Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.011G096400 Phaseolus vulgaris HOM05D005659 ORTHO05D007059 7.4e-77 290.4 142 100.0
VMungo1127G0741 Vigna mungo HOM05D005659 ORTHO05D007059 4.6e-71 271.2 142 92.3
Glyma.12G092000 Glycine max HOM05D005659 ORTHO05D007059 1.3e-68 263.1 142 89.4
Glyma.11G181100 Glycine max HOM05D005659 ORTHO05D007059 1.5e-66 256.1 142 88.0
Lj3g0027363 Lotus japonicus HOM05D005659 ORTHO05D007059 1.6e-63 246.1 142 81.7
Lalb_Chr03g0028281 Lupinus albus HOM05D005659 ORTHO05D007059 1.3e-60 236.5 142 80.3
Psat7g186640 Pisum sativum HOM05D005659 ORTHO05D007059 1.2e-58 229.9 140 77.9
arahy.Tifrunner.gnm1.ann1.QDSR7W Arachis hypogaea HOM05D005659 ORTHO05D007059 1.5e-58 229.6 142 78.9
Sed0025059 Sechium edule HOM05D005659 ORTHO05D007059 2.0e-58 229.2 138 79.7
arahy.Tifrunner.gnm1.ann1.MVQ7LV Arachis hypogaea HOM05D005659 ORTHO05D007059 1.3e-57 226.5 142 77.5
Ca_26075_v3 Cicer arietinum L. HOM05D005659 ORTHO05D007059 1.3e-57 226.5 141 77.3
CAN.G919.41 Capsicum annuum HOM05D005659 ORTHO05D007059 3.2e-56 221.9 144 74.3
Medtr4g052420 Medicago truncatula HOM05D005659 ORTHO05D007059 1.6e-55 219.5 140 75.7
TPR.G17220 Trifolium pratense HOM05D005659 ORTHO05D007059 1.6e-55 219.5 142 74.6
Cpa.g.sc195.32 Carica papaya HOM05D005659 ORTHO05D007059 2.1e-55 219.2 144 75.0
AT1G08380 Arabidopsis thaliana HOM05D005659 ORTHO05D007059 1.3e-54 216.5 137 75.9
CsaV3_1G015100 Cucumis sativus L. HOM05D005659 ORTHO05D007059 1.3e-54 216.5 146 74.0
Solyc06g074200.4 Solanum lycopersicum HOM05D005659 ORTHO05D007059 2.3e-54 215.7 145 73.1
Sopen06g030620 Solanum pennellii HOM05D005659 ORTHO05D007059 2.3e-54 215.7 145 73.1
PGSC0003DMG400005890 Solanum tuberosum HOM05D005659 ORTHO05D007059 2.3e-54 215.7 145 73.1
BcaC07g42532 Brassica carinata HOM05D005659 ORTHO05D007059 3.0e-54 215.3 137 74.5
Carub.0001s0773 Capsella rubella HOM05D005659 ORTHO05D007059 3.0e-54 215.3 137 75.2
Ciclev10029515m.g Citrus clementina HOM05D005659 ORTHO05D007059 3.0e-54 215.3 139 77.0
CiPaw.14G097600 Carya illinoinensis HOM05D005659 ORTHO05D007059 3.9e-54 214.9 144 74.3
TWI75G1160 Tripterygium wilfordii HOM05D005659 ORTHO05D007059 3.9e-54 214.9 145 75.9
DCAR_012226 Daucus carota HOM05D005659 ORTHO05D007059 5.1e-54 214.5 150 70.0
Eucgr.B03824 Eucalyptus grandis HOM05D005659 ORTHO05D007059 6.7e-54 214.2 145 74.5
Sp1g07030 Schrenkiella parvula HOM05D005659 ORTHO05D007059 1.5e-53 213.0 137 74.5
CANSAT54G0546 Cannabis sativa HOM05D005659 ORTHO05D007059 1.9e-53 212.6 140 73.6
A09p65930 Brassica napus HOM05D005659 ORTHO05D007059 2.5e-53 212.2 137 73.0
BraA09t41937Z Brassica rapa HOM05D005659 ORTHO05D007059 2.5e-53 212.2 137 73.0
CARHR008270 Cardamine hirsuta HOM05D005659 ORTHO05D007059 2.5e-53 212.2 136 74.3
Haze_23342 Corylus avellana HOM05D005659 ORTHO05D007059 2.5e-53 212.2 144 72.9
