Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.011G101300 Phaseolus vulgaris HOM05D003691 ORTHO05D004288 0.0e+00 1303.1 670 100.0
VMungo1127G0496 Vigna mungo HOM05D003691 ORTHO05D004288 0.0e+00 1196.4 671 92.8
Glyma.06G308100 Glycine max HOM05D003691 ORTHO05D004288 0.0e+00 1137.9 670 86.3
Glyma.12G096700 Glycine max HOM05D003691 ORTHO05D004288 0.0e+00 1123.2 670 84.8
Lalb_Chr03g0028581 Lupinus albus HOM05D003691 ORTHO05D004288 2.9e-293 1011.5 680 77.1
Medtr4g050060 Medicago truncatula HOM05D003691 ORTHO05D004288 1.6e-291 1005.7 672 77.2
Lj3g0007999 Lotus japonicus HOM05D003691 ORTHO05D004288 1.4e-287 992.6 674 75.8
TPR.G4630 Trifolium pratense HOM05D003691 ORTHO05D004288 1.2e-286 989.6 687 75.4
arahy.Tifrunner.gnm1.ann1.AS5DTW Arachis hypogaea HOM05D003691 ORTHO05D004288 3.4e-281 971.5 677 74.6
arahy.Tifrunner.gnm1.ann1.4D79G7 Arachis hypogaea HOM05D003691 ORTHO05D004288 4.9e-280 967.6 677 74.3
Psat7g203760 Pisum sativum HOM05D003691 ORTHO05D004288 3.2e-271 938.3 670 72.8
Ca_19493_v3 Cicer arietinum L. HOM05D003691 ORTHO05D004288 5.8e-265 917.5 683 71.4
Glyma.12G191300 Glycine max HOM05D003691 ORTHO05D004288 2.7e-246 855.5 681 65.3
TPR.G4243 Trifolium pratense HOM05D003691 ORTHO05D004288 1.1e-239 833.6 682 65.4
Medtr2g087880 Medicago truncatula HOM05D003691 ORTHO05D004288 7.4e-236 820.8 665 64.5
Haze_12800 Corylus avellana HOM05D003691 ORTHO05D004288 2.8e-235 818.9 674 64.1
MD09G1071300 Malus domestica HOM05D003691 ORTHO05D004288 9.0e-234 813.9 665 64.4
Phvul.005G116900 Phaseolus vulgaris HOM05D003691 ORTHO05D004288 1.2e-233 813.5 678 65.2
Psat5g261240 Pisum sativum HOM05D003691 ORTHO05D004288 1.2e-233 813.5 673 64.8
Prupe.3G213700 Prunus persica HOM05D003691 ORTHO05D004288 1.2e-233 813.5 666 65.2
CiPaw.03G157800 Carya illinoinensis HOM05D003691 ORTHO05D004288 1.2e-230 803.5 671 63.9
GSVIVG01030475001 Vitis vinifera HOM05D003691 ORTHO05D004288 1.6e-230 803.1 666 63.5
QL08p031532 Quercus lobata HOM05D003691 ORTHO05D004288 4.6e-230 801.6 662 64.8
VMungo1080G0849 Vigna mungo HOM05D003691 ORTHO05D004288 6.1e-230 801.2 666 64.0
CANSAT64G0165 Cannabis sativa HOM05D003691 ORTHO05D004288 1.1e-228 797.0 666 63.4
TWI75G0495 Tripterygium wilfordii HOM05D003691 ORTHO05D004288 5.7e-228 794.7 664 61.4
Duzib138G0684 Durio zibethinus HOM05D003691 ORTHO05D004288 8.2e-227 790.8 663 62.6
Hma1.2p1_0895F.1_g233770 Hydrangea macrophylla HOM05D003691 ORTHO05D004288 9.0e-226 787.3 677 61.3
Ca_01616_v3 Cicer arietinum L. HOM05D003691 ORTHO05D004288 2.0e-225 786.2 699 62.5
Manes.04G099700 Manihot esculenta HOM05D003691 ORTHO05D004288 1.1e-223 780.4 666 62.3
