Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.011G110100 Phaseolus vulgaris HOM05D003920 ORTHO05D004877 1.8e-74 282.3 129 100.0
Phvul.005G019900 Phaseolus vulgaris HOM05D003920 ORTHO05D004877 1.7e-48 196.1 93 95.7
Glyma.15G272400 Glycine max HOM05D003920 ORTHO05D004877 5.0e-48 194.5 93 94.6
Glyma.08G153800 Glycine max HOM05D003920 ORTHO05D004877 1.9e-47 192.6 93 93.5
VMungo1080G0709 Vigna mungo HOM05D003920 ORTHO05D004877 1.2e-46 189.9 93 91.4
Lalb_Chr01g0015291 Lupinus albus HOM05D003920 ORTHO05D004877 1.6e-46 189.5 93 91.4
arahy.Tifrunner.gnm1.ann1.LBVL0K Arachis hypogaea HOM05D003920 ORTHO05D004877 2.1e-46 189.1 93 91.4
arahy.Tifrunner.gnm1.ann1.Z50281 Arachis hypogaea HOM05D003920 ORTHO05D004877 2.1e-46 189.1 93 91.4
Lj3g0003225 Lotus japonicus HOM05D003920 ORTHO05D004877 2.7e-46 188.7 93 89.2
Psat5g204200 Pisum sativum HOM05D003920 ORTHO05D004877 2.7e-46 188.7 93 89.2
TPR.G12140 Trifolium pratense HOM05D003920 ORTHO05D004877 8.0e-46 187.2 93 88.2
Ca_27172_v3 Cicer arietinum L. HOM05D003920 ORTHO05D004877 1.0e-45 186.8 93 89.2
Medtr3g028190 Medicago truncatula HOM05D003920 ORTHO05D004877 1.0e-45 186.8 93 88.2
Haze_03212 Corylus avellana HOM05D003920 ORTHO05D004877 7.5e-44 180.6 93 86.0
CSS0030964 Camellia sinensis var. sinensis HOM05D003920 ORTHO05D004877 1.7e-43 179.5 93 84.9
Potri.001G268200 Populus trichocarpa HOM05D003920 ORTHO05D004877 1.7e-43 179.5 93 84.9
Potri.009G062600 Populus trichocarpa HOM05D003920 ORTHO05D004877 1.7e-43 179.5 93 84.9
QL04p007133 Quercus lobata HOM05D003920 ORTHO05D004877 2.2e-43 179.1 93 84.9
Eucgr.J01264 Eucalyptus grandis HOM05D003920 ORTHO05D004877 2.8e-43 178.7 93 84.9
Sabra09G0046300 Salix brachista HOM05D003920 ORTHO05D004877 2.8e-43 178.7 93 84.9
Sabra16G0164300 Salix brachista HOM05D003920 ORTHO05D004877 3.7e-43 178.3 93 83.9
Gohir.A08G027700 Gossypium hirsutum HOM05D003920 ORTHO05D004877 4.8e-43 177.9 93 84.9
Gohir.D08G038400 Gossypium hirsutum HOM05D003920 ORTHO05D004877 4.8e-43 177.9 93 84.9
Gorai.004G036900 Gossypium raimondii HOM05D003920 ORTHO05D004877 4.8e-43 177.9 93 84.9
Prupe.2G011700 Prunus persica HOM05D003920 ORTHO05D004877 4.8e-43 177.9 93 82.8
Ciclev10031666m.g Citrus clementina HOM05D003920 ORTHO05D004877 8.2e-43 177.2 93 84.9
FAN06G2354 Fragaria x ananassa HOM05D003920 ORTHO05D004877 8.2e-43 177.2 93 82.8
MD07G1008500 Malus domestica HOM05D003920 ORTHO05D004877 8.2e-43 177.2 93 82.8
RcHm_v2.0_Chr1g0315781 Rosa chinensis HOM05D003920 ORTHO05D004877 8.2e-43 177.2 93 82.8
DCAR_003208 Daucus carota HOM05D003920 ORTHO05D004877 1.1e-42 176.8 93 82.8
ECA248G0446 Erigeron canadensis HOM05D003920 ORTHO05D004877 1.1e-42 176.8 93 83.9
FvH4_7g00890 Fragaria vesca HOM05D003920 ORTHO05D004877 1.4e-42 176.4 93 81.7
FAN01G3017 Fragaria x ananassa HOM05D003920 ORTHO05D004877 1.4e-42 176.4 93 81.7
