Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.011G101800 Phaseolus vulgaris HOM05D004677 ORTHO05D005746 2.9e-154 548.5 272 100.0
VMungo1127G1216 Vigna mungo HOM05D004677 ORTHO05D005746 2.2e-146 522.3 272 95.2
Glyma.06G307800 Glycine max HOM05D004677 ORTHO05D005746 5.6e-142 507.7 272 93.0
Medtr4g049830 Medicago truncatula HOM05D004677 ORTHO05D005746 2.6e-131 472.2 268 85.8
TPR.G4610 Trifolium pratense HOM05D004677 ORTHO05D005746 2.6e-131 472.2 268 86.9
Ca_19496_v3 Cicer arietinum L. HOM05D004677 ORTHO05D005746 8.4e-130 467.2 278 84.9
Psat7g201040 Pisum sativum HOM05D004677 ORTHO05D005746 6.0e-128 461.1 276 83.7
arahy.Tifrunner.gnm1.ann1.34K6GT Arachis hypogaea HOM05D004677 ORTHO05D005746 3.4e-123 445.3 266 82.7
Duzib133G0523 Durio zibethinus HOM05D004677 ORTHO05D005746 8.4e-122 440.7 271 83.0
arahy.Tifrunner.gnm1.ann1.5LK61T Arachis hypogaea HOM05D004677 ORTHO05D005746 1.9e-121 439.5 266 81.6
FAN02G0422 Fragaria x ananassa HOM05D004677 ORTHO05D005746 3.2e-121 438.7 257 83.3
FAN05G4912 Fragaria x ananassa HOM05D004677 ORTHO05D005746 3.2e-121 438.7 257 83.3
FvH4_6g42850 Fragaria vesca HOM05D004677 ORTHO05D005746 1.2e-120 436.8 257 82.9
CANSAT64G2258 Cannabis sativa HOM05D004677 ORTHO05D005746 2.7e-120 435.6 261 83.5
COL.COLO4_20015 Corchorus olitorius HOM05D004677 ORTHO05D005746 2.7e-120 435.6 267 82.4
FAN14G2731 Fragaria x ananassa HOM05D004677 ORTHO05D005746 7.9e-120 434.1 257 82.1
QL08p032142 Quercus lobata HOM05D004677 ORTHO05D005746 1.0e-119 433.7 266 82.0
Lalb_Chr01g0005771 Lupinus albus HOM05D004677 ORTHO05D005746 6.7e-119 431.0 263 82.1
Manes.13G068200 Manihot esculenta HOM05D004677 ORTHO05D005746 1.1e-118 430.3 272 80.9
Cfa014357 Carpinus fangiana HOM05D004677 ORTHO05D005746 1.5e-118 429.9 250 85.2
Gohir.D07G176800 Gossypium hirsutum HOM05D004677 ORTHO05D005746 1.9e-118 429.5 270 80.4
Gorai.001G197600 Gossypium raimondii HOM05D004677 ORTHO05D005746 1.9e-118 429.5 270 80.4
Thecc.01G176700 Theobroma cacao HOM05D004677 ORTHO05D005746 1.9e-118 429.5 267 81.3
PGR142G1137 Punica granatum HOM05D004677 ORTHO05D005746 7.4e-118 427.6 256 84.4
RcHm_v2.0_Chr2g0158791 Rosa chinensis HOM05D004677 ORTHO05D005746 7.4e-118 427.6 254 83.5
CiPaw.03G158200 Carya illinoinensis HOM05D004677 ORTHO05D005746 9.6e-118 427.2 256 83.2
Prupe.3G214600 Prunus persica HOM05D004677 ORTHO05D005746 9.6e-118 427.2 271 79.7
Potri.014G155200 Populus trichocarpa HOM05D004677 ORTHO05D005746 1.6e-117 426.4 269 79.2
