyma.12G112900 Glycine max HOM05D001108 ORTHO05D005418 1.5e-113 413.3 275 80.4
Lj3g0011439 Lotus japonicus HOM05D001108 ORTHO05D005418 4.9e-101 371.7 273 73.6
QL08p038694 Quercus lobata HOM05D001108 ORTHO05D005418 6.3e-101 371.3 246 77.2
Haze_21052 Corylus avellana HOM05D001108 ORTHO05D001619 2.9e-98 362.5 245 75.1
CiPaw.04G125800 Carya illinoinensis HOM05D001108 ORTHO05D005418 1.5e-97 360.1 279 70.6
Lalb_Chr03g0029441 Lupinus albus HOM05D001108 ORTHO05D005418 9.5e-97 357.5 273 70.7
Medtr1g066930 Medicago truncatula HOM05D001108 ORTHO05D005418 2.8e-96 355.9 273 68.1
MD09G1247800 Malus domestica HOM05D001108 ORTHO05D005418 1.8e-95 353.2 276 69.6
Ca_20056_v3 Cicer arietinum L. HOM05D001108 ORTHO05D005418 4.0e-95 352.1 273 70.3
Medtr0004s0220 Medicago truncatula HOM05D001108 ORTHO05D005418 8.9e-95 350.9 241 75.9
arahy.Tifrunner.gnm1.ann1.S0UG05 Arachis hypogaea HOM05D001108 ORTHO05D005418 1.5e-94 350.1 279 69.5
Gohir.A09G128300 Gossypium hirsutum HOM05D001108 ORTHO05D005418 1.5e-94 350.1 280 65.0
Prupe.3G137500 Prunus persica HOM05D001108 ORTHO05D005418 2.0e-94 349.7 281 67.6
arahy.Tifrunner.gnm1.ann1.PPEG78 Arachis hypogaea HOM05D001108 ORTHO05D005418 2.6e-94 349.4 278 69.8
Ciclev10013903m.g Citrus clementina HOM05D001108 ORTHO05D005418 7.5e-94 347.8 249 73.1
COL.COLO4_33977 Corchorus olitorius HOM05D001108 ORTHO05D005418 3.7e-93 345.5 247 72.9
RcHm_v2.0_Chr7g0232111 Rosa chinensis HOM05D001108 ORTHO05D005418 6.4e-93 344.7 278 67.3
Atru.chr6.2997 Acer truncatum HOM05D001108 ORTHO05D005418 1.9e-92 343.2 276 68.8
Gohir.D09G124300 Gossypium hirsutum HOM05D001108 ORTHO05D005418 7.0e-92 341.3 280 63.6
Gorai.006G143100 Gossypium raimondii HOM05D001108 ORTHO05D005418 9.2e-92 340.9 280 63.6
arahy.Tifrunner.gnm1.ann1.SGC5R3 Arachis hypogaea HOM05D001108 ORTHO05D005418 1.2e-91 340.5 275 69.1
CANSAT80G2367 Cannabis sativa HOM05D001108 ORTHO05D005418 1.6e-91 340.1 220 77.3
Sc21g0002830 Simmondsia chinensis HOM05D001108 ORTHO05D005418 1.6e-91 340.1 247 69.6
arahy.Tifrunner.gnm1.ann1.85LIYI Arachis hypogaea HOM05D001108 ORTHO05D005418 3.5e-91 339.0 274 69.0
Thecc.05G172000 Theobroma cacao HOM05D001108 ORTHO05D005418 3.5e-91 339.0 245 70.6
MD17G1240700 Malus domestica HOM05D001108 ORTHO05D005418 6.0e-91 338.2 234 74.4
FvH4_5g33380 Fragaria vesca HOM05D001108 ORTHO05D005418 1.7e-90 336.7 239 74.1
FAN04G2154 Fragaria x ananassa HOM05D001108 ORTHO05D005418 2.3e-90 336.3 273 67.8
FAN18G0425 Fragaria x ananassa HOM05D001108 ORTHO05D005418 6.6e-90 334.7 241 73.9
TAR627G0387 Trochodendron aralioides HOM05D001108 ORTHO05D005418 6.6e-90 334.7 278 65.1
Duzib093G1006 Durio zibethinus HOM05D001108 ORTHO05D005418 3.3e-89 332.4 205 80.5