FAN03G2194 Fragaria x ananassa HOM05D003920 ORTHO05D004877 1.4e-42 176.4 93 81.7
Lj9C630T11 Lonicera japonica HOM05D003920 ORTHO05D004877 1.4e-42 176.4 93 81.7
Lj7A569G59 Lonicera japonica HOM05D003920 ORTHO05D004877 1.8e-42 176.0 93 81.7
MD02G1313900 Malus domestica HOM05D003920 ORTHO05D004877 1.8e-42 176.0 93 81.7
Nitab4.5_0000254g0170 Nicotiana tabacum HOM05D003920 ORTHO05D004877 2.4e-42 175.6 99 78.8
HPP92_005768 Vanilla planifolia HOM05D003920 ORTHO05D004877 2.4e-42 175.6 93 82.8
Dinv43454 Davidia involucrata HOM05D003920 ORTHO05D004877 4.1e-42 174.9 93 83.9
PGR044G2195 Punica granatum HOM05D003920 ORTHO05D004877 4.1e-42 174.9 93 81.7
BcaB03g11569 Brassica carinata HOM05D003920 ORTHO05D004877 5.3e-42 174.5 93 81.7
COL.COLO4_23923 Corchorus olitorius HOM05D003920 ORTHO05D004877 7.0e-42 174.1 93 81.7
Lsat_1_v5_gn_1_107981 Lactuca sativa HOM05D003920 ORTHO05D004877 7.0e-42 174.1 93 80.6
Thecc.01G412100 Theobroma cacao HOM05D003920 ORTHO05D004877 7.0e-42 174.1 93 81.7
Cc02_g27790 Coffea canephora HOM05D003920 ORTHO05D004877 9.1e-42 173.7 93 81.7
HanXRQChr01g0016141 Helianthus annuus HOM05D003920 ORTHO05D004877 9.1e-42 173.7 93 80.6
Peaxi162Scf00428g00618 Petunia axillaris HOM05D003920 ORTHO05D004877 9.1e-42 173.7 93 80.6
Thhalv10021103m.g Eutrema salsugineum HOM05D003920 ORTHO05D004877 1.6e-41 172.9 93 80.6
Manes.10G144700 Manihot esculenta HOM05D003920 ORTHO05D004877 1.6e-41 172.9 93 81.7
Actinidia36714 Actinidia chinensis HOM05D003920 ORTHO05D004877 2.0e-41 172.6 91 80.2
Thhalv10023829m.g Eutrema salsugineum HOM05D003920 ORTHO05D004877 2.0e-41 172.6 94 77.7
Nn2g15431 Nelumbo nucifera HOM05D003920 ORTHO05D004877 2.0e-41 172.6 93 81.7
Aa31LG10G17420 Aethionema arabicum HOM05D003920 ORTHO05D004877 2.7e-41 172.2 93 79.6
MSTRG.5016 Avicennia marina HOM05D003920 ORTHO05D004877 2.7e-41 172.2 93 80.6
Sp3g06990 Schrenkiella parvula HOM05D003920 ORTHO05D004877 2.7e-41 172.2 93 80.6
DCAR_022405 Daucus carota HOM05D003920 ORTHO05D004877 3.5e-41 171.8 93 79.6
TWI73G0359 Tripterygium wilfordii HOM05D003920 ORTHO05D004877 3.5e-41 171.8 93 80.6
Aqoxy2G00138 Aquilegia oxysepala HOM05D003920 ORTHO05D004877 4.5e-41 171.4 93 79.6
CDE04G0006 Ceratophyllum demersum HOM05D003920 ORTHO05D004877 4.5e-41 171.4 93 79.6
AL3G19480 Arabidopsis lyrata HOM05D003920 ORTHO05D004877 5.9e-41 171.0 93 80.6
TWI53G1741 Tripterygium wilfordii HOM05D003920 ORTHO05D004877 5.9e-41 171.0 113 69.9
vmacro13655 Vaccinium macrocarpon HOM05D003920 ORTHO05D004877 5.9e-41 171.0 93 79.6
Actinidia31057 Actinidia chinensis HOM05D003920 ORTHO05D004877 7.7e-41 170.6 91 80.2
BraA01t04343Z Brassica rapa HOM05D003920 ORTHO05D004877 7.7e-41 170.6 93 79.6
ClCG09G004250 Citrullus lanatus HOM05D003920 ORTHO05D004877 7.7e-41 170.6 93 79.6
BcaC01g04265 Brassica carinata HOM05D003920 ORTHO05D004877 1.0e-40 170.2 93 79.6