TAR624G0007 Trochodendron aralioides HOM05D003691 ORTHO05D004288 2.5e-223 779.2 666 61.1
Thecc.01G178100 Theobroma cacao HOM05D003691 ORTHO05D004288 5.5e-223 778.1 663 62.1
FAN14G5114 Fragaria x ananassa HOM05D003691 ORTHO05D004288 2.7e-222 775.8 666 61.7
FAN05G1959 Fragaria x ananassa HOM05D003691 ORTHO05D004288 4.6e-222 775.0 666 61.6
TWI36G1355 Tripterygium wilfordii HOM05D003691 ORTHO05D004288 6.1e-222 774.6 666 61.0
Dinv39731 Davidia involucrata HOM05D003691 ORTHO05D004288 7.9e-222 774.2 670 61.3
RcHm_v2.0_Chr2g0158621 Rosa chinensis HOM05D003691 ORTHO05D004288 7.9e-222 774.2 668 62.4
FAN09G0430 Fragaria x ananassa HOM05D003691 ORTHO05D004288 9.7e-220 767.3 668 61.2
Potri.014G155900 Populus trichocarpa HOM05D003691 ORTHO05D004288 1.3e-219 766.9 667 62.1
Dinv08745 Davidia involucrata HOM05D003691 ORTHO05D004288 8.2e-219 764.2 663 60.8
Duzib211G0477 Durio zibethinus HOM05D003691 ORTHO05D004288 1.8e-218 763.1 662 61.2
FvH4_6g42730 Fragaria vesca HOM05D003691 ORTHO05D004288 1.8e-218 763.1 676 60.7
vmacro09345 Vaccinium macrocarpon HOM05D003691 ORTHO05D004288 1.8e-218 763.1 680 59.4
ClCG02G009060 Citrullus lanatus HOM05D003691 ORTHO05D004288 7.7e-217 757.7 662 61.6
Gohir.D07G088400 Gossypium hirsutum HOM05D003691 ORTHO05D004288 7.7e-217 757.7 663 61.2
Sed0022442 Sechium edule HOM05D003691 ORTHO05D004288 1.3e-216 756.9 662 61.2
Sabra14G0117900 Salix brachista HOM05D003691 ORTHO05D004288 2.2e-216 756.1 667 60.9
Atru.chr6.3228 Acer truncatum HOM05D003691 ORTHO05D004288 6.5e-216 754.6 674 59.6
Gorai.001G094600 Gossypium raimondii HOM05D003691 ORTHO05D004288 2.5e-215 752.7 673 60.3
Gohir.A07G081900 Gossypium hirsutum HOM05D003691 ORTHO05D004288 3.2e-215 752.3 673 60.2
Nn1g03443 Nelumbo nucifera HOM05D003691 ORTHO05D004288 3.2e-215 752.3 679 59.4
LjContig00274_ERROPOS1100000g0006521 Lotus japonicus HOM05D003691 ORTHO05D004288 7.2e-215 751.1 600 65.3
Rhsim04G0052200 Rhododendron simsii HOM05D003691 ORTHO05D004288 4.7e-214 748.4 683 59.0
PGR042G1566 Punica granatum HOM05D003691 ORTHO05D004288 1.8e-213 746.5 666 61.3
CsaV3_2G034670 Cucumis sativus L. HOM05D003691 ORTHO05D004288 5.1e-213 745.0 662 60.7
MELO3C019300.2 Cucumis melo HOM05D003691 ORTHO05D004288 2.0e-212 743.0 662 60.6
Ciclev10014542m.g Citrus clementina HOM05D003691 ORTHO05D004288 3.3e-212 742.3 667 60.0
FAN02G0990 Fragaria x ananassa HOM05D003691 ORTHO05D004288 2.8e-211 739.2 666 60.2
MBI07_g01730_MAGBIO Magnolia biondii HOM05D003691 ORTHO05D004288 1.4e-210 736.9 647 59.8
THA.LOC104816038 Tarenaya hassleriana HOM05D003691 ORTHO05D004288 1.7e-208 729.9 674 59.3
CARHR126440 Cardamine hirsuta HOM05D003691 ORTHO05D004288 4.2e-207 725.3 680 59.0
