Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.011G095700 Phaseolus vulgaris HOM05D001200 ORTHO05D009778 2.6e-34 148.3 81 100.0
LjContig00318g0024402 Lotus japonicus HOM05D001200 ORTHO05D009778 2.0e-18 95.5 66 84.8
LjContig00319g0019579 Lotus japonicus HOM05D001200 ORTHO05D009778 2.0e-18 95.5 66 84.8
MBI10_g47590_MAGBIO Magnolia biondii HOM05D001200 ORTHO05D002731 7.5e-18 93.6 80 68.8
MBI10_g47593_MAGBIO Magnolia biondii HOM05D001200 ORTHO05D002731 7.5e-18 93.6 80 68.8
RcHm_v2.0_Chr5g0017211 Rosa chinensis HOM05D001200 ORTHO05D009778 7.5e-18 93.6 77 74.0
RcHm_v2.0_CPg0502771 Rosa chinensis HOM05D001200 ORTHO05D009778 7.5e-18 93.6 77 74.0
EL10As15g24099 Beta vulgaris HOM05D001200 ORTHO05D009778 1.7e-17 92.4 77 71.4
EL10As15g24137 Beta vulgaris HOM05D001200 ORTHO05D002731 1.7e-17 92.4 77 71.4
Lalb_Chr19g0127811 Lupinus albus HOM05D001200 ORTHO05D009778 1.7e-17 92.4 77 72.7
RcHm_v2.0_Chr5g0043031 Rosa chinensis HOM05D001200 ORTHO05D009778 2.2e-17 92.0 77 72.7
Medtr4g006110 Medicago truncatula HOM05D007371 ORTHO05D009319 3.7e-17 91.3 77 74.0
Medtr5g063410 Medicago truncatula HOM05D007371 ORTHO05D009319 3.7e-17 91.3 77 74.0
Medtr7g021710 Medicago truncatula HOM05D007371 ORTHO05D009319 3.7e-17 91.3 77 74.0
PSO548G0037 Papaver somniferum HOM05D001200 ORTHO05D009778 3.7e-17 91.3 80 70.0
Sed0017608 Sechium edule HOM05D000533 ORTHO05D006151 3.7e-17 91.3 77 70.1
Nn064s42210 Nelumbo nucifera HOM05D001200 ORTHO05D009778 4.9e-17 90.9 77 71.4
arahy.Tifrunner.gnm1.ann1.4VL02K Arachis hypogaea HOM05D001200 ORTHO05D009778 6.4e-17 90.5 75 74.7
arahy.Tifrunner.gnm1.ann1.9I8ZI2 Arachis hypogaea HOM05D001200 ORTHO05D009778 6.4e-17 90.5 75 74.7
arahy.Tifrunner.gnm1.ann1.V71EA1 Arachis hypogaea HOM05D001200 ORTHO05D009778 6.4e-17 90.5 75 74.7
Lalb_Chr07g0191771 Lupinus albus HOM05D001200 ORTHO05D009778 6.4e-17 90.5 77 72.7
Gohir.1Z049531 Gossypium hirsutum HOM05D001200 ORTHO05D009778 8.3e-17 90.1 77 72.7
Gohir.A02G134500 Gossypium hirsutum HOM05D001200 ORTHO05D009778 8.3e-17 90.1 77 72.7
Gohir.A04G053130 Gossypium hirsutum HOM05D001200 ORTHO05D009778 8.3e-17 90.1 77 72.7
Gohir.A09G040995 Gossypium hirsutum HOM05D001200 ORTHO05D009778 8.3e-17 90.1 77 72.7
Lj2g0021700 Lotus japonicus HOM05D001200 ORTHO05D009778 8.3e-17 90.1 66 81.8
Migut.D01252 Erythranthe guttata HOM05D001200 ORTHO05D009778 1.9e-16 89.0 77 70.1
Nn1g08634 Nelumbo nucifera HOM05D001200 ORTHO05D009778 2.4e-16 88.6 77 71.4
CAN.G1526.7 Capsicum annuum HOM05D001200 ORTHO05D009778 4.1e-16 87.8 77 71.4
CAN.G278.3 Capsicum annuum HOM05D001200 ORTHO05D009778 4.1e-16 87.8 77 71.4