BcaC09g47976 Brassica carinata HOM05D003920 ORTHO05D004877 1.0e-40 170.2 93 78.5
A03p35650 Brassica napus HOM05D003920 ORTHO05D004877 1.0e-40 170.2 93 79.6
C03p43290 Brassica napus HOM05D003920 ORTHO05D004877 1.0e-40 170.2 93 79.6
BolC3t16599H Brassica oleracea HOM05D003920 ORTHO05D004877 1.0e-40 170.2 93 79.6
BraA03t12740Z Brassica rapa HOM05D003920 ORTHO05D004877 1.0e-40 170.2 93 79.6
Carub.0005s3016 Capsella rubella HOM05D003920 ORTHO05D004877 1.0e-40 170.2 93 78.5
CARHR291420 Cardamine hirsuta HOM05D003920 ORTHO05D004877 1.0e-40 170.2 93 78.5
Peaxi162Scf00148g00610 Petunia axillaris HOM05D003920 ORTHO05D004877 1.0e-40 170.2 94 79.8
ATR0605G260 Amborella trichopoda HOM05D003920 ORTHO05D004877 1.3e-40 169.9 93 80.6
AL5G46410 Arabidopsis lyrata HOM05D003920 ORTHO05D004877 1.3e-40 169.9 93 78.5
MELO3C023541.2 Cucumis melo HOM05D003920 ORTHO05D004877 1.3e-40 169.9 93 78.5
AT3G08505 Arabidopsis thaliana HOM05D003920 ORTHO05D004877 1.7e-40 169.5 93 79.6
BcaC07g37767 Brassica carinata HOM05D003920 ORTHO05D004877 1.7e-40 169.5 93 78.5
A08p10660 Brassica napus HOM05D003920 ORTHO05D004877 1.7e-40 169.5 93 78.5
BolC8t48154H Brassica oleracea HOM05D003920 ORTHO05D004877 1.7e-40 169.5 93 78.5
BraA08t33064Z Brassica rapa HOM05D003920 ORTHO05D004877 1.7e-40 169.5 93 78.5
CsaV3_7G031170 Cucumis sativus L. HOM05D003920 ORTHO05D004877 1.7e-40 169.5 93 77.4
Thhalv10010518m.g Eutrema salsugineum HOM05D003920 ORTHO05D004877 1.7e-40 169.5 93 78.5
Nn7g36164 Nelumbo nucifera HOM05D003920 ORTHO05D004877 1.7e-40 169.5 93 80.6
Carub.0003s0765 Capsella rubella HOM05D003920 ORTHO05D004877 2.2e-40 169.1 93 79.6
Rhsim07G0054700 Rhododendron simsii HOM05D003920 ORTHO05D004877 2.2e-40 169.1 92 80.4
Sed0011667 Sechium edule HOM05D003920 ORTHO05D004877 2.2e-40 169.1 93 78.5
Sp1g00020 Schrenkiella parvula HOM05D003920 ORTHO05D004877 2.9e-40 168.7 93 77.4
Sp5g00030 Schrenkiella parvula HOM05D003920 ORTHO05D004877 2.9e-40 168.7 93 77.4
TAR369G0176 Trochodendron aralioides HOM05D003920 ORTHO05D004877 2.9e-40 168.7 93 79.6
Zm00001eb252860 Zea mays HOM05D003920 ORTHO05D004877 2.9e-40 168.7 94 76.6
CARHR082810 Cardamine hirsuta HOM05D003920 ORTHO05D004877 3.8e-40 168.3 93 78.5
BcaB04g21254 Brassica carinata HOM05D003920 ORTHO05D004877 5.0e-40 167.9 93 78.5
A08p28590 Brassica napus HOM05D003920 ORTHO05D004877 5.0e-40 167.9 93 76.3
Gohir.D08G166100 Gossypium hirsutum HOM05D003920 ORTHO05D004877 6.5e-40 167.5 93 78.5
Gorai.004G173300 Gossypium raimondii HOM05D003920 ORTHO05D004877 6.5e-40 167.5 93 78.5
Nitab4.5_0000634g0100 Nicotiana tabacum HOM05D003920 ORTHO05D004877 6.5e-40 167.5 93 75.3
Peaxi162Scf00407g00639 Petunia axillaris HOM05D003920 ORTHO05D004877 6.5e-40 167.5 93 75.3
PSO339G5616 Papaver somniferum HOM05D003920 ORTHO05D004877 1.1e-39 166.8 93 77.4
PSO384G3532 Papaver somniferum HOM05D003920 ORTHO05D004877 1.1e-39 166.8 93 77.4