AL4G27990 Arabidopsis lyrata HOM05D003691 ORTHO05D004288 7.2e-207 724.5 675 58.4
Sp4g14920 Schrenkiella parvula HOM05D003691 ORTHO05D004288 1.2e-206 723.8 677 58.9
QL08p006881 Quercus lobata HOM05D003691 ORTHO05D004288 1.0e-205 720.7 664 58.9
Sc12g0002210 Simmondsia chinensis HOM05D003691 ORTHO05D004288 1.4e-205 720.3 678 58.1
PSO210G5093 Papaver somniferum HOM05D003691 ORTHO05D004288 3.0e-205 719.2 664 58.4
A05p13290 Brassica napus HOM05D003691 ORTHO05D004288 3.9e-205 718.8 676 57.8
Thhalv10016359m.g Eutrema salsugineum HOM05D003691 ORTHO05D004288 3.9e-205 718.8 675 58.5
Oeu027232.1 Olea europaea HOM05D003691 ORTHO05D004288 8.8e-205 717.6 661 58.4
BraA05t20270Z Brassica rapa HOM05D003691 ORTHO05D004288 1.1e-204 717.2 676 57.5
MSTRG.14857 Avicennia marina HOM05D003691 ORTHO05D004288 1.5e-204 716.8 667 58.5
A04p25040 Brassica napus HOM05D003691 ORTHO05D004288 3.3e-204 715.7 675 57.8
Eucgr.A01107 Eucalyptus grandis HOM05D003691 ORTHO05D004288 3.3e-204 715.7 673 58.7
C04p17080 Brassica napus HOM05D003691 ORTHO05D004288 4.4e-204 715.3 674 57.7
Migut.M00432 Erythranthe guttata HOM05D003691 ORTHO05D004288 9.7e-204 714.1 677 56.7
AT2G32590 Arabidopsis thaliana HOM05D003691 ORTHO05D004288 8.2e-203 711.1 677 57.8
BraA04t18015Z Brassica rapa HOM05D003691 ORTHO05D004288 3.1e-202 709.1 675 57.5
DCAR_019753 Daucus carota HOM05D003691 ORTHO05D004288 3.1e-202 709.1 663 58.1
Aqoxy1G03453 Aquilegia oxysepala HOM05D003691 ORTHO05D004288 7.0e-202 708.0 681 57.1
Carub.0004s1392 Capsella rubella HOM05D003691 ORTHO05D004288 7.0e-202 708.0 675 58.2
TAR626G1388 Trochodendron aralioides HOM05D003691 ORTHO05D004288 2.0e-201 706.4 601 61.6
SGA_v2.0_scaffold70G23393 Striga asiatica HOM05D003691 ORTHO05D004288 2.6e-201 706.1 666 58.4
BolC4t23260H Brassica oleracea HOM05D003691 ORTHO05D004288 4.5e-201 705.3 689 56.5
PGSC0003DMG400001077 Solanum tuberosum HOM05D003691 ORTHO05D004288 8.5e-200 701.0 666 56.9
Sopen07g025100 Solanum pennellii HOM05D003691 ORTHO05D004288 2.1e-198 696.4 660 57.1
Lsat_1_v5_gn_7_93200 Lactuca sativa HOM05D003691 ORTHO05D004288 5.2e-197 691.8 671 57.8
Solyc07g049680.4 Solanum lycopersicum HOM05D003691 ORTHO05D004288 5.2e-197 691.8 660 56.8
Prupe.4G220400 Prunus persica HOM05D003691 ORTHO05D004288 2.0e-196 689.9 673 57.1
Lj8A127T48 Lonicera japonica HOM05D003691 ORTHO05D004288 9.8e-196 687.6 591 61.3
DCAR_021155 Daucus carota HOM05D003691 ORTHO05D004288 2.2e-195 686.4 663 56.7
Nitab4.5_0015742g0010 Nicotiana tabacum HOM05D003691 ORTHO05D004288 2.8e-195 686.0 674 57.4
ECA240G1119 Erigeron canadensis HOM05D003691 ORTHO05D004288 7.0e-194 681.4 675 55.7
THA.LOC104826143 Tarenaya hassleriana HOM05D003691 ORTHO05D004288 3.8e-192 675.6 684 55.4