EL10Ac9g20764 Beta vulgaris HOM05D001108 ORTHO05D005418 4.3e-89 332.0 206 80.1
Nn1g04079 Nelumbo nucifera HOM05D001108 ORTHO05D005418 1.2e-88 330.5 209 78.0
Hund07929 Selenicereus undatus HOM05D001108 ORTHO05D005418 1.2e-88 330.5 241 70.1
Potri.019G100500 Populus trichocarpa HOM05D001108 ORTHO05D005418 1.6e-88 330.1 238 71.8
Cpa.g.sc34.160 Carica papaya HOM05D001108 ORTHO05D005418 2.8e-88 329.3 238 71.8
Sabra19G0110800 Salix brachista HOM05D001108 ORTHO05D005418 3.6e-88 328.9 211 79.6
Sabra19G0112200 Salix brachista HOM05D001108 ORTHO05D005418 3.6e-88 328.9 211 79.6
TWI75G0959 Tripterygium wilfordii HOM05D001108 ORTHO05D005418 6.2e-88 328.2 210 77.1
Sed0006413 Sechium edule HOM05D001108 ORTHO05D005418 1.1e-87 327.4 243 70.8
CsaV3_6G012940 Cucumis sativus L. HOM05D001108 ORTHO05D005418 5.2e-87 325.1 241 70.5
Manes.13G146800 Manihot esculenta HOM05D001108 ORTHO05D005418 6.8e-87 324.7 274 64.2
ClCG02G017630 Citrullus lanatus HOM05D001108 ORTHO05D005418 8.9e-87 324.3 241 69.7
vmacro12300 Vaccinium macrocarpon HOM05D001108 ORTHO05D005418 2.0e-86 323.2 246 68.3
Ah.01g015170 Amaranthus hybridus HOM05D001108 ORTHO05D005418 4.4e-86 322.0 206 77.7
Cfa017142 Carpinus fangiana HOM05D001108 ORTHO05D005418 9.8e-86 320.9 201 80.1
CARHR111330 Cardamine hirsuta HOM05D001108 ORTHO05D005418 4.9e-85 318.5 216 75.5
CsaV3_6G013000 Cucumis sativus L. HOM05D001108 ORTHO05D005418 4.9e-85 318.5 272 64.0
CSS0002926 Camellia sinensis var. sinensis HOM05D001108 ORTHO05D005418 1.1e-84 317.4 270 63.7
Eucgr.K01017 Eucalyptus grandis HOM05D001108 ORTHO05D005418 1.1e-84 317.4 237 70.0
Potri.013G131800 Populus trichocarpa HOM05D001108 ORTHO05D005418 1.1e-84 317.4 266 66.5
THA.LOC104824701 Tarenaya hassleriana HOM05D001108 ORTHO05D005418 1.4e-84 317.0 217 75.6
MSTRG.5628 Avicennia marina HOM05D001108 ORTHO05D005418 1.9e-84 316.6 243 66.7
Thhalv10002078m.g Eutrema salsugineum HOM05D001108 ORTHO05D005418 1.9e-84 316.6 240 70.8
CSS0042510 Camellia sinensis var. sinensis HOM05D001108 ORTHO05D005418 2.4e-84 316.2 270 63.7
Cpa.g.sc34.159 Carica papaya HOM05D001108 ORTHO05D005418 3.2e-84 315.8 236 66.1
Haze_13157 Corylus avellana HOM05D001108 ORTHO05D005418 3.2e-84 315.8 201 79.1
PSO782G4551 Papaver somniferum HOM05D001108 ORTHO05D005418 3.2e-84 315.8 207 76.3
EL10Ac4g08320 Beta vulgaris HOM05D001108 ORTHO05D005418 5.4e-84 315.1 241 65.1
PSO478G1555 Papaver somniferum HOM05D001108 ORTHO05D005418 5.4e-84 315.1 207 76.3
PSO541G4613 Papaver somniferum HOM05D001108 ORTHO05D005418 5.4e-84 315.1 207 75.4
CSS0039738 Camellia sinensis var. sinensis HOM05D001108 ORTHO05D005418 1.2e-83 313.9 210 75.7
SalBow1G0161 Salvia bowleyana HOM05D001108 ORTHO05D005418 1.6e-83 313.5 209 75.1
