Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.011G095100 Phaseolus vulgaris HOM05D004934 ORTHO05D005924 1.0e-55 219.9 116 100.0
VMungo1127G1656 Vigna mungo HOM05D004934 ORTHO05D005924 4.6e-53 211.1 116 94.0
Glyma.12G090500 Glycine max HOM05D004934 ORTHO05D005924 3.3e-51 204.9 116 90.5
Glyma.11G182300 Glycine max HOM05D004934 ORTHO05D005924 2.4e-49 198.7 116 88.8
Ca_19413_v3 Cicer arietinum L. HOM05D004934 ORTHO05D005924 7.9e-45 183.7 117 83.8
arahy.Tifrunner.gnm1.ann1.Q13MWU Arachis hypogaea HOM05D004934 ORTHO05D005924 3.0e-44 181.8 120 83.3
arahy.Tifrunner.gnm1.ann1.Q2H7V9 Arachis hypogaea HOM05D004934 ORTHO05D005924 3.0e-44 181.8 120 83.3
Medtr4g052910 Medicago truncatula HOM05D004934 ORTHO05D005924 3.3e-43 178.3 119 79.0
Lalb_Chr03g0028151 Lupinus albus HOM05D004934 ORTHO05D005924 2.2e-42 175.6 121 80.2
Lalb_Chr01g0004881 Lupinus albus HOM05D004934 ORTHO05D005924 5.3e-41 171.0 120 78.3
TPR.G17236 Trifolium pratense HOM05D004934 ORTHO05D005924 6.9e-41 170.6 121 77.7
Lj3g0027260 Lotus japonicus HOM05D004934 ORTHO05D005924 2.9e-39 165.2 120 76.7
Psat7g187720 Pisum sativum HOM05D004934 ORTHO05D005924 1.4e-36 156.4 120 71.7
Cfa010007 Carpinus fangiana HOM05D004934 ORTHO05D005924 2.8e-34 148.7 121 69.4
PGR102G3359 Punica granatum HOM05D004934 ORTHO05D005924 2.4e-33 145.6 116 69.0
Thecc.09G281300 Theobroma cacao HOM05D004934 ORTHO05D005924 9.1e-33 143.7 121 71.1
FvH4_5g26820 Fragaria vesca HOM05D004934 ORTHO05D005924 1.5e-32 142.9 121 67.8
FAN04G2654 Fragaria x ananassa HOM05D004934 ORTHO05D005924 1.5e-32 142.9 121 67.8
Sed0020870 Sechium edule HOM05D004934 ORTHO05D005924 2.0e-32 142.5 117 70.1
FAN13G2036 Fragaria x ananassa HOM05D004934 ORTHO05D005924 2.6e-32 142.1 121 67.8
Manes.04G003100 Manihot esculenta HOM05D004934 ORTHO05D005924 5.9e-32 141.0 123 67.5
ClCG01G011970 Citrullus lanatus HOM05D004934 ORTHO05D005924 1.3e-31 139.8 112 70.5
QL01p012137 Quercus lobata HOM05D004934 ORTHO05D005924 2.9e-31 138.7 120 65.8
RcHm_v2.0_Chr5g0045641 Rosa chinensis HOM05D004934 ORTHO05D005924 6.5e-31 137.5 120 66.7
TAR633G0561 Trochodendron aralioides HOM05D004934 ORTHO05D005924 6.5e-31 137.5 121 69.4
Duzib168G1921 Durio zibethinus HOM05D004934 ORTHO05D005924 8.5e-31 137.1 121 68.6
CiPaw.14G099500 Carya illinoinensis HOM05D004934 ORTHO05D005924 1.9e-30 136.0 120 66.7
Eucgr.B03844 Eucalyptus grandis HOM05D004934 ORTHO05D005924 1.9e-30 136.0 117 67.5
Prupe.6G131900 Prunus persica HOM05D004934 ORTHO05D005924 3.2e-30 135.2 120 65.8