HanXRQChr04g0126971 Helianthus annuus HOM05D003691 ORTHO05D004288 8.5e-192 674.5 673 57.1
Nitab4.5_0000130g0240 Nicotiana tabacum HOM05D003691 ORTHO05D004288 1.5e-191 673.7 676 56.5
Aa31LG5G4740 Aethionema arabicum HOM05D003691 ORTHO05D004288 1.9e-191 673.3 677 55.1
SalBow7G1078 Salvia bowleyana HOM05D003691 ORTHO05D004288 4.2e-191 672.2 691 54.7
Hund02023 Selenicereus undatus HOM05D003691 ORTHO05D004288 1.6e-190 670.2 714 53.8
CAN.G290.10 Capsicum annuum HOM05D003691 ORTHO05D004288 1.8e-189 666.8 662 55.3
Cfa020301 Carpinus fangiana HOM05D003691 ORTHO05D004288 4.4e-188 662.1 687 54.7
EL10Ac4g07751 Beta vulgaris HOM05D003691 ORTHO05D004288 9.8e-188 661.0 688 53.6
ECA236G1051 Erigeron canadensis HOM05D003691 ORTHO05D004288 1.3e-187 660.6 671 55.9
Atru.chr2.3500 Acer truncatum HOM05D003691 ORTHO05D004288 2.2e-187 659.8 687 53.9
Cc05_g03670 Coffea canephora HOM05D003691 ORTHO05D004288 3.7e-187 659.1 707 53.9
AUR62015833 Chenopodium quinoa HOM05D003691 ORTHO05D004288 2.4e-186 656.4 700 53.4
Thecc.07G031000 Theobroma cacao HOM05D003691 ORTHO05D004288 3.8e-184 649.0 667 54.4
Ciclev10007620m.g Citrus clementina HOM05D003691 ORTHO05D004288 7.0e-178 628.2 699 51.1
Ah.06g182530 Amaranthus hybridus HOM05D003691 ORTHO05D004288 2.7e-177 626.3 689 52.0
Lsat_1_v5_gn_9_106740 Lactuca sativa HOM05D003691 ORTHO05D004288 1.5e-175 620.5 665 52.9
FvH4_3g23280 Fragaria vesca HOM05D003691 ORTHO05D004288 7.3e-175 618.2 654 54.3
RcHm_v2.0_Chr5g0041001 Rosa chinensis HOM05D003691 ORTHO05D004288 1.6e-174 617.1 658 54.6
ATR0317G123 Amborella trichopoda HOM05D003691 ORTHO05D004288 6.2e-174 615.1 665 53.1
Peaxi162Scf00007g00129 Petunia axillaris HOM05D003691 ORTHO05D004288 2.7e-169 599.7 660 52.3
MD11G1212100 Malus domestica HOM05D003691 ORTHO05D004288 1.1e-167 594.3 637 52.7
FAN21G2044 Fragaria x ananassa HOM05D003691 ORTHO05D004288 1.2e-161 574.3 654 52.4
BcaB06g28606 Brassica carinata HOM05D003691 ORTHO05D004288 1.0e-160 571.2 675 49.9
Haze_09719 Corylus avellana HOM05D003691 ORTHO05D004288 3.0e-160 569.7 740 46.9
BcaB02g10460 Brassica carinata HOM05D003691 ORTHO05D004288 6.6e-160 568.5 509 60.1
BcaB06g28605 Brassica carinata HOM05D003691 ORTHO05D004288 9.5e-159 564.7 627 53.3
HPP92_023149 Vanilla planifolia HOM05D003691 ORTHO05D004288 1.6e-158 563.9 654 49.7
Cpa.g.sc87.104 Carica papaya HOM05D003691 ORTHO05D004288 4.7e-158 562.4 517 58.6
Zm00001eb162990 Zea mays HOM05D003691 ORTHO05D004288 1.4e-154 550.8 669 48.9
Hund02022 Selenicereus undatus HOM05D003691 ORTHO05D004288 4.6e-153 545.8 697 46.9
CSS0013476 Camellia sinensis var. sinensis HOM05D003691 ORTHO05D004288 1.0e-152 544.7 502 57.2