Cfa009983 Carpinus fangiana HOM05D005659 ORTHO05D007059 3.3e-53 211.8 144 70.8
Peaxi162Scf00091g00713 Petunia axillaris HOM05D005659 ORTHO05D007059 3.3e-53 211.8 145 70.3
PGR102G0055 Punica granatum HOM05D005659 ORTHO05D007059 3.3e-53 211.8 139 75.5
Aa31sc785G10 Aethionema arabicum HOM05D005659 ORTHO05D007059 4.3e-53 211.5 143 71.3
MD11G1169900 Malus domestica HOM05D005659 ORTHO05D007059 4.3e-53 211.5 136 75.7
Potri.004G199400 Populus trichocarpa HOM05D005659 ORTHO05D007059 4.3e-53 211.5 145 72.4
Sabra04G0134500 Salix brachista HOM05D005659 ORTHO05D007059 4.3e-53 211.5 145 72.4
BcaB07g34086 Brassica carinata HOM05D005659 ORTHO05D007059 5.7e-53 211.1 137 73.7
C05p06520 Brassica napus HOM05D005659 ORTHO05D007059 5.7e-53 211.1 137 73.7
BolC5t29412H Brassica oleracea HOM05D005659 ORTHO05D007059 5.7e-53 211.1 137 73.7
Sabra09G0125800 Salix brachista HOM05D005659 ORTHO05D007059 5.7e-53 211.1 147 72.8
BolC8t52533H Brassica oleracea HOM05D005659 ORTHO05D007059 7.4e-53 210.7 137 72.3
MBI17_g28186_MAGBIO Magnolia biondii HOM05D005659 ORTHO05D007059 9.7e-53 210.3 143 72.7
Manes.04G000900 Manihot esculenta HOM05D005659 ORTHO05D007059 9.7e-53 210.3 148 71.6
BcaB03g13338 Brassica carinata HOM05D005659 ORTHO05D007059 1.3e-52 209.9 137 73.0
Hma1.2p1_2164F.1_g315750 Hydrangea macrophylla HOM05D005659 ORTHO05D007059 1.6e-52 209.5 149 68.5
MD03G1150500 Malus domestica HOM05D005659 ORTHO05D007059 1.6e-52 209.5 136 75.0
Sc12g0004680 Simmondsia chinensis HOM05D005659 ORTHO05D007059 1.6e-52 209.5 145 71.0
BcaC07g41946 Brassica carinata HOM05D005659 ORTHO05D007059 2.2e-52 209.1 137 72.3
A06p05400 Brassica napus HOM05D005659 ORTHO05D007059 2.2e-52 209.1 141 71.6
C08p50030 Brassica napus HOM05D005659 ORTHO05D007059 2.2e-52 209.1 137 72.3
BraA06t23749Z Brassica rapa HOM05D005659 ORTHO05D007059 2.2e-52 209.1 141 71.6
Oeu002356.1 Olea europaea HOM05D005659 ORTHO05D007059 2.8e-52 208.8 149 69.8
AL1G18790 Arabidopsis lyrata HOM05D005659 ORTHO05D007059 4.8e-52 208.0 122 80.3
EL10Ac4g08175 Beta vulgaris HOM05D005659 ORTHO05D007059 4.8e-52 208.0 140 72.1
A08p35240 Brassica napus HOM05D005659 ORTHO05D007059 4.8e-52 208.0 133 74.4
Potri.009G160800 Populus trichocarpa HOM05D005659 ORTHO05D007059 1.1e-51 206.8 146 69.9
Thecc.09G277800 Theobroma cacao HOM05D005659 ORTHO05D007059 1.1e-51 206.8 142 71.8
Gohir.D05G082100 Gossypium hirsutum HOM05D005659 ORTHO05D007059 3.1e-51 205.3 142 70.4
HanXRQChr04g0128561 Helianthus annuus HOM05D005659 ORTHO05D007059 4.1e-51 204.9 144 69.4
THA.LOC104826438 Tarenaya hassleriana HOM05D005659 ORTHO05D007059 4.1e-51 204.9 139 71.2
Prupe.6G137400 Prunus persica HOM05D005659 ORTHO05D007059 5.3e-51 204.5 138 74.6
Gohir.A05G079200 Gossypium hirsutum HOM05D005659 ORTHO05D007059 6.9e-51 204.1 142 70.4
GSVIVG01036077001 Vitis vinifera HOM05D005659 ORTHO05D007059 9.1e-51 203.8 151 68.9