Atru.chr6.3221 Acer truncatum HOM05D004677 ORTHO05D005746 1.4e-116 423.3 261 81.2
TWI18G0105 Tripterygium wilfordii HOM05D004677 ORTHO05D005746 1.8e-116 422.9 265 80.8
Glyma.12G192200 Glycine max HOM05D004677 ORTHO05D005746 5.3e-116 421.4 240 85.8
AT2G32520 Arabidopsis thaliana HOM05D004677 ORTHO05D005746 3.4e-115 418.7 260 80.4
BolC4t27678H Brassica oleracea HOM05D004677 ORTHO05D005746 3.4e-115 418.7 255 82.7
BraA04t18010Z Brassica rapa HOM05D004677 ORTHO05D005746 3.4e-115 418.7 255 82.7
BcaC02g07915 Brassica carinata HOM05D004677 ORTHO05D005746 1.0e-114 417.2 265 80.0
C04p62010 Brassica napus HOM05D004677 ORTHO05D005746 1.0e-114 417.2 265 80.0
Carub.0004s1386 Capsella rubella HOM05D004677 ORTHO05D005746 1.0e-114 417.2 255 81.2
Aa31LG5G4780 Aethionema arabicum HOM05D004677 ORTHO05D005746 1.3e-114 416.8 254 81.1
Thhalv10017055m.g Eutrema salsugineum HOM05D004677 ORTHO05D005746 1.7e-114 416.4 255 81.2
VMungo1080G1602 Vigna mungo HOM05D004677 ORTHO05D005746 2.9e-114 415.6 241 84.2
Actinidia09726 Actinidia chinensis HOM05D004677 ORTHO05D005746 3.8e-114 415.2 265 78.9
AL4G27910 Arabidopsis lyrata HOM05D004677 ORTHO05D005746 5.0e-114 414.8 255 80.8
Ciclev10016206m.g Citrus clementina HOM05D004677 ORTHO05D005746 5.0e-114 414.8 259 80.3
THA.LOC104800998 Tarenaya hassleriana HOM05D004677 ORTHO05D005746 8.4e-114 414.1 252 82.1
Dinv08753 Davidia involucrata HOM05D004677 ORTHO05D005746 1.4e-113 413.3 257 79.8
Lj3g0003247 Lotus japonicus HOM05D004677 ORTHO05D005746 1.4e-113 413.3 235 85.5
Lalb_Chr01g0023241 Lupinus albus HOM05D004677 ORTHO05D005746 1.4e-113 413.3 242 83.5
Phvul.005G116100 Phaseolus vulgaris HOM05D004677 ORTHO05D005746 2.5e-113 412.5 240 84.2
FAN09G3259 Fragaria x ananassa HOM05D004677 ORTHO05D005746 7.2e-113 411.0 257 79.0
TWI36G1343 Tripterygium wilfordii HOM05D004677 ORTHO05D005746 7.2e-113 411.0 245 82.9
CsaV3_7G003450 Cucumis sativus L. HOM05D004677 ORTHO05D005746 1.6e-112 409.8 267 76.0
Hma1.2p1_0895F.1_g233790 Hydrangea macrophylla HOM05D004677 ORTHO05D005746 1.6e-112 409.8 261 77.8
vmacro12188 Vaccinium macrocarpon HOM05D004677 ORTHO05D005746 1.0e-111 407.1 248 80.6
BraA05t20266Z Brassica rapa HOM05D004677 ORTHO05D005746 1.3e-111 406.8 255 79.2
A04p24990 Brassica napus HOM05D004677 ORTHO05D005746 1.8e-111 406.4 241 83.8
Haze_12810 Corylus avellana HOM05D004677 ORTHO05D005746 2.3e-111 406.0 225 87.1
A05p13260 Brassica napus HOM05D004677 ORTHO05D005746 3.0e-111 405.6 255 79.2