Aqoxy4G02760 Aquilegia oxysepala HOM05D004934 ORTHO05D005924 5.5e-30 134.4 121 66.1
TWI31G0143 Tripterygium wilfordii HOM05D004934 ORTHO05D005924 5.5e-30 134.4 122 63.9
Nn2g14177 Nelumbo nucifera HOM05D004934 ORTHO05D005924 9.4e-30 133.7 120 68.3
CsaV3_1G014900 Cucumis sativus L. HOM05D004934 ORTHO05D005924 2.1e-29 132.5 118 66.9
GSVIVG01036114001 Vitis vinifera HOM05D004934 ORTHO05D005924 2.1e-29 132.5 118 65.3
Gohir.D08G015900 Gossypium hirsutum HOM05D004934 ORTHO05D005924 3.6e-29 131.7 122 65.6
Gorai.004G010200 Gossypium raimondii HOM05D004934 ORTHO05D005924 6.1e-29 131.0 122 64.8
MD11G1166100 Malus domestica HOM05D004934 ORTHO05D005924 6.1e-29 131.0 116 65.5
Ciclev10029605m.g Citrus clementina HOM05D004934 ORTHO05D005924 1.4e-28 129.8 119 63.0
Gohir.A08G005600 Gossypium hirsutum HOM05D004934 ORTHO05D005924 3.9e-28 128.3 122 63.9
Hund18761 Selenicereus undatus HOM05D004934 ORTHO05D005924 8.8e-28 127.1 121 66.1
RcHm_v2.0_Chr5g0046361 Rosa chinensis HOM05D004934 ORTHO05D005924 2.0e-27 125.9 128 61.7
Dinv42546 Davidia involucrata HOM05D004934 ORTHO05D005924 3.3e-27 125.2 120 65.8
Sc06g0008770 Simmondsia chinensis HOM05D004934 ORTHO05D005924 5.7e-27 124.4 121 64.5
Actinidia35468 Actinidia chinensis HOM05D004934 ORTHO05D005924 7.4e-27 124.0 122 63.1
Gohir.A09G096200 Gossypium hirsutum HOM05D004934 ORTHO05D005924 7.4e-27 124.0 116 61.2
Sabra09G0127300 Salix brachista HOM05D004934 ORTHO05D005924 9.7e-27 123.6 114 64.0
Potri.009G163100 Populus trichocarpa HOM05D004934 ORTHO05D005924 1.3e-26 123.2 119 63.9
Dinv22836 Davidia involucrata HOM05D004934 ORTHO05D005924 1.7e-26 122.9 120 63.3
Gohir.D09G095900 Gossypium hirsutum HOM05D004934 ORTHO05D005924 1.7e-26 122.9 116 60.3
THA.LOC104800543 Tarenaya hassleriana HOM05D004934 ORTHO05D005924 1.7e-26 122.9 122 63.1
Migut.N02487 Erythranthe guttata HOM05D004934 ORTHO05D005924 2.8e-26 122.1 120 64.2
Cc01_g09040 Coffea canephora HOM05D004934 ORTHO05D005924 3.7e-26 121.7 117 65.0
Hma1.2p1_0587F.1_g184270 Hydrangea macrophylla HOM05D004934 ORTHO05D005924 3.7e-26 121.7 116 62.1
MSTRG.17705 Avicennia marina HOM05D004934 ORTHO05D005924 4.8e-26 121.3 123 61.8
Sabra04G0136300 Salix brachista HOM05D004934 ORTHO05D005924 4.8e-26 121.3 126 59.5
Atru.chr3.3218 Acer truncatum HOM05D004934 ORTHO05D005924 1.1e-25 120.2 118 58.5
CANSAT54G1198 Cannabis sativa HOM05D004934 ORTHO05D005924 1.1e-25 120.2 129 58.9
Potri.004G201700 Populus trichocarpa HOM05D004934 ORTHO05D005924 1.8e-25 119.4 122 60.7