Sc10g0000010 Simmondsia chinensis HOM05D003920 ORTHO05D004877 1.5e-39 166.4 93 78.5
BcaC07g39147 Brassica carinata HOM05D003920 ORTHO05D004877 1.9e-39 166.0 93 76.3
C08p21410 Brassica napus HOM05D003920 ORTHO05D004877 1.9e-39 166.0 93 76.3
BolC8t49780H Brassica oleracea HOM05D003920 ORTHO05D004877 1.9e-39 166.0 93 76.3
AUR62009376 Chenopodium quinoa HOM05D003920 ORTHO05D004877 1.9e-39 166.0 93 78.5
THA.LOC104827426 Tarenaya hassleriana HOM05D003920 ORTHO05D004877 1.9e-39 166.0 93 77.4
Atru.chr11.2647 Acer truncatum HOM05D003920 ORTHO05D004877 2.5e-39 165.6 93 77.4
Aa31LG5G18640 Aethionema arabicum HOM05D003920 ORTHO05D004877 2.5e-39 165.6 93 78.5
TAR633G1074 Trochodendron aralioides HOM05D003920 ORTHO05D004877 3.2e-39 165.2 92 78.3
Migut.N01471 Erythranthe guttata HOM05D003920 ORTHO05D004877 4.2e-39 164.9 93 77.4
Solyc10g038000.3 Solanum lycopersicum HOM05D003920 ORTHO05D004877 4.2e-39 164.9 93 78.5
Sopen10g011530 Solanum pennellii HOM05D003920 ORTHO05D004877 4.2e-39 164.9 93 78.5
unitig_85.g27216 Utricularia gibba HOM05D003920 ORTHO05D004877 4.2e-39 164.9 93 76.3
EL10Ac2g04315 Beta vulgaris HOM05D003920 ORTHO05D004877 5.5e-39 164.5 93 75.3
CAN.G709.1 Capsicum annuum HOM05D003920 ORTHO05D004877 1.2e-38 163.3 93 78.5
THA.LOC104819067 Tarenaya hassleriana HOM05D003920 ORTHO05D004877 1.2e-38 163.3 93 73.1
Zm00001eb381600 Zea mays HOM05D003920 ORTHO05D004877 2.1e-38 162.5 93 75.3
arahy.Tifrunner.gnm1.ann1.NHZH5I Arachis hypogaea HOM05D003920 ORTHO05D004877 3.6e-38 161.8 97 76.3
SGA_v2.0_scaffold167G38446 Striga asiatica HOM05D003920 ORTHO05D004877 3.6e-38 161.8 93 73.1
SEGI_34678 Sequoiadendron giganteum HOM05D003920 ORTHO05D004877 4.7e-38 161.4 93 75.3
Solyc01g087030.3 Solanum lycopersicum HOM05D003920 ORTHO05D004877 4.7e-38 161.4 93 74.2
arahy.Tifrunner.gnm1.ann1.3CZ6TN Arachis hypogaea HOM05D003920 ORTHO05D004877 6.1e-38 161.0 96 77.1
Sopen01g034110 Solanum pennellii HOM05D003920 ORTHO05D004877 6.1e-38 161.0 93 73.1
MSTRG.20593 Avicennia marina HOM05D003920 ORTHO05D004877 8.0e-38 160.6 93 72.0
MBI04_g13623_MAGBIO Magnolia biondii HOM05D003920 ORTHO05D004877 8.0e-38 160.6 93 79.6
PGR044G2672 Punica granatum HOM05D003920 ORTHO05D004877 1.4e-37 159.8 93 73.1
SalBow5G4770 Salvia bowleyana HOM05D003920 ORTHO05D004877 1.8e-37 159.5 93 71.0
Nitab4.5_0011837g0010 Nicotiana tabacum HOM05D003920 ORTHO05D004877 3.0e-37 158.7 109 65.1
Glyma.15G273000 Glycine max HOM05D003920 ORTHO05D004877 7.5e-36 154.1 98 70.4
Lj3g0002246 Lotus japonicus HOM05D003920 ORTHO05D004877 3.7e-35 151.8 96 68.8
VMungo1080G1751 Vigna mungo HOM05D003920 ORTHO05D004877 8.3e-35 150.6 98 68.4
Phvul.005G020000 Phaseolus vulgaris HOM05D003920 ORTHO05D004877 2.4e-34 149.1 99 68.7
Medtr3g028170 Medicago truncatula HOM05D003920 ORTHO05D004877 5.4e-34 147.9 96 68.8
