Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.011G110700 Phaseolus vulgaris HOM05D004655 ORTHO05D005567 2.8e-155 552.0 290 100.0
VMungo1127G2245 Vigna mungo HOM05D004655 ORTHO05D005567 5.1e-149 531.2 290 96.9
Glyma.06G299100 Glycine max HOM05D004655 ORTHO05D005567 7.6e-137 490.7 293 91.5
Glyma.12G106600 Glycine max HOM05D004655 ORTHO05D005567 1.4e-135 486.5 293 91.5
Lj3g0017119 Lotus japonicus HOM05D004655 ORTHO05D005567 2.3e-125 452.6 300 83.0
Psat7g149680 Pisum sativum HOM05D004655 ORTHO05D005567 8.7e-125 450.7 289 83.0
Medtr4g045980 Medicago truncatula HOM05D004655 ORTHO05D005567 4.3e-124 448.4 301 80.1
arahy.Tifrunner.gnm1.ann1.81TW8H Arachis hypogaea HOM05D004655 ORTHO05D005567 4.9e-120 434.9 301 80.7
arahy.Tifrunner.gnm1.ann1.S2JPPU Arachis hypogaea HOM05D004655 ORTHO05D005567 1.4e-119 433.3 301 80.7
Glyma.12G200200 Glycine max HOM05D004655 ORTHO05D005567 7.9e-118 427.6 288 78.5
Ca_20707_v3 Cicer arietinum L. HOM05D004655 ORTHO05D005567 1.0e-117 427.2 276 81.5
Glyma.13G302100 Glycine max HOM05D004655 ORTHO05D005567 8.7e-117 424.1 288 77.8
TPR.G21652 Trifolium pratense HOM05D004655 ORTHO05D005567 8.7e-117 424.1 260 84.6
Lalb_Chr01g0005451 Lupinus albus HOM05D004655 ORTHO05D005567 1.5e-116 423.3 300 78.0
QL08p036998 Quercus lobata HOM05D004655 ORTHO05D005567 2.8e-115 419.1 284 77.1
Lj3g0013026 Lotus japonicus HOM05D004655 ORTHO05D005567 4.8e-115 418.3 289 77.5
Lalb_Chr22g0356311 Lupinus albus HOM05D004655 ORTHO05D005567 4.0e-114 415.2 287 77.7
arahy.Tifrunner.gnm1.ann1.YR7HYJ Arachis hypogaea HOM05D004655 ORTHO05D005567 6.9e-114 414.5 292 77.7
Actinidia12466 Actinidia chinensis HOM05D004655 ORTHO05D005567 9.0e-114 414.1 291 78.0
CSS0017466 Camellia sinensis var. sinensis HOM05D004655 ORTHO05D005567 1.2e-113 413.7 289 78.5
VMungo1080G0396 Vigna mungo HOM05D004655 ORTHO05D005567 3.4e-113 412.1 289 76.1
Actinidia18535 Actinidia chinensis HOM05D004655 ORTHO05D005567 4.5e-113 411.8 288 77.4
arahy.Tifrunner.gnm1.ann1.XZ54ZU Arachis hypogaea HOM05D004655 ORTHO05D005567 1.0e-112 410.6 292 76.7
FAN02G3511 Fragaria x ananassa HOM05D004655 ORTHO05D005567 1.7e-112 409.8 282 77.3
FAN05G4368 Fragaria x ananassa HOM05D004655 ORTHO05D005567 1.7e-112 409.8 282 77.3
Ca_01544_v3 Cicer arietinum L. HOM05D004655 ORTHO05D005567 2.2e-112 409.5 295 76.6
FvH4_6g44420 Fragaria vesca HOM05D004655 ORTHO05D005567 3.8e-112 408.7 282 77.3
FAN02G1121 Fragaria x ananassa HOM05D004655 ORTHO05D005567 3.8e-112 408.7 282 76.6
RcHm_v2.0_Chr2g0161411 Rosa chinensis HOM05D004655 ORTHO05D005567 6.5e-112 407.9 284 78.2
FAN14G2207 Fragaria x ananassa HOM05D004655 ORTHO05D005567 8.4e-112 407.5 282 77.3
CSS0020863 Camellia sinensis var. sinensis HOM05D004655 ORTHO05D005567 1.1e-111 407.1 288 75.0