PGSC0003DMG400026356 Solanum tuberosum HOM05D004934 ORTHO05D005924 5.3e-25 117.9 120 63.3
Nitab4.5_0012586g0010 Nicotiana tabacum HOM05D004934 ORTHO05D005924 7.0e-25 117.5 123 61.8
ATR0609G030 Amborella trichopoda HOM05D004934 ORTHO05D005924 1.2e-24 116.7 121 59.5
Nitab4.5_0000755g0070 Nicotiana tabacum HOM05D004934 ORTHO05D005924 2.0e-24 115.9 123 61.0
Nitab4.5_0002914g0100 Nicotiana tabacum HOM05D004934 ORTHO05D005924 2.0e-24 115.9 122 62.3
Duzib170G0221 Durio zibethinus HOM05D004934 ORTHO05D005924 3.5e-24 115.2 121 61.2
Solyc11g068510.2 Solanum lycopersicum HOM05D004934 ORTHO05D005924 3.5e-24 115.2 120 62.5
Sopen11g027220 Solanum pennellii HOM05D004934 ORTHO05D005924 3.5e-24 115.2 120 62.5
EL10Ac7g15830 Beta vulgaris HOM05D004934 ORTHO05D005924 4.5e-24 114.8 122 62.3
MD03G1147400 Malus domestica HOM05D004934 ORTHO05D005924 4.5e-24 114.8 115 58.3
Nitab4.5_0000227g0280 Nicotiana tabacum HOM05D004934 ORTHO05D005924 4.5e-24 114.8 121 61.2
MSTRG.12371 Avicennia marina HOM05D004934 ORTHO05D005924 7.7e-24 114.0 118 60.2
AUR62036196 Chenopodium quinoa HOM05D004934 ORTHO05D005924 1.0e-23 113.6 122 62.3
Peaxi162Scf00040g00023 Petunia axillaris HOM05D004934 ORTHO05D005924 1.3e-23 113.2 121 61.2
Oeu031471.1 Olea europaea HOM05D004934 ORTHO05D005924 1.7e-23 112.8 121 59.5
CSS0038235 Camellia sinensis var. sinensis HOM05D004934 ORTHO05D005924 2.2e-23 112.5 106 64.2
AUR62009749 Chenopodium quinoa HOM05D004934 ORTHO05D005924 6.5e-23 110.9 122 60.7
Zm00001eb369670 Zea mays HOM05D004934 ORTHO05D005924 8.5e-23 110.5 116 56.9
vmacro14353 Vaccinium macrocarpon HOM05D004934 ORTHO05D005924 1.1e-22 110.2 116 57.8
Zm00001eb151060 Zea mays HOM05D004934 ORTHO05D005924 5.5e-22 107.8 116 56.9
AT2G27730 Arabidopsis thaliana HOM05D004934 ORTHO05D005924 9.4e-22 107.1 117 53.8
A07p18350 Brassica napus HOM05D004934 ORTHO05D005924 9.4e-22 107.1 122 57.4
TAR636G0935 Trochodendron aralioides HOM05D004934 ORTHO05D005924 9.4e-22 107.1 117 59.8
Carub.0004s0847 Capsella rubella HOM05D004934 ORTHO05D005924 1.2e-21 106.7 117 55.6
CARHR120400 Cardamine hirsuta HOM05D004934 ORTHO05D005924 1.2e-21 106.7 117 53.8
Sp4g10520 Schrenkiella parvula HOM05D004934 ORTHO05D005924 1.2e-21 106.7 122 56.6
BraA07t29551Z Brassica rapa HOM05D004934 ORTHO05D005924 1.6e-21 106.3 118 52.5
Lsat_1_v5_gn_6_38900 Lactuca sativa HOM05D004934 ORTHO05D005924 1.6e-21 106.3 113 60.2
Thhalv10017451m.g Eutrema salsugineum HOM05D004934 ORTHO05D005924 3.6e-21 105.1 117 53.8