TAR629G2143 Trochodendron aralioides HOM05D004677 ORTHO05D005746 3.0e-111 405.6 261 77.0
BcaB06g28600 Brassica carinata HOM05D004677 ORTHO05D005746 5.1e-111 404.8 241 83.4
MELO3C018827.2 Cucumis melo HOM05D004677 ORTHO05D005746 5.1e-111 404.8 256 77.7
BcaC02g11313 Brassica carinata HOM05D004677 ORTHO05D005746 6.7e-111 404.4 255 78.8
Eucgr.K00785 Eucalyptus grandis HOM05D004677 ORTHO05D005746 8.7e-111 404.1 237 81.9
Sp4g14870 Schrenkiella parvula HOM05D004677 ORTHO05D005746 8.7e-111 404.1 241 83.0
CARHR126350 Cardamine hirsuta HOM05D004677 ORTHO05D005746 1.1e-110 403.7 241 82.6
Rhsim06G0164500 Rhododendron simsii HOM05D004677 ORTHO05D005746 1.1e-110 403.7 250 80.4
Sed0004392 Sechium edule HOM05D004677 ORTHO05D005746 1.5e-110 403.3 270 75.2
C04p17150 Brassica napus HOM05D004677 ORTHO05D005746 2.5e-110 402.5 251 79.3
BolC4t23265H Brassica oleracea HOM05D004677 ORTHO05D005746 2.5e-110 402.5 251 79.3
Sc12g0002230 Simmondsia chinensis HOM05D004677 ORTHO05D005746 3.3e-110 402.1 257 77.0
ClCG02G002040 Citrullus lanatus HOM05D004677 ORTHO05D005746 7.4e-110 401.0 274 73.4
CSS0008737 Camellia sinensis var. sinensis HOM05D004677 ORTHO05D005746 1.3e-109 400.2 270 73.3
PSO675G6993 Papaver somniferum HOM05D004677 ORTHO05D005746 2.8e-109 399.1 235 81.3
Nitab4.5_0000006g0310 Nicotiana tabacum HOM05D004677 ORTHO05D005746 4.8e-109 398.3 260 74.2
Aqoxy1G03069 Aquilegia oxysepala HOM05D004677 ORTHO05D005746 1.4e-108 396.7 259 76.1
Hund06461 Selenicereus undatus HOM05D004677 ORTHO05D005746 2.4e-108 396.0 241 81.7
Lj3g0012150 Lotus japonicus HOM05D004677 ORTHO05D005746 4.1e-108 395.2 238 79.4
DCAR_019755 Daucus carota HOM05D004677 ORTHO05D005746 6.9e-108 394.4 241 78.4
Sopen05g026690 Solanum pennellii HOM05D004677 ORTHO05D005746 6.9e-108 394.4 249 76.7
Nitab4.5_0004702g0010 Nicotiana tabacum HOM05D004677 ORTHO05D005746 9.0e-108 394.0 258 74.4
Migut.M00416 Erythranthe guttata HOM05D004677 ORTHO05D005746 3.4e-107 392.1 256 75.4
EL10Ac9g22065 Beta vulgaris HOM05D004677 ORTHO05D005746 3.8e-106 388.7 253 76.7
BcaB02g10464 Brassica carinata HOM05D004677 ORTHO05D005746 3.8e-106 388.7 241 80.1
MBI10_g43118_MAGBIO Magnolia biondii HOM05D004677 ORTHO05D005746 3.8e-106 388.7 247 76.5
Hund00385 Selenicereus undatus HOM05D004677 ORTHO05D005746 5.0e-106 388.3 251 76.9
AUR62027103 Chenopodium quinoa HOM05D004677 ORTHO05D005746 6.5e-106 387.9 253 74.7
AUR62012879 Chenopodium quinoa HOM05D004677 ORTHO05D005746 8.5e-106 387.5 253 75.1
Cc05_g03990 Coffea canephora HOM05D004677 ORTHO05D005746 8.5e-106 387.5 250 77.6