CSS0004933 Camellia sinensis var. sinensis HOM05D004655 ORTHO05D005567 2.5e-111 406.0 288 74.7
Manes.13G152400 Manihot esculenta HOM05D004655 ORTHO05D005567 3.2e-111 405.6 288 76.7
Phvul.005G108600 Phaseolus vulgaris HOM05D004655 ORTHO05D005567 9.3e-111 404.1 290 76.6
ClCG00G002920 Citrullus lanatus HOM05D004655 ORTHO05D005567 1.6e-110 403.3 289 75.4
ClCG02G001360 Citrullus lanatus HOM05D004655 ORTHO05D005567 1.6e-110 403.3 289 75.4
CsaV3_7G004070 Cucumis sativus L. HOM05D004655 ORTHO05D005567 2.1e-110 402.9 289 75.8
Duzib132G0437 Durio zibethinus HOM05D004655 ORTHO05D005567 6.0e-110 401.4 288 76.4
Duzib132G0466 Durio zibethinus HOM05D004655 ORTHO05D005567 6.0e-110 401.4 288 76.4
CiPaw.04G122300 Carya illinoinensis HOM05D004655 ORTHO05D005567 7.9e-110 401.0 281 75.8
Ciclev10016098m.g Citrus clementina HOM05D004655 ORTHO05D005567 7.9e-110 401.0 287 73.9
MELO3C018772.2 Cucumis melo HOM05D004655 ORTHO05D005567 1.0e-109 400.6 289 74.7
Dinv13829 Davidia involucrata HOM05D004655 ORTHO05D005567 1.3e-109 400.2 290 75.5
Cfa014528 Carpinus fangiana HOM05D004655 ORTHO05D005567 5.1e-109 398.3 290 76.2
Thecc.02G170400 Theobroma cacao HOM05D004655 ORTHO05D005567 1.1e-108 397.1 259 80.3
Psat5g269080 Pisum sativum HOM05D004655 ORTHO05D005567 5.7e-108 394.8 261 78.5
TPR.G18073 Trifolium pratense HOM05D004655 ORTHO05D005567 1.6e-107 393.3 302 71.9
Potri.019G117900 Populus trichocarpa HOM05D004655 ORTHO05D005567 3.7e-107 392.1 288 71.9
Prupe.3G228700 Prunus persica HOM05D004655 ORTHO05D005567 4.8e-107 391.7 289 73.0
TAR629G1482 Trochodendron aralioides HOM05D004655 ORTHO05D005567 1.1e-106 390.6 286 73.1
PGR042G1100 Punica granatum HOM05D004655 ORTHO05D005567 1.8e-106 389.8 290 73.1
TAR627G0814 Trochodendron aralioides HOM05D004655 ORTHO05D005567 2.4e-106 389.4 294 72.8
Medtr2g089795 Medicago truncatula HOM05D004655 ORTHO05D005567 3.1e-106 389.0 288 73.3
Potri.013G148400 Populus trichocarpa HOM05D004655 ORTHO05D005567 3.1e-106 389.0 288 73.3
Gohir.A04G106100 Gossypium hirsutum HOM05D004655 ORTHO05D005567 9.0e-106 387.5 288 74.7
COL.COLO4_13659 Corchorus olitorius HOM05D004655 ORTHO05D005567 1.5e-105 386.7 288 73.3
MD09G1097200 Malus domestica HOM05D004655 ORTHO05D005567 1.5e-105 386.7 289 72.3
Gorai.012G132100 Gossypium raimondii HOM05D004655 ORTHO05D005567 3.4e-105 385.6 288 74.3
Gohir.D04G146200 Gossypium hirsutum HOM05D004655 ORTHO05D005567 4.5e-105 385.2 288 74.3
MBI18_g27693_MAGBIO Magnolia biondii HOM05D004655 ORTHO05D005567 4.5e-105 385.2 281 72.2
EL10Ac9g20731 Beta vulgaris HOM05D004655 ORTHO05D005567 7.6e-105 384.4 290 72.8
MD17G1085500 Malus domestica HOM05D004655 ORTHO05D005567 1.0e-104 384.0 270 74.8