Hund02025 Selenicereus undatus HOM05D003691 ORTHO05D004288 3.3e-151 539.7 697 46.6
FAN11G2344 Fragaria x ananassa HOM05D003691 ORTHO05D004288 2.6e-148 530.0 596 51.5
GSVIVG01037701001 Vitis vinifera HOM05D003691 ORTHO05D004288 2.2e-147 526.9 650 47.7
CiPaw.11G193000 Carya illinoinensis HOM05D003691 ORTHO05D004288 1.3e-142 511.1 509 55.6
AUR62020387 Chenopodium quinoa HOM05D003691 ORTHO05D004288 1.4e-141 507.7 684 45.9
BolC4t27689H Brassica oleracea HOM05D003691 ORTHO05D004288 1.7e-139 500.7 524 53.1
Lalb_Chr19g0136071 Lupinus albus HOM05D003691 ORTHO05D004288 2.8e-134 483.4 369 72.1
Lalb_Chr19g0136061 Lupinus albus HOM05D003691 ORTHO05D004288 9.0e-133 478.4 288 79.2
unitig_60.g25819 Utricularia gibba HOM05D003691 ORTHO05D004288 2.4e-130 470.3 670 44.9
Dinv22243 Davidia involucrata HOM05D003691 ORTHO05D004288 3.9e-128 463.0 550 50.9
C04p62100 Brassica napus HOM05D003691 ORTHO05D004288 5.6e-127 459.1 458 57.0
Gohir.A07G186000 Gossypium hirsutum HOM05D003691 ORTHO05D004288 4.2e-122 443.0 441 56.0
COL.COLO4_09704 Corchorus olitorius HOM05D003691 ORTHO05D004288 7.1e-122 442.2 501 52.1
BcaC02g07908 Brassica carinata HOM05D003691 ORTHO05D004288 4.6e-121 439.5 651 43.3
AUR62015832 Chenopodium quinoa HOM05D003691 ORTHO05D004288 2.0e-116 424.1 607 44.0
Actinidia10811 Actinidia chinensis HOM05D003691 ORTHO05D004288 1.3e-115 421.4 444 55.0
Pp3c11_22430 Physcomitrium patens HOM05D003691 ORTHO05D004288 4.6e-113 412.9 688 39.5
SEGI_30766 Sequoiadendron giganteum HOM05D003691 ORTHO05D004288 4.3e-111 406.4 564 45.9
Lj8A171G44 Lonicera japonica HOM05D003691 ORTHO05D004288 2.9e-107 393.7 486 48.1
Mapoly0002s0133 Marchantia polymorpha HOM05D003691 ORTHO05D004288 2.9e-107 393.7 677 39.4
AagrBONN_evm.TU.Sc2ySwM_228.2537 Anthoceros agrestis HOM05D003691 ORTHO05D004288 3.0e-104 383.6 712 38.6
AUR62020385 Chenopodium quinoa HOM05D003691 ORTHO05D004288 6.7e-104 382.5 328 63.1
SEGI_37895 Sequoiadendron giganteum HOM05D003691 ORTHO05D004288 2.9e-99 367.1 566 42.6
Oeu036739.1 Olea europaea HOM05D003691 ORTHO05D004288 9.4e-98 362.1 266 71.1
CBR_g26183 Chara braunii HOM05D003691 ORTHO05D004288 6.1e-89 332.8 783 34.1
Pp3c7_4280 Physcomitrium patens HOM05D003691 ORTHO05D004288 3.3e-87 327.0 689 36.7
FAN25G2100 Fragaria x ananassa HOM05D003691 ORTHO05D004288 4.4e-87 326.6 285 61.4
MD03G1195700 Malus domestica HOM05D003691 ORTHO05D004288 1.1e-85 322.0 407 46.2
MD17G1101300 Malus domestica HOM05D003691 ORTHO05D004288 8.8e-72 275.8 262 59.9
SHI10368 Sapria himalayana HOM05D003691 ORTHO05D004288 4.4e-71 273.5 410 42.2
FAN25G2879 Fragaria x ananassa HOM05D003691 ORTHO05D004288 3.7e-70 270.4 354 47.5