Oeu027244.1 Olea europaea HOM05D004677 ORTHO05D005746 1.4e-105 386.7 245 76.3
HanXRQChr03g0073261 Helianthus annuus HOM05D004677 ORTHO05D005746 1.9e-105 386.3 256 75.4
Sed0023389 Sechium edule HOM05D004677 ORTHO05D005746 2.5e-105 386.0 240 78.3
Zm00001eb162930 Zea mays HOM05D004677 ORTHO05D005746 3.2e-105 385.6 277 70.8
Sabra14G0117500 Salix brachista HOM05D004677 ORTHO05D005746 3.6e-104 382.1 392 55.1
ATR0585G016 Amborella trichopoda HOM05D004677 ORTHO05D005746 7.9e-104 380.9 255 72.9
Cpa.g.sc572.2 Carica papaya HOM05D004677 ORTHO05D005746 2.3e-103 379.4 288 70.8
Gohir.A07G174750 Gossypium hirsutum HOM05D004677 ORTHO05D005746 3.0e-103 379.0 271 72.7
Os01g0531500 Oryza sativa ssp. japonica HOM05D004677 ORTHO05D005746 5.1e-103 378.3 242 74.8
Peaxi162Scf00462g00089 Petunia axillaris HOM05D004677 ORTHO05D005746 1.5e-102 376.7 267 70.8
MSTRG.14847 Avicennia marina HOM05D004677 ORTHO05D005746 3.3e-102 375.6 243 75.3
SEGI_04984 Sequoiadendron giganteum HOM05D004677 ORTHO05D005746 4.3e-102 375.2 260 71.9
Lsat_1_v5_gn_9_106900 Lactuca sativa HOM05D004677 ORTHO05D005746 1.7e-101 373.2 259 73.0
MBI10_g41369_MAGBIO Magnolia biondii HOM05D004677 ORTHO05D005746 5.3e-100 368.2 247 73.7
CDE02G1429 Ceratophyllum demersum HOM05D004677 ORTHO05D005746 6.9e-100 367.9 242 75.6
Lj1A770G43 Lonicera japonica HOM05D004677 ORTHO05D005746 2.6e-99 365.9 222 78.8
HPP92_020158 Vanilla planifolia HOM05D004677 ORTHO05D005746 2.6e-99 365.9 253 71.1
SGA_v2.0_scaffold34G13862 Striga asiatica HOM05D004677 ORTHO05D005746 9.4e-97 357.5 266 67.7
HanXRQChr15g0490311 Helianthus annuus HOM05D004677 ORTHO05D005746 1.2e-96 357.1 241 73.0
Lj3g0025926 Lotus japonicus HOM05D004677 ORTHO05D005746 3.9e-95 352.1 192 90.6
MBI10_g41368_MAGBIO Magnolia biondii HOM05D004677 ORTHO05D005746 6.7e-95 351.3 226 75.7
SGA_v2.0_scaffold445G51724 Striga asiatica HOM05D004677 ORTHO05D005746 4.5e-91 338.6 247 68.4
SGA_v2.0_scaffold186G40184 Striga asiatica HOM05D004677 ORTHO05D005746 5.9e-91 338.2 258 65.1
Mapoly0043s0053 Marchantia polymorpha HOM05D004677 ORTHO05D005746 2.2e-90 336.3 256 66.8
Lj5g0020236 Lotus japonicus HOM05D004677 ORTHO05D005746 1.6e-88 330.1 284 63.0
ECA240G0706 Erigeron canadensis HOM05D004677 ORTHO05D005746 3.6e-88 328.9 223 72.6
MBI10_g35587_MAGBIO Magnolia biondii HOM05D004677 ORTHO05D005746 8.8e-87 324.3 244 67.6
SMO351G0384 Selaginella moellendorffii HOM05D004677 ORTHO05D005746 2.2e-85 319.7 240 63.3