CAN.G1524.5 Capsicum annuum HOM05D004934 ORTHO05D005924 4.7e-21 104.8 120 55.8
ECA233G4139 Erigeron canadensis HOM05D004934 ORTHO05D005924 1.0e-20 103.6 121 58.7
Aa31LG5G8260 Aethionema arabicum HOM05D004934 ORTHO05D005924 1.4e-20 103.2 119 54.6
AL4G22570 Arabidopsis lyrata HOM05D004934 ORTHO05D005924 1.4e-20 103.2 117 51.3
BcaC02g10898 Brassica carinata HOM05D004934 ORTHO05D005924 1.4e-20 103.2 119 52.9
C04p23930 Brassica napus HOM05D004934 ORTHO05D005924 1.4e-20 103.2 119 52.9
BolC4t23886H Brassica oleracea HOM05D004934 ORTHO05D005924 1.4e-20 103.2 119 52.9
BcaB06g28164 Brassica carinata HOM05D004934 ORTHO05D005924 1.8e-20 102.8 124 52.4
FAN11G2484 Fragaria x ananassa HOM05D004934 ORTHO05D005924 3.0e-20 102.1 121 52.9
unitig_27.g25034 Utricularia gibba HOM05D004934 ORTHO05D005924 3.0e-20 102.1 119 54.6
PSO339G6001 Papaver somniferum HOM05D004934 ORTHO05D005924 4.0e-20 101.7 116 51.7
FvH4_3g25100 Fragaria vesca HOM05D004934 ORTHO05D005924 5.2e-20 101.3 121 52.9
PSO801G0293 Papaver somniferum HOM05D004934 ORTHO05D005924 5.2e-20 101.3 116 51.7
BcaB02g10110 Brassica carinata HOM05D004934 ORTHO05D005924 6.8e-20 100.9 120 50.0
BcaC02g08235 Brassica carinata HOM05D004934 ORTHO05D005924 8.8e-20 100.5 121 52.1
C04p56900 Brassica napus HOM05D004934 ORTHO05D005924 8.8e-20 100.5 121 52.1
BolC4t27225H Brassica oleracea HOM05D004934 ORTHO05D005924 8.8e-20 100.5 121 52.1
Aqoxy2G01124 Aquilegia oxysepala HOM05D004934 ORTHO05D005924 3.4e-19 98.6 114 56.1
A04p21090 Brassica napus HOM05D004934 ORTHO05D005924 5.7e-19 97.8 115 51.3
BraA04t17678Z Brassica rapa HOM05D004934 ORTHO05D005924 5.7e-19 97.8 115 51.3
Peaxi162Scf00757g00422 Petunia axillaris HOM05D004934 ORTHO05D005924 4.8e-18 94.7 115 55.7
HanXRQChr13g0397481 Helianthus annuus HOM05D004934 ORTHO05D005924 1.1e-17 93.6 112 55.4
Lsat_1_v5_gn_2_59421 Lactuca sativa HOM05D004934 ORTHO05D005924 1.4e-17 93.2 114 52.6
SGA_v2.0_scaffold295G47520 Striga asiatica HOM05D004934 ORTHO05D005924 1.4e-17 93.2 117 55.6
HanXRQChr11g0324151 Helianthus annuus HOM05D004934 ORTHO05D005924 5.3e-17 91.3 120 50.8
FAN25G2937 Fragaria x ananassa HOM05D004934 ORTHO05D005924 7.0e-17 90.9 84 60.7
Rhsim13G0112500 Rhododendron simsii HOM05D004934 ORTHO05D005924 9.1e-17 90.5 157 44.6
DCAR_010342 Daucus carota HOM05D004934 ORTHO05D005924 2.7e-16 89.0 90 55.6
Oeu035567.1 Olea europaea HOM05D004934 ORTHO05D005924 7.7e-16 87.4 121 51.2
Gorai.009G084700 Gossypium raimondii HOM05D004934 ORTHO05D005924 1.0e-15 87.0 79 63.3