Gohir.A08G113700 Gossypium hirsutum HOM05D001200 ORTHO05D009778 4.1e-16 87.8 77 70.1
Gohir.D04G175000 Gossypium hirsutum HOM05D001200 ORTHO05D009778 4.1e-16 87.8 77 71.4
PGR111G0025 Punica granatum HOM05D001200 ORTHO05D009778 4.1e-16 87.8 77 71.4
PGSC0003DMG402011339 Solanum tuberosum HOM05D001200 ORTHO05D009778 4.1e-16 87.8 77 71.4
Hma1.2p1_0656F.1_g196803 Hydrangea macrophylla HOM05D001200 ORTHO05D009778 5.4e-16 87.4 77 71.4
DCAR_032538 Daucus carota HOM05D001200 ORTHO05D009778 9.2e-16 86.7 77 68.8
HanXRQChr00c0336g0573661 Helianthus annuus HOM05D001200 ORTHO05D009778 3.5e-15 84.7 77 67.5
HanXRQChr02g0040741 Helianthus annuus HOM05D001200 ORTHO05D009778 3.5e-15 84.7 77 67.5
HanXRQChr02g0059711 Helianthus annuus HOM05D001200 ORTHO05D002731 3.5e-15 84.7 77 67.5
HanXRQChr05g0152441 Helianthus annuus HOM05D001200 ORTHO05D009778 3.5e-15 84.7 77 67.5
HanXRQChr09g0258511 Helianthus annuus HOM05D001200 ORTHO05D009778 3.5e-15 84.7 77 67.5
HanXRQChr11g0323751 Helianthus annuus HOM05D001200 ORTHO05D009778 3.5e-15 84.7 77 67.5
HanXRQChr15g0465441 Helianthus annuus HOM05D001200 ORTHO05D009778 3.5e-15 84.7 77 67.5
HanXRQChr15g0465451 Helianthus annuus HOM05D001200 ORTHO05D009778 3.5e-15 84.7 77 67.5
HanXRQChr17g0569731 Helianthus annuus HOM05D001200 ORTHO05D009778 3.5e-15 84.7 77 67.5
HanXRQCPg0580351 Helianthus annuus HOM05D001200 ORTHO05D002731 3.5e-15 84.7 77 67.5
SEGI_22361 Sequoiadendron giganteum HOM05D001200 ORTHO05D009778 3.5e-15 84.7 77 66.2
C07p33450 Brassica napus HOM05D001200 ORTHO05D009778 1.0e-14 83.2 77 67.5
C09p40190 Brassica napus HOM05D001200 ORTHO05D009778 1.0e-14 83.2 77 67.5
BolC2t10596H Brassica oleracea HOM05D001200 ORTHO05D009778 1.0e-14 83.2 77 67.5
BolC9t56923H Brassica oleracea HOM05D001200 ORTHO05D009778 1.0e-14 83.2 77 67.5
BolSC35t60704H Brassica oleracea HOM05D001200 ORTHO05D009778 1.0e-14 83.2 77 67.5
BolSC37t60793H Brassica oleracea HOM05D001200 ORTHO05D009778 1.0e-14 83.2 77 67.5
BolSC44t60822H Brassica oleracea HOM05D001200 ORTHO05D009778 1.0e-14 83.2 77 67.5
BolSC46t60958H Brassica oleracea HOM05D001200 ORTHO05D009778 1.0e-14 83.2 77 67.5
BolSC47t61065H Brassica oleracea HOM05D001200 ORTHO05D009778 1.0e-14 83.2 77 67.5
BraA10t43432Z Brassica rapa HOM05D001200 ORTHO05D009778 1.0e-14 83.2 77 67.5
BraSC59t46551Z Brassica rapa HOM05D001200 ORTHO05D009778 1.0e-14 83.2 77 67.5
CARHR282440 Cardamine hirsuta HOM05D001200 ORTHO05D009778 3.0e-14 81.6 77 66.2
AL9U11954 Arabidopsis lyrata HOM05D001200 ORTHO05D009778 3.9e-14 81.3 77 66.2
ATCG01070 Arabidopsis thaliana HOM05D001200 ORTHO05D009778 3.9e-14 81.3 77 66.2