Migut.C01348 Erythranthe guttata HOM05D001108 ORTHO05D005418 2.1e-83 313.2 209 76.1
PGR142G4253 Punica granatum HOM05D001108 ORTHO05D005418 2.1e-83 313.2 241 69.3
PSO675G3815 Papaver somniferum HOM05D001108 ORTHO05D005418 2.7e-83 312.8 205 75.6
AL3G53780 Arabidopsis lyrata HOM05D001108 ORTHO05D005418 3.5e-83 312.4 221 72.4
AUR62019549 Chenopodium quinoa HOM05D001108 ORTHO05D005418 6.0e-83 311.6 239 66.5
AT2G20690 Arabidopsis thaliana HOM05D001108 ORTHO05D005418 1.0e-82 310.8 216 72.7
Carub.0003s3520 Capsella rubella HOM05D001108 ORTHO05D005418 1.0e-82 310.8 223 72.6
Nitab4.5_0000512g0050 Nicotiana tabacum HOM05D001108 ORTHO05D005418 1.3e-82 310.5 237 67.1
Rhsim06G0142500 Rhododendron simsii HOM05D001108 ORTHO05D005418 1.3e-82 310.5 276 62.3
CSS0044059 Camellia sinensis var. sinensis HOM05D001108 ORTHO05D005418 1.7e-82 310.1 263 64.3
Sabra13G0111300 Salix brachista HOM05D001108 ORTHO05D005418 2.3e-82 309.7 261 66.3
AUR62002952 Chenopodium quinoa HOM05D001108 ORTHO05D005418 3.9e-82 308.9 233 69.5
AUR62036092 Chenopodium quinoa HOM05D001108 ORTHO05D005418 8.6e-82 307.8 239 65.7
Nitab4.5_0004071g0020 Nicotiana tabacum HOM05D001108 ORTHO05D005418 8.6e-82 307.8 233 66.5
HanXRQChr06g0171321 Helianthus annuus HOM05D001108 ORTHO05D005418 1.1e-81 307.4 206 76.7
HPP92_003131 Vanilla planifolia HOM05D001108 ORTHO05D005418 1.1e-81 307.4 218 70.2
CAN.G248.33 Capsicum annuum HOM05D001108 ORTHO05D005418 1.5e-81 307.0 272 60.7
Cc05_g07130 Coffea canephora HOM05D001108 ORTHO05D005418 2.5e-81 306.2 201 74.1
unitig_60.g25406 Utricularia gibba HOM05D001108 ORTHO05D005418 2.5e-81 306.2 276 58.7
Solyc07g054190.4 Solanum lycopersicum HOM05D001108 ORTHO05D005418 3.3e-81 305.8 233 68.2
C07p00210 Brassica napus HOM05D001108 ORTHO05D005418 5.6e-81 305.1 198 78.3
Sopen07g028120 Solanum pennellii HOM05D001108 ORTHO05D005418 5.6e-81 305.1 242 65.7
SGA_v2.0_scaffold92G28314 Striga asiatica HOM05D001108 ORTHO05D005418 7.3e-81 304.7 272 60.7
Peaxi162Scf00132g00233 Petunia axillaris HOM05D001229 ORTHO05D005418 1.2e-80 303.9 197 76.1
BcaB03g16863 Brassica carinata HOM05D001108 ORTHO05D005418 2.8e-80 302.8 238 69.7
BcaC06g36761 Brassica carinata HOM05D001108 ORTHO05D005418 2.8e-80 302.8 198 77.8
BolC7t40471H Brassica oleracea HOM05D001108 ORTHO05D005418 2.8e-80 302.8 198 77.8
Lsat_1_v5_gn_3_37280 Lactuca sativa HOM05D001108 ORTHO05D005418 3.6e-80 302.4 224 71.0
CAN.G248.11 Capsicum annuum HOM05D001108 ORTHO05D005418 6.2e-80 301.6 209 70.8
Sp3g33940 Schrenkiella parvula HOM05D001108 ORTHO05D005418 6.2e-80 301.6 199 77.4
A07p00070 Brassica napus HOM05D001108 ORTHO05D005418 8.1e-80 301.2 245 69.0