CDE02G1582 Ceratophyllum demersum HOM05D005659 ORTHO05D007059 1.2e-50 203.4 141 69.5
Gorai.009G083700 Gossypium raimondii HOM05D005659 ORTHO05D007059 1.2e-50 203.4 142 69.7
Nitab4.5_0006903g0010 Nicotiana tabacum HOM05D005659 ORTHO05D007059 1.5e-50 203.0 138 71.7
CDE08G1285 Ceratophyllum demersum HOM05D005659 ORTHO05D007059 2.0e-50 202.6 141 69.5
Dinv22811 Davidia involucrata HOM05D005659 ORTHO05D007059 2.0e-50 202.6 118 78.0
Atru.chr3.3161 Acer truncatum HOM05D005659 ORTHO05D007059 3.4e-50 201.8 146 69.2
PSO339G3866 Papaver somniferum HOM05D005659 ORTHO05D007059 4.5e-50 201.4 140 70.7
PSO384G5049 Papaver somniferum HOM05D005659 ORTHO05D007059 4.5e-50 201.4 140 70.7
MELO3C025587.2 Cucumis melo HOM05D005659 ORTHO05D007059 1.0e-49 200.3 176 60.2
SalBow6G0820 Salvia bowleyana HOM05D005659 ORTHO05D007059 1.0e-49 200.3 138 70.3
MSTRG.18774 Avicennia marina HOM05D005659 ORTHO05D007059 1.3e-49 199.9 137 70.8
ECA236G2734 Erigeron canadensis HOM05D005659 ORTHO05D007059 1.7e-49 199.5 145 69.7
BraA08t35432Z Brassica rapa HOM05D005659 ORTHO05D007059 3.8e-49 198.4 133 72.9
Cc01_g08780 Coffea canephora HOM05D005659 ORTHO05D007059 3.8e-49 198.4 143 67.8
Aqoxy4G02709 Aquilegia oxysepala HOM05D005659 ORTHO05D007059 5.0e-49 198.0 147 70.1
unitig_0.g1472 Utricularia gibba HOM05D005659 ORTHO05D007059 5.0e-49 198.0 144 68.8
Gohir.D07G115000 Gossypium hirsutum HOM05D005659 ORTHO05D007059 6.5e-49 197.6 143 69.9
Migut.D02409 Erythranthe guttata HOM05D005659 ORTHO05D007059 3.2e-48 195.3 117 76.1
RcHm_v2.0_Chr5g0046981 Rosa chinensis HOM05D005659 ORTHO05D007059 5.5e-48 194.5 142 71.1
Gorai.001G123200 Gossypium raimondii HOM05D005659 ORTHO05D007059 9.4e-48 193.7 143 68.5
CSS0045008 Camellia sinensis var. sinensis HOM05D005659 ORTHO05D007059 2.1e-47 192.6 142 66.9
CSS0022105 Camellia sinensis var. sinensis HOM05D005659 ORTHO05D007059 3.6e-47 191.8 149 63.8
EL10Ac4g08170 Beta vulgaris HOM05D005659 ORTHO05D007059 4.6e-47 191.4 117 75.2
vmacro14338 Vaccinium macrocarpon HOM05D005659 ORTHO05D007059 1.8e-46 189.5 143 67.1
Duzib170G0332 Durio zibethinus HOM05D005659 ORTHO05D007059 8.8e-46 187.2 143 67.1
FAN11G1786 Fragaria x ananassa HOM05D005659 ORTHO05D007059 1.1e-45 186.8 147 68.7
Actinidia37070 Actinidia chinensis HOM05D005659 ORTHO05D007059 2.0e-45 186.0 146 65.1
FvH4_3g25770 Fragaria vesca HOM05D005659 ORTHO05D007059 9.7e-45 183.7 145 67.6
FAN25G1572 Fragaria x ananassa HOM05D005659 ORTHO05D007059 9.7e-45 183.7 142 67.6
FAN21G2850 Fragaria x ananassa HOM05D005659 ORTHO05D007059 1.7e-44 183.0 147 65.3
C08p03620 Brassica napus HOM05D005659 ORTHO05D007059 2.8e-44 182.2 115 74.8
Lsat_1_v5_gn_7_85921 Lactuca sativa HOM05D005659 ORTHO05D007059 2.8e-44 182.2 147 64.6
FAN16G1033 Fragaria x ananassa HOM05D005659 ORTHO05D007059 4.8e-44 181.4 147 64.6