Gohir.D13G164800 Gossypium hirsutum HOM05D001200 ORTHO05D009778 3.9e-14 81.3 77 64.9
CAN.G965.6 Capsicum annuum HOM05D001200 ORTHO05D009778 6.6e-14 80.5 77 67.5
HanXRQChr13g0393091 Helianthus annuus HOM05D001200 ORTHO05D009778 8.6e-14 80.1 77 63.6
Manes.17G012600 Manihot esculenta HOM05D001200 ORTHO05D009778 1.1e-13 79.7 77 63.6
Nn1g00558 Nelumbo nucifera HOM05D001200 ORTHO05D009778 1.5e-13 79.3 77 64.9
Nitab4.5_0001342g0130 Nicotiana tabacum HOM05D001200 ORTHO05D002731 1.9e-13 79.0 88 59.1
Nitab4.5_0007979g0060 Nicotiana tabacum HOM05D001200 ORTHO05D009778 2.5e-13 78.6 77 64.9
BolC6t36203H Brassica oleracea HOM05D001200 ORTHO05D009778 5.6e-13 77.4 77 62.3
Gohir.A01G112200 Gossypium hirsutum HOM05D001200 ORTHO05D009778 1.2e-12 76.3 77 62.3
arahy.Tifrunner.gnm1.ann1.DP5I98 Arachis hypogaea HOM05D001200 ORTHO05D009778 8.1e-12 73.6 69 68.1
Nitab4.5_0001313g0070 Nicotiana tabacum HOM05D001200 ORTHO05D009778 1.4e-11 72.8 77 63.6
Glyma.08G367600 Glycine max HOM05D001200 ORTHO05D009778 4.4e-10 67.8 61 68.9
Glyma.18G155400 Glycine max HOM05D001200 ORTHO05D009778 9.9e-10 66.6 64 65.6
HanXRQChr10g0289681 Helianthus annuus HOM05D001200 ORTHO05D009778 1.3e-09 66.2 66 62.1
BraSC103t45429Z Brassica rapa HOM05D001200 ORTHO05D009778 2.9e-09 65.1 63 61.9
BolSC45t60909H Brassica oleracea HOM05D001200 ORTHO05D009778 3.7e-09 64.7 61 63.9
C02p52240 Brassica napus HOM05D001200 ORTHO05D009778 4.9e-09 64.3 72 56.9
HanXRQChr09g0246681 Helianthus annuus HOM05D001200 ORTHO05D009778 6.4e-09 63.9 66 62.1
HanXRQChr17g0557751 Helianthus annuus HOM05D001200 ORTHO05D009778 6.4e-09 63.9 62 61.3
HanXRQChr17g0569741 Helianthus annuus HOM05D001200 ORTHO05D009778 6.4e-09 63.9 62 61.3
C09p24640 Brassica napus HOM05D001200 ORTHO05D009778 3.2e-08 61.6 41 80.5
BolSC29t60506H Brassica oleracea HOM05D001200 ORTHO05D009778 3.2e-08 61.6 41 80.5
BolSC29t60546H Brassica oleracea HOM05D001200 ORTHO05D009778 3.2e-08 61.6 41 80.5
BolSC35t60692H Brassica oleracea HOM05D001200 ORTHO05D009778 3.2e-08 61.6 41 80.5
BraSC179t45774Z Brassica rapa HOM05D001200 ORTHO05D009778 3.2e-08 61.6 41 80.5
BraSC143t45660Z Brassica rapa HOM05D001200 ORTHO05D009778 7.1e-08 60.5 52 69.2
HanXRQChr02g0038671 Helianthus annuus HOM05D001200 ORTHO05D009778 7.1e-08 60.5 62 58.1
HanXRQChr02g0038711 Helianthus annuus HOM05D001200 ORTHO05D009778 7.1e-08 60.5 40 77.5
HanXRQChr01g0000241 Helianthus annuus HOM05D001200 ORTHO05D009778 1.0e-06 56.6 36 80.6
BolSC49t61143H Brassica oleracea HOM05D001200 ORTHO05D009778 1.3e-06 56.2 53 66.0


User provided reference genes

Program Settings