Lsat_1_v5_gn_9_106880 Lactuca sativa HOM05D004677 ORTHO05D005746 1.1e-84 317.4 239 67.4
CBR_g23740 Chara braunii HOM05D004677 ORTHO05D005746 2.5e-81 306.2 241 62.7
Pp3c16_5740 Physcomitrium patens HOM05D004677 ORTHO05D005746 2.5e-81 306.2 234 63.7
Solyc05g043430.4 Solanum lycopersicum HOM05D004677 ORTHO05D005746 4.0e-79 298.9 178 82.6
Lj2g0012873 Lotus japonicus HOM05D004677 ORTHO05D005746 1.6e-75 287.0 280 57.1
TAR627G1178 Trochodendron aralioides HOM05D004677 ORTHO05D005746 7.7e-75 284.6 189 72.5
MD09G1072400 Malus domestica HOM05D004677 ORTHO05D005746 1.0e-74 284.3 226 65.5
SHI10364 Sapria himalayana HOM05D004677 ORTHO05D005746 4.0e-71 272.3 190 70.5
Oeu036746.3 Olea europaea HOM05D004677 ORTHO05D005746 6.3e-69 265.0 241 58.1
Lj2g0026590 Lotus japonicus HOM05D004677 ORTHO05D005746 9.2e-68 261.2 295 51.9
Lj3g0001260 Lotus japonicus HOM05D004677 ORTHO05D005746 6.1e-64 248.4 271 52.8
HPP92_020157 Vanilla planifolia HOM05D004677 ORTHO05D005746 1.5e-62 243.8 221 58.4
AagrBONN_evm.TU.Sc2ySwM_117.68 Anthoceros agrestis HOM05D004677 ORTHO05D005746 3.9e-58 229.2 171 62.6
Nn1g03456 Nelumbo nucifera HOM05D004677 ORTHO05D005746 2.1e-56 223.4 144 77.8
unitig_0.g733 Utricularia gibba HOM05D004677 ORTHO05D005746 1.8e-55 220.3 135 81.5
MD17G1099100 Malus domestica HOM05D004677 ORTHO05D005746 3.2e-52 209.5 124 83.1
MCO13G274 Micromonas commoda HOM05D004677 ORTHO05D005746 6.6e-50 201.8 228 44.7
CDE08G1094 Ceratophyllum demersum HOM05D004677 ORTHO05D005746 8.3e-45 184.9 125 73.6
CDE08G0164 Ceratophyllum demersum HOM05D004677 ORTHO05D005746 6.0e-43 178.7 109 79.8
PRCOL_00005478 Prasinoderma coloniale HOM05D004677 ORTHO05D005746 7.8e-43 178.3 219 42.9
Cre06.g294000 Chlamydomonas reinhardtii HOM05D004677 ORTHO05D005746 1.0e-42 177.9 219 42.9
arahy.Tifrunner.gnm1.ann1.4D0QE2 Arachis hypogaea HOM05D004677 ORTHO05D005746 1.7e-37 160.6 116 71.6
arahy.Tifrunner.gnm1.ann1.65RE86 Arachis hypogaea HOM05D004677 ORTHO05D005746 2.3e-34 150.2 162 53.1
arahy.Tifrunner.gnm1.ann1.IJK42W Arachis hypogaea HOM05D004677 ORTHO05D005746 3.3e-33 146.4 116 64.7
SGA_v2.0_scaffold228G43250 Striga asiatica HOM05D004677 ORTHO05D005746 1.6e-32 144.1 86 75.6
Nn1g04350 Nelumbo nucifera HOM05D004677 ORTHO05D005746 2.1e-32 143.7 84 81.0
MD17G1099200 Malus domestica HOM05D004677 ORTHO05D005746 2.5e-25 120.2 83 75.9
Cre06.g258600 Chlamydomonas reinhardtii HOM05D004677 ORTHO05D005746 4.0e-23 112.8 250 31.2
DCAR_013148 Daucus carota HOM05D004677 ORTHO05D005746 4.0e-23 112.8 92 66.3