SGA_v2.0_scaffold7G03995 Striga asiatica HOM05D005659 ORTHO05D007059 4.8e-44 181.4 138 66.7
Actinidia35474 Actinidia chinensis HOM05D005659 ORTHO05D007059 3.1e-43 178.7 146 63.0
Os04g0414700 Oryza sativa ssp. japonica HOM05D005659 ORTHO05D007059 9.1e-43 177.2 138 64.5
HPP92_009876 Vanilla planifolia HOM05D005659 ORTHO05D007059 1.5e-42 176.4 145 63.4
Zm00001eb083680 Zea mays HOM05D005659 ORTHO05D007059 4.5e-42 174.9 96 82.3
ATR0579G079 Amborella trichopoda HOM05D005659 ORTHO05D007059 1.3e-41 173.3 146 63.7
Mapoly0064s0077 Marchantia polymorpha HOM05D005659 ORTHO05D007059 2.2e-41 172.6 138 64.5
Pp3c15_16690 Physcomitrium patens HOM05D005659 ORTHO05D007059 5.5e-40 167.9 145 61.4
SEGI_08129 Sequoiadendron giganteum HOM05D005659 ORTHO05D007059 7.2e-40 167.5 136 64.7
ClCG01G011760 Citrullus lanatus HOM05D005659 ORTHO05D007059 1.6e-39 166.4 86 84.9
Pp3c15_16700 Physcomitrium patens HOM05D005659 ORTHO05D007059 2.1e-39 166.0 141 58.9
Nitab4.5_0000937g0110 Nicotiana tabacum HOM05D005659 ORTHO05D007059 3.3e-37 158.7 84 83.3
SMO163G0051 Selaginella moellendorffii HOM05D005659 ORTHO05D007059 7.0e-35 151.0 90 75.6
QL01p011787 Quercus lobata HOM05D005659 ORTHO05D007059 2.0e-34 149.4 119 66.4
Nn2g14238 Nelumbo nucifera HOM05D005659 ORTHO05D007059 1.3e-33 146.7 119 61.3
AUR62001528 Chenopodium quinoa HOM05D005659 ORTHO05D007059 3.8e-33 145.2 110 64.5
BcaB03g13340 Brassica carinata HOM05D005659 ORTHO05D007059 8.5e-33 144.1 119 61.3
TAR633G2174 Trochodendron aralioides HOM05D005659 ORTHO05D007059 9.4e-32 140.6 112 65.2
Rhsim01G0203000 Rhododendron simsii HOM05D005659 ORTHO05D007059 3.6e-31 138.7 114 64.9
unitig_88.g27645 Utricularia gibba HOM05D005659 ORTHO05D007059 2.6e-29 132.5 89 69.7
Ah.08g223250 Amaranthus hybridus HOM05D005659 ORTHO05D007059 6.3e-28 127.9 116 59.5
ATR0772G031 Amborella trichopoda HOM05D005659 ORTHO05D007059 3.1e-27 125.6 121 60.3
Hund18778 Selenicereus undatus HOM05D005659 ORTHO05D007059 3.5e-26 122.1 112 57.1
Thhalv10009047m.g Eutrema salsugineum HOM05D005659 ORTHO05D007059 1.1e-24 117.1 139 48.2
Nitab4.5_0005472g0080 Nicotiana tabacum HOM05D005659 ORTHO05D007059 1.5e-21 106.7 110 54.5
Cre07.g334550 Chlamydomonas reinhardtii HOM05D005659 ORTHO05D007059 5.7e-21 104.8 92 53.3
TAR623G1200 Trochodendron aralioides HOM05D005659 ORTHO05D007059 2.4e-19 99.4 83 62.7
MCO01G581 Micromonas commoda HOM05D005659 ORTHO05D007059 2.3e-17 92.8 91 47.3
Manes.11G164551 Manihot esculenta HOM05D005659 ORTHO05D007059 3.0e-14 82.4 85 54.1
Peaxi162Scf00345g01024 Petunia axillaris HOM05D005659 ORTHO05D007059 7.0e-11 71.2 152 34.9
Nitab4.5_0003068g0060 Nicotiana tabacum HOM05D005659 ORTHO05D007059 1.6e-07 60.1 75 46.7
MD11G1234000 Malus domestica HOM05D005659 ORTHO05D007059 1.4e-06 57.0 66 53.0
MD17G1209900 Malus domestica HOM05D005659 ORTHO05D007059 8.9e-06 54.3 66 51.5


User provided reference genes

Program Settings