Sed0025834 Sechium edule HOM05D004655 ORTHO05D005567 1.0e-104 384.0 280 73.6
HanXRQChr06g0171121 Helianthus annuus HOM05D004655 ORTHO05D005567 1.7e-104 383.3 285 72.6
GSVIVG01029990001 Vitis vinifera HOM05D004655 ORTHO05D005567 2.2e-104 382.9 232 84.9
CANSAT64G1156 Cannabis sativa HOM05D004655 ORTHO05D005567 2.9e-104 382.5 289 71.3
Atru.chr6.3084 Acer truncatum HOM05D004655 ORTHO05D005567 6.5e-104 381.3 291 70.4
vmacro12257 Vaccinium macrocarpon HOM05D004655 ORTHO05D005567 1.1e-103 380.6 290 73.1
CiPaw.03G168300 Carya illinoinensis HOM05D004655 ORTHO05D005567 1.4e-103 380.2 283 71.7
Haze_13070 Corylus avellana HOM05D004655 ORTHO05D005567 1.9e-103 379.8 349 63.0
Hma1.2p1_0662F.1_g198360 Hydrangea macrophylla HOM05D004655 ORTHO05D005567 4.2e-103 378.6 288 73.3
TWI36G0222 Tripterygium wilfordii HOM05D004655 ORTHO05D005567 2.7e-102 375.9 288 72.9
Migut.H01014 Erythranthe guttata HOM05D004655 ORTHO05D005567 3.6e-102 375.6 289 70.9
MSTRG.14176 Avicennia marina HOM05D004655 ORTHO05D005567 6.1e-102 374.8 285 72.3
TWI75G0473 Tripterygium wilfordii HOM05D004655 ORTHO05D005567 6.1e-102 374.8 257 77.8
AUR62037119 Chenopodium quinoa HOM05D004655 ORTHO05D005567 7.9e-102 374.4 295 70.8
Lj1C737G5 Lonicera japonica HOM05D004655 ORTHO05D005567 1.8e-101 373.2 324 66.4
THA.LOC104804073 Tarenaya hassleriana HOM05D004655 ORTHO05D005567 2.3e-101 372.9 279 72.0
Nn1g03859 Nelumbo nucifera HOM05D004655 ORTHO05D005567 3.0e-101 372.5 284 71.1
Ah.01g005210 Amaranthus hybridus HOM05D004655 ORTHO05D005567 1.1e-100 370.5 291 72.2
Eucgr.A01774 Eucalyptus grandis HOM05D004655 ORTHO05D005567 1.1e-100 370.5 300 69.0
Nn1g06795 Nelumbo nucifera HOM05D004655 ORTHO05D005567 2.5e-100 369.4 274 73.0
Nn1g06798 Nelumbo nucifera HOM05D004655 ORTHO05D005567 2.5e-100 369.4 274 73.0
AUR62032763 Chenopodium quinoa HOM05D004655 ORTHO05D005567 3.3e-100 369.0 293 71.0
PGSC0003DMG400018330 Solanum tuberosum HOM05D004655 ORTHO05D005567 4.3e-100 368.6 285 69.1
Sopen07g028730 Solanum pennellii HOM05D004655 ORTHO05D005567 9.7e-100 367.5 285 68.4
Sp3g34160 Schrenkiella parvula HOM05D004655 ORTHO05D005567 1.6e-99 366.7 240 77.9
PSO675G0243 Papaver somniferum HOM05D004655 ORTHO05D005567 2.2e-99 366.3 286 67.8
ATR0693G119 Amborella trichopoda HOM05D004655 ORTHO05D005567 2.8e-99 365.9 285 69.5
Carub.0003s3556 Capsella rubella HOM05D004655 ORTHO05D005567 3.7e-99 365.5 285 69.8
Lsat_1_v5_gn_3_40720 Lactuca sativa HOM05D004655 ORTHO05D005567 3.7e-99 365.5 306 67.0
A09p58650 Brassica napus HOM05D004655 ORTHO05D005567 4.8e-99 365.2 240 77.5
BraA09t41251Z Brassica rapa HOM05D004655 ORTHO05D005567 4.8e-99 365.2 240 77.5
Os07g0558500 Oryza sativa ssp. japonica HOM05D004655 ORTHO05D005567 6.3e-99 364.8 234 78.2