MCO04G245 Micromonas commoda HOM05D003691 ORTHO05D004288 2.5e-66 257.7 626 32.7
Os01g0532800 Oryza sativa ssp. japonica HOM05D003691 ORTHO05D004288 3.6e-65 253.8 280 47.9
PRCOL_00002032 Prasinoderma coloniale HOM05D003691 ORTHO05D004288 5.2e-64 250.0 611 33.9
Actinidia10812 Actinidia chinensis HOM05D003691 ORTHO05D004288 1.4e-53 215.3 208 53.4
CDE09G1127 Ceratophyllum demersum HOM05D003691 ORTHO05D004288 1.2e-44 185.7 230 50.9
Sed0010458 Sechium edule HOM05D003691 ORTHO05D004288 3.9e-43 180.6 242 44.2
Cfa026695 Carpinus fangiana HOM05D003691 ORTHO05D004288 2.0e-39 168.3 727 26.3
Lj8A171G43 Lonicera japonica HOM05D003691 ORTHO05D004288 4.1e-37 160.6 151 54.3
C04p62090 Brassica napus HOM05D003691 ORTHO05D004288 6.6e-27 126.7 131 53.4
MD03G1195600 Malus domestica HOM05D003691 ORTHO05D004288 1.9e-26 125.2 163 47.2
SEGI_16706 Sequoiadendron giganteum HOM05D003691 ORTHO05D017750 9.9e-23 112.8 115 53.9
arahy.Tifrunner.gnm1.ann1.NAA2I0 Arachis hypogaea HOM05D003691 ORTHO05D004288 3.2e-21 107.8 61 88.5
Dinv22244 Davidia involucrata HOM05D007542 ORTHO05D009519 7.9e-20 103.2 80 60.0
CAN.G574.39 Capsicum annuum HOM05D003691 ORTHO05D004288 5.6e-18 97.1 88 54.5
TPR.G2961 Trifolium pratense HOM05D001978 ORTHO05D003036 1.3e-17 95.9 83 56.6
SHI10371 Sapria himalayana HOM05D003691 ORTHO05D004288 2.1e-17 95.1 90 62.2
Glyma.13G310451 Glycine max HOM05D003691 ORTHO05D004288 9.0e-16 89.7 49 81.6
EL10Ac4g08622 Beta vulgaris HOM05D003691 ORTHO05D019836 2.6e-15 88.2 84 56.0
SEGI_15855 Sequoiadendron giganteum HOM05D003691 ORTHO05D004288 4.5e-15 87.4 122 43.4
Lj8A127T49 Lonicera japonica HOM05D003691 ORTHO05D004288 4.9e-14 84.0 75 60.0
CAN.G574.40 Capsicum annuum HOM05D003691 ORTHO05D004288 6.4e-14 83.6 68 54.4
ATR0772G025 Amborella trichopoda HOM05D003691 ORTHO05D004288 1.9e-13 82.0 87 47.1
TPR.G35222 Trifolium pratense HOM05D003691 ORTHO05D004288 1.6e-12 79.0 60 63.3
SHI10370 Sapria himalayana HOM05D000105 ORTHO05D000023 2.3e-11 75.1 49 75.5
FAN16G1928 Fragaria x ananassa HOM05D003691 ORTHO05D004288 5.1e-11 73.9 84 48.8
Rhsim07G0255900 Rhododendron simsii HOM05D000234 ORTHO05D004288 5.1e-11 73.9 104 39.4
Actinidia03601 Actinidia chinensis HOM05D003691 ORTHO05D004288 1.9e-10 72.0 54 59.3
MD17G1101000 Malus domestica HOM05D003691 ORTHO05D004288 8.2e-09 66.6 45 68.9
MD17G1101200 Malus domestica HOM05D003691 ORTHO05D004288 1.8e-08 65.5 79 44.3
Cre13.g589300 Chlamydomonas reinhardtii HOM05D003691 ORTHO05D004288 1.5e-07 62.4 205 22.4
Dinv17119 Davidia involucrata HOM05D003691 ORTHO05D004288 7.6e-07 60.1 80 42.5


User provided reference genes

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