CDE12G0371 Ceratophyllum demersum HOM05D004622 ORTHO05D005431 1.7e-15 86.3 115 48.7
SalBow3G2207 Salvia bowleyana HOM05D004934 ORTHO05D005924 1.7e-15 86.3 121 48.8
SGA_v2.0_scaffold177G39414 Striga asiatica HOM05D004934 ORTHO05D005924 1.7e-15 86.3 123 52.0
PSO339G2388 Papaver somniferum HOM05D004934 ORTHO05D005924 2.2e-15 85.9 116 52.6
CDE04G1608 Ceratophyllum demersum HOM05D004934 ORTHO05D005924 2.9e-15 85.5 124 45.2
Gohir.D05G082900 Gossypium hirsutum HOM05D004934 ORTHO05D005924 3.8e-15 85.1 79 62.0
BcaC02g10901 Brassica carinata HOM05D004934 ORTHO05D005924 6.5e-15 84.3 107 48.6
Gohir.A05G080000 Gossypium hirsutum HOM05D004934 ORTHO05D005924 8.5e-15 84.0 79 62.0
PSO384G4162 Papaver somniferum HOM05D004934 ORTHO05D005924 1.1e-14 83.6 116 51.7
Os08g0559000 Oryza sativa ssp. japonica HOM05D004934 ORTHO05D005924 1.5e-14 83.2 113 51.3
Zm00001eb343400 Zea mays HOM05D004934 ORTHO05D005924 9.4e-14 80.5 85 52.9
MELO3C004698.2 Cucumis melo HOM05D004934 ORTHO05D005924 1.2e-13 80.1 94 51.1
Zm00001eb416000 Zea mays HOM05D004934 ORTHO05D005924 1.6e-13 79.7 85 52.9
MBI05_g05303_MAGBIO Magnolia biondii HOM05D004934 ORTHO05D005924 3.6e-13 78.6 120 47.5
Cpa.g.sc32.36 Carica papaya HOM05D004934 ORTHO05D005924 5.2e-12 74.7 74 56.8
DCAR_030570 Daucus carota HOM05D004934 ORTHO05D005924 5.2e-12 74.7 70 67.1
Os09g0568900 Oryza sativa ssp. japonica HOM05D004934 ORTHO05D005924 1.5e-11 73.2 78 51.3
HPP92_003219 Vanilla planifolia HOM05D004934 ORTHO05D005924 2.6e-11 72.4 79 51.9
Pp3c1_22500 Physcomitrium patens HOM05D004934 ORTHO05D005924 3.4e-11 72.0 120 43.3
ECA238G4733 Erigeron canadensis HOM05D004934 ORTHO05D005924 2.8e-10 68.9 117 45.3
Hma1.2p1_0587F.1_g184260 Hydrangea macrophylla HOM05D004934 ORTHO05D005924 8.3e-10 67.4 67 55.2
Hma1.2p1_3516F.1_g336514 Hydrangea macrophylla HOM05D004934 ORTHO05D005924 8.3e-10 67.4 67 55.2
AagrBONN_evm.TU.Sc2ySwM_228.2259 Anthoceros agrestis HOM05D004934 ORTHO05D005924 2.7e-08 62.4 114 41.2
Hma1.2p1_0413F.1_g147325 Hydrangea macrophylla HOM05D004934 ORTHO05D005924 3.5e-08 62.0 68 50.0
FAN21G3762 Fragaria x ananassa HOM05D004934 ORTHO05D005924 5.9e-08 61.2 80 57.5
Nn6g34871 Nelumbo nucifera HOM05D004934 ORTHO05D005924 7.7e-08 60.8 58 69.0
Pp3c14_2790 Physcomitrium patens HOM05D004934 ORTHO05D005924 4.2e-06 55.1 121 35.5
vmacro03322 Vaccinium macrocarpon HOM05D004934 ORTHO05D005924 5.5e-06 54.7 198 31.8


User provided reference genes

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