Sabra19G0118300 Salix brachista HOM05D004655 ORTHO05D005567 1.1e-98 364.0 336 60.7
Zm00001eb324100 Zea mays HOM05D004655 ORTHO05D005567 1.1e-98 364.0 238 76.9
DCAR_012973 Daucus carota HOM05D004655 ORTHO05D005567 1.4e-98 363.6 287 69.0
C08p41940 Brassica napus HOM05D004655 ORTHO05D005567 1.8e-98 363.2 240 77.1
PSO541G1277 Papaver somniferum HOM05D004655 ORTHO05D005567 1.8e-98 363.2 288 67.4
Sabra19G0135300 Salix brachista HOM05D004655 ORTHO05D005567 1.8e-98 363.2 336 60.7
Sc12g0002690 Simmondsia chinensis HOM05D004655 ORTHO05D005567 2.4e-98 362.8 286 70.6
BcaC07g41186 Brassica carinata HOM05D004655 ORTHO05D005567 3.1e-98 362.5 240 76.7
BolC8t51757H Brassica oleracea HOM05D004655 ORTHO05D005567 3.1e-98 362.5 240 76.7
CARHR111640 Cardamine hirsuta HOM05D004655 ORTHO05D005567 4.1e-98 362.1 284 69.7
ECA246G4617 Erigeron canadensis HOM05D004655 ORTHO05D005567 5.3e-98 361.7 234 78.2
Hma1.2p1_0565F.1_g179650 Hydrangea macrophylla HOM05D004655 ORTHO05D005567 5.3e-98 361.7 290 71.7
Rhsim06G0153100 Rhododendron simsii HOM05D004655 ORTHO05D005567 5.3e-98 361.7 312 67.0
Thhalv10002049m.g Eutrema salsugineum HOM05D004655 ORTHO05D005567 1.2e-97 360.5 250 74.8
BcaB08g34948 Brassica carinata HOM05D004655 ORTHO05D005567 1.5e-97 360.1 241 76.8
Aa31LG8G17800 Aethionema arabicum HOM05D004655 ORTHO05D005567 4.5e-97 358.6 239 77.0
Cc05_g06070 Coffea canephora HOM05D004655 ORTHO05D005567 4.5e-97 358.6 278 72.3
AT2G20890 Arabidopsis thaliana HOM05D004655 ORTHO05D005567 1.0e-96 357.5 282 67.4
HPP92_012362 Vanilla planifolia HOM05D004655 ORTHO05D005567 2.9e-96 355.9 278 67.6
AL3G54160 Arabidopsis lyrata HOM05D004655 ORTHO05D005567 1.6e-94 350.1 289 66.4
unitig_21.g20001 Utricularia gibba HOM05D004655 ORTHO05D005567 1.6e-94 350.1 289 66.8
SalBow1G2826 Salvia bowleyana HOM05D004655 ORTHO05D005567 2.7e-94 349.4 225 77.8
DCAR_019200 Daucus carota HOM05D004655 ORTHO05D005567 3.6e-94 349.0 220 80.0
Aqoxy1G03905 Aquilegia oxysepala HOM05D004655 ORTHO05D005567 7.9e-94 347.8 285 64.9
SGA_v2.0_scaffold70G23458 Striga asiatica HOM05D004655 ORTHO05D005567 1.1e-92 344.0 268 69.8
Sabra13G0119700 Salix brachista HOM05D004655 ORTHO05D005567 7.4e-92 341.3 290 65.5
SGA_v2.0_scaffold34G13911 Striga asiatica HOM05D004655 ORTHO05D005567 2.8e-91 339.3 344 59.0
SalBow7G2858 Salvia bowleyana HOM05D004655 ORTHO05D005567 4.8e-91 338.6 248 70.6
Duzib052G1220 Durio zibethinus HOM05D004655 ORTHO05D005567 2.6e-89 332.8 288 64.2
CAN.G508.2 Capsicum annuum HOM05D004655 ORTHO05D005567 9.4e-87 324.3 217 76.5
Duzib248G0290 Durio zibethinus HOM05D004655 ORTHO05D005567 1.4e-85 320.5 190 85.8
FAN09G1462 Fragaria x ananassa HOM05D004655 ORTHO05D005567 1.5e-84 317.0 282 64.2