MELO3C000760.2 Cucumis melo HOM05D001108 ORTHO05D005418 8.1e-80 301.2 224 70.1
HanXRQChr06g0171311 Helianthus annuus HOM05D001108 ORTHO05D005418 8.1e-80 301.2 276 61.2
BraA07t27798Z Brassica rapa HOM05D001108 ORTHO05D005418 5.2e-79 298.5 245 68.6
AUR62007757 Chenopodium quinoa HOM05D001108 ORTHO05D005418 2.2e-77 293.1 225 68.4
Lsat_1_v5_gn_4_70021 Lactuca sativa HOM05D001108 ORTHO05D005418 2.2e-77 293.1 206 71.8
SEGI_26411 Sequoiadendron giganteum HOM05D001108 ORTHO05D005418 2.2e-77 293.1 203 73.9
DCAR_013007 Daucus carota HOM05D001108 ORTHO05D005418 1.1e-76 290.8 202 71.8
Nn1g06569 Nelumbo nucifera HOM05D001108 ORTHO05D005418 1.1e-76 290.8 224 66.5
ECA246G0340 Erigeron canadensis HOM05D001108 ORTHO05D005418 1.2e-75 287.3 198 74.2
Aqoxy1G02436 Aquilegia oxysepala HOM05D001108 ORTHO05D005418 2.1e-75 286.6 183 78.7
PGSC0003DMG400018350 Solanum tuberosum HOM05D001108 ORTHO05D005418 2.7e-75 286.2 201 71.6
ATR1096G056 Amborella trichopoda HOM05D001108 ORTHO05D005418 6.0e-75 285.0 233 63.5
CDE02G0464 Ceratophyllum demersum HOM05D001108 ORTHO05D005418 3.9e-74 282.3 197 72.6
Duzib128G0360 Durio zibethinus HOM05D001108 ORTHO05D005418 5.1e-74 282.0 232 64.2
CBR_g36747 Chara braunii HOM05D001108 ORTHO05D005418 2.5e-73 279.6 220 65.9
Mapoly0026s0114 Marchantia polymorpha HOM05D001108 ORTHO05D005418 1.2e-72 277.3 217 65.0
Aqoxy1G02437 Aquilegia oxysepala HOM05D001108 ORTHO05D005418 2.1e-72 276.6 239 60.3
Lj1P722T15 Lonicera japonica HOM05D001108 ORTHO05D005418 8.1e-72 274.6 181 76.8
AagrBONN_evm.TU.Sc2ySwM_228.5414 Anthoceros agrestis HOM05D001108 ORTHO05D005418 1.4e-71 273.9 213 65.3
Pp3c2_19260 Physcomitrium patens HOM05D001108 ORTHO05D005418 1.4e-71 273.9 199 68.8
SMO137G0361 Selaginella moellendorffii HOM05D001108 ORTHO05D005418 4.0e-71 272.3 199 68.8
Dinv26419 Davidia involucrata HOM05D001108 ORTHO05D005418 8.4e-69 264.6 177 72.9
Dinv23643 Davidia involucrata HOM05D001108 ORTHO05D005418 1.1e-68 264.2 177 74.6
Ah.04g164360 Amaranthus hybridus HOM05D001108 ORTHO05D005418 1.2e-67 260.8 263 55.9
Psat4g001880 Pisum sativum HOM05D001108 ORTHO05D005418 1.1e-65 254.2 267 55.8
CDE09G0563 Ceratophyllum demersum HOM05D001108 ORTHO05D005418 1.5e-65 253.8 179 71.5
Zm00001eb410410 Zea mays HOM05D001108 ORTHO05D005418 3.1e-63 246.1 207 61.4
Actinidia11036 Actinidia chinensis HOM05D001108 ORTHO05D005418 4.0e-63 245.7 184 68.5
Sabra19G0110900 Salix brachista HOM05D001108 ORTHO05D005418 2.9e-61 239.6 214 62.6
Zm00001eb410210 Zea mays HOM05D001108 ORTHO05D005418 2.9e-61 239.6 269 51.3
Os12g0541000 Oryza sativa ssp. japonica HOM05D001108 ORTHO05D005418 1.1e-60 237.7 242 53.3
BcaC04g22783 Brassica carinata HOM05D001108 ORTHO05D005418 6.0e-59 231.9 186 67.2