Nn3g18971 Nelumbo nucifera HOM05D004677 ORTHO05D005746 1.8e-18 97.4 65 69.2
arahy.Tifrunner.gnm1.ann1.B7RHXH Arachis hypogaea HOM05D004677 ORTHO05D005746 1.3e-16 91.3 165 40.6
AagrBONN_evm.TU.Sc2ySwM_117.4165 Anthoceros agrestis HOM05D004677 ORTHO05D005746 3.6e-16 89.7 86 53.5
FAN09G2974 Fragaria x ananassa HOM05D004677 ORTHO05D005746 9.9e-14 81.6 48 75.0
arahy.Tifrunner.gnm1.ann1.G1NRGV Arachis hypogaea HOM05D004677 ORTHO05D005746 4.2e-12 76.3 72 55.6
arahy.Tifrunner.gnm1.ann1.LRB7BH Arachis hypogaea HOM05D004677 ORTHO05D005746 1.2e-11 74.7 70 57.1
Nitab4.5_0005616g0010 Nicotiana tabacum HOM05D003774 ORTHO05D009174 1.1e-09 68.2 267 25.8
Aqoxy5G02648 Aquilegia oxysepala HOM05D003774 ORTHO05D009174 1.5e-09 67.8 233 27.5
Ciclev10001943m.g Citrus clementina HOM05D003774 ORTHO05D009174 4.3e-09 66.2 244 27.0
VMungo1080G0925 Vigna mungo HOM05D003774 ORTHO05D009174 7.4e-09 65.5 253 28.1
Nitab4.5_0001463g0050 Nicotiana tabacum HOM05D003774 ORTHO05D009174 1.3e-08 64.7 235 25.5
Sopen11g022610 Solanum pennellii HOM05D003774 ORTHO05D009174 2.1e-08 63.9 238 26.1
PGSC0003DMG402025647 Solanum tuberosum HOM05D003774 ORTHO05D009174 3.7e-08 63.2 238 26.1
Sabra13G0091200 Salix brachista HOM05D003774 ORTHO05D009174 8.1e-08 62.0 241 29.0
Pp3c3_11190 Physcomitrium patens HOM05D005182 ORTHO05D006631 1.1e-07 61.6 174 28.7
Solyc11g027840.2 Solanum lycopersicum HOM05D003774 ORTHO05D009174 1.4e-07 61.2 238 25.6
TWI59G1355 Tripterygium wilfordii HOM05D003774 ORTHO05D009174 1.4e-07 61.2 232 29.3
PGR042G3286 Punica granatum HOM05D003774 ORTHO05D009174 1.8e-07 60.8 244 28.3
MBI09_g10676_MAGBIO Magnolia biondii HOM05D003774 ORTHO05D009174 5.3e-07 59.3 233 27.5
CANSAT25G3020 Cannabis sativa HOM05D003774 ORTHO05D009174 1.5e-06 57.8 236 28.8
Lsat_1_v5_gn_1_25820 Lactuca sativa HOM05D003774 ORTHO05D009174 2.0e-06 57.4 248 26.2
arahy.Tifrunner.gnm1.ann1.WARH89 Arachis hypogaea HOM05D004677 ORTHO05D005746 2.6e-06 57.0 27 92.6
DCAR_003529 Daucus carota HOM05D003774 ORTHO05D009174 2.6e-06 57.0 238 26.5
Potri.019G079000 Populus trichocarpa HOM05D003774 ORTHO05D009174 3.4e-06 56.6 226 29.6
Mapoly0091s0038 Marchantia polymorpha HOM05D001214 ORTHO05D001029 4.5e-06 56.2 170 34.7
CiPaw.07G235700 Carya illinoinensis HOM05D003774 ORTHO05D009174 5.8e-06 55.8 209 30.1
Cfa012969 Carpinus fangiana HOM05D003774 ORTHO05D009174 1.0e-05 55.1 209 30.6


User provided reference genes

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