Peaxi162Scf00007g02516 Petunia axillaris HOM05D004655 ORTHO05D005567 2.2e-83 313.2 319 59.2
Lj8C118T0 Lonicera japonica HOM05D004655 ORTHO05D005567 6.3e-83 311.6 222 75.2
Nitab4.5_0000769g0070 Nicotiana tabacum HOM05D004655 ORTHO05D005567 2.6e-81 306.2 285 61.8
Pp3c19_17570 Physcomitrium patens HOM05D004655 ORTHO05D005567 7.7e-81 304.7 222 69.4
Mapoly0010s0156 Marchantia polymorpha HOM05D004655 ORTHO05D005567 1.9e-79 300.1 236 67.4
AagrBONN_evm.TU.Sc2ySwM_344.251 Anthoceros agrestis HOM05D004655 ORTHO05D005567 3.2e-79 299.3 215 68.8
Pp3c21_14540 Physcomitrium patens HOM05D004655 ORTHO05D005567 2.7e-78 296.2 224 67.4
Zm00001eb106830 Zea mays HOM05D004655 ORTHO05D005567 3.0e-77 292.7 184 79.3
Nitab4.5_0001019g0090 Nicotiana tabacum HOM05D004655 ORTHO05D005567 1.2e-76 290.8 212 71.7
SMO266G0053 Selaginella moellendorffii HOM05D004655 ORTHO05D005567 2.6e-76 289.7 201 70.1
Ah.01g014420 Amaranthus hybridus HOM05D004655 ORTHO05D005567 4.4e-76 288.9 231 70.1
Sc12g0003940 Simmondsia chinensis HOM05D004655 ORTHO05D005567 1.4e-74 283.9 231 67.1
AUR62037125 Chenopodium quinoa HOM05D001718 ORTHO05D008006 2.0e-73 280.0 230 67.4
AUR62032764 Chenopodium quinoa HOM05D001718 ORTHO05D008006 7.2e-71 271.6 262 60.3
Cpa.g.sc34.80 Carica papaya HOM05D004655 ORTHO05D005567 2.7e-65 253.1 197 68.5
Dinv15502 Davidia involucrata HOM05D004655 ORTHO05D005567 1.4e-61 240.7 187 70.6
CBR_g78876 Chara braunii HOM05D004655 ORTHO05D005567 3.8e-56 222.6 233 51.5
PRCOL_00003577 Prasinoderma coloniale HOM05D004655 ORTHO05D005567 3.3e-55 219.5 208 52.9
CDE05G0437 Ceratophyllum demersum HOM05D004655 ORTHO05D005567 4.1e-50 202.6 151 68.9
Cre13.g562850 Chlamydomonas reinhardtii HOM05D004655 ORTHO05D005567 1.6e-49 200.7 238 49.2
CDE05G0433 Ceratophyllum demersum HOM05D004655 ORTHO05D005567 1.0e-45 188.0 177 58.8
SEGI_32441 Sequoiadendron giganteum HOM05D004655 ORTHO05D005567 1.6e-38 164.1 164 54.9
MCO07G428 Micromonas commoda HOM05D004655 ORTHO05D005567 2.8e-38 163.3 216 42.6
Sed0002097 Sechium edule HOM05D004655 ORTHO05D005567 8.1e-22 108.6 288 35.4
VMungo0720G1089 Vigna mungo HOM05D004655 ORTHO05D005567 6.9e-21 105.5 59 89.8
Cpa.g.sc34.79 Carica papaya HOM05D004655 ORTHO05D005567 3.2e-18 96.7 62 80.6
ClCG02G001370 Citrullus lanatus HOM05D004655 ORTHO05D005567 6.0e-17 92.4 59 79.7
Oeu029438.1 Olea europaea HOM05D004655 ORTHO05D005567 3.4e-12 76.6 48 72.9
Sabra19G0118700 Salix brachista HOM05D004655 ORTHO05D005567 9.9e-12 75.1 44 81.8
Hma1.2p1_0479F.1_g161430 Hydrangea macrophylla HOM05D001315 ORTHO05D001618 1.4e-10 71.2 43 83.7
Oeu037167.1 Olea europaea HOM05D004655 ORTHO05D005567 8.1e-06 55.5 29 82.8


User provided reference genes

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