SGA_v2.0_scaffold24G10678 Striga asiatica HOM05D003920 ORTHO05D004877 5.4e-34 147.9 93 64.5
TPR.G12281 Trifolium pratense HOM05D003920 ORTHO05D004877 5.4e-34 147.9 96 67.7
Glyma.08G154100 Glycine max HOM05D003920 ORTHO05D004877 9.1e-34 147.1 99 68.7
Potri.004G134400 Populus trichocarpa HOM05D003920 ORTHO05D004877 1.2e-33 146.7 93 68.8
Lalb_Chr01g0015331 Lupinus albus HOM05D003920 ORTHO05D004877 1.6e-33 146.4 96 66.7
Sabra04G0083700 Salix brachista HOM05D003920 ORTHO05D004877 1.0e-32 143.7 93 67.7
Lalb_Chr20g0108061 Lupinus albus HOM05D003920 ORTHO05D004877 1.7e-32 142.9 97 63.9
Ca_14370_v3 Cicer arietinum L. HOM05D003920 ORTHO05D004877 5.0e-32 141.4 98 65.3
Psat5g204240 Pisum sativum HOM05D003920 ORTHO05D004877 2.5e-31 139.0 97 64.9
Pp3c5_25680 Physcomitrium patens HOM05D003920 ORTHO05D004877 6.1e-30 134.4 93 55.9
Nitab4.5_0003190g0010 Nicotiana tabacum HOM05D003920 ORTHO05D004877 8.0e-30 134.0 70 82.9
Manes.07G005000 Manihot esculenta HOM05D003920 ORTHO05D004877 3.0e-29 132.1 70 82.9
Mapoly0042s0020 Marchantia polymorpha HOM05D003920 ORTHO05D004877 6.8e-29 131.0 93 54.8
SMO203G0245 Selaginella moellendorffii HOM05D003920 ORTHO05D004877 6.8e-29 131.0 93 59.1
GSVIVG01032073001 Vitis vinifera HOM05D003920 ORTHO05D004877 6.8e-29 131.0 68 83.8
Hund03665 Selenicereus undatus HOM05D003920 ORTHO05D004877 1.2e-28 130.2 70 81.4
unitig_26.g8826 Utricularia gibba HOM05D003920 ORTHO05D004877 2.0e-28 129.4 94 58.5
vmacro08182 Vaccinium macrocarpon HOM05D003920 ORTHO05D004877 2.6e-28 129.0 71 78.9
AagrBONN_evm.TU.Sc2ySwM_344.3645 Anthoceros agrestis HOM05D003920 ORTHO05D004877 7.5e-28 127.5 94 55.3
AUR62023057 Chenopodium quinoa HOM05D003920 ORTHO05D004877 3.7e-27 125.2 70 78.6
Oeu039134.1 Olea europaea HOM05D003920 ORTHO05D004877 3.7e-27 125.2 68 80.9
Cre06.g278136 Chlamydomonas reinhardtii HOM05D003920 ORTHO05D004877 1.3e-24 116.7 92 50.0
arahy.Tifrunner.gnm1.ann1.HIY6S0 Arachis hypogaea HOM05D003920 ORTHO05D004877 6.6e-24 114.4 93 57.0
Actinidia24671 Actinidia chinensis HOM05D003920 ORTHO05D004877 8.6e-24 114.0 58 84.5
Gohir.A08G145200 Gossypium hirsutum HOM05D003920 ORTHO05D004877 1.1e-23 113.6 79 69.6
arahy.Tifrunner.gnm1.ann1.YQ2HRW Arachis hypogaea HOM05D003920 ORTHO05D004877 1.9e-23 112.8 93 57.0
PRCOL_00005356 Prasinoderma coloniale HOM05D003920 ORTHO05D004877 3.2e-18 95.5 93 41.9
Nitab4.5_0004786g0010 Nicotiana tabacum HOM05D003920 ORTHO05D004877 3.9e-16 88.6 104 45.2
Nitab4.5_0001299g0010 Nicotiana tabacum HOM05D003920 ORTHO05D004877 8.6e-16 87.4 88 51.1
QL04p032014 Quercus lobata HOM05D003920 ORTHO05D004877 4.4e-12 75.1 47 68.1
QL04p032319 Quercus lobata HOM05D003920 ORTHO05D004877 1.3e-11 73.6 48 66.7
TPR.G31394 Trifolium pratense HOM05D002628 ORTHO05D002785 1.9e-10 69.7 93 37.6


User provided reference genes

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