CAN.G248.16 Capsicum annuum HOM05D001108 ORTHO05D005418 1.1e-55 221.1 165 66.7
CAN.G851.1 Capsicum annuum HOM05D001108 ORTHO05D005418 1.1e-55 221.1 165 66.7
MD09G1265300 Malus domestica HOM05D001108 ORTHO05D005418 1.1e-55 221.1 185 64.3
HanXRQChr06g0169711 Helianthus annuus HOM05D001108 ORTHO05D005418 1.6e-51 207.2 269 50.2
CANSAT80G2295 Cannabis sativa HOM05D001108 ORTHO05D005418 2.1e-51 206.8 135 75.6
C09p15330 Brassica napus HOM05D001108 ORTHO05D005418 1.8e-50 203.8 190 60.0
unitig_88.g27586 Utricularia gibba HOM05D001108 ORTHO05D005418 1.1e-44 184.5 116 76.7
Pp3s30_1010 Physcomitrium patens HOM05D000723 ORTHO05D004839 3.2e-44 183.0 198 49.5
Cfa026241 Carpinus fangiana HOM05D001108 ORTHO05D005418 1.8e-42 177.2 184 50.5
Lsat_1_v5_gn_4_42240 Lactuca sativa HOM05D001108 ORTHO05D005418 2.4e-39 166.8 110 74.5
HanXRQChr06g0169731 Helianthus annuus HOM05D001108 ORTHO05D005418 2.1e-35 153.7 90 81.1
FAN08G2132 Fragaria x ananassa HOM05D001108 ORTHO05D005418 3.0e-34 149.8 88 80.7
Psat5g098840 Pisum sativum HOM05D001108 ORTHO05D005418 2.5e-33 146.7 136 59.6
Cfa014613 Carpinus fangiana HOM05D001108 ORTHO05D005418 1.6e-32 144.1 196 45.4
MCO11G757 Micromonas commoda HOM05D001108 ORTHO05D005418 6.9e-31 138.7 201 43.3
CAN.G362.18 Capsicum annuum HOM05D001108 ORTHO05D005418 1.3e-29 134.4 222 41.0
PRCOL_00001102 Prasinoderma coloniale HOM05D001108 ORTHO05D005418 7.2e-28 128.6 206 39.3
Cre06.g296600 Chlamydomonas reinhardtii HOM05D001108 ORTHO05D005418 3.0e-26 123.2 211 35.5
Psat5g097760 Pisum sativum HOM05D002292 ORTHO05D005418 2.0e-25 120.6 132 53.0
Ca_28725_v3 Cicer arietinum L. HOM05D001108 ORTHO05D005418 2.0e-22 110.5 204 34.3
CAN.G248.14 Capsicum annuum HOM05D001108 ORTHO05D005418 4.5e-22 109.4 70 74.3
unitig_88.g27587 Utricularia gibba HOM05D001108 ORTHO05D005418 5.0e-21 105.9 140 43.6
Medtr4g063470 Medicago truncatula HOM05D001108 ORTHO05D005418 5.1e-18 95.9 66 72.7
AagrBONN_evm.TU.Sc2ySwM_228.459 Anthoceros agrestis HOM05D001108 ORTHO05D005418 4.4e-17 92.8 208 33.2
RcHm_v2.0_Chr2g0153941 Rosa chinensis HOM05D001108 ORTHO05D005418 7.7e-14 82.0 113 46.0
Lsat_1_v5_gn_8_150060 Lactuca sativa HOM05D001108 ORTHO05D005418 2.0e-09 67.4 65 53.8
MBI06_g06479_MAGBIO Magnolia biondii HOM05D001108 ORTHO05D005418 2.2e-08 63.9 70 55.7
Psat0s773g0040 Pisum sativum HOM05D001108 ORTHO05D005418 3.7e-08 63.2 149 34.2
BolC9t54441H Brassica oleracea HOM05D001108 ORTHO05D005418 6.3e-08 62.4 36 80.6
C09p34920 Brassica napus HOM05D001108 ORTHO05D005418 4.5e-06 56.2 55 56.4
BolC9t56339H Brassica oleracea HOM05D001108 ORTHO05D005418 4.5e-06 56.2 55 56.4


User provided reference genes

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