Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.011G095000 Phaseolus vulgaris HOM05D006357 ORTHO05D007925 9.0e-99 363.6 187 100.0
Glyma.11G182400 Glycine max HOM05D006357 ORTHO05D007925 8.2e-92 340.5 183 94.5
VMungo1127G1055 Vigna mungo HOM05D006357 ORTHO05D007925 1.8e-91 339.3 187 93.6
Lj3g0017887 Lotus japonicus HOM05D006357 ORTHO05D007925 2.6e-82 308.9 181 84.5
arahy.Tifrunner.gnm1.ann1.5186VC Arachis hypogaea HOM05D006357 ORTHO05D007925 4.5e-82 308.1 182 85.7
arahy.Tifrunner.gnm1.ann1.JXBE2X Arachis hypogaea HOM05D006357 ORTHO05D007925 2.2e-81 305.8 182 85.2
Lalb_Chr01g0004891 Lupinus albus HOM05D006357 ORTHO05D007925 9.4e-80 300.4 185 78.9
Medtr4g052840 Medicago truncatula HOM05D006357 ORTHO05D007925 2.7e-79 298.9 179 83.2
Prupe.6G132700 Prunus persica HOM05D006357 ORTHO05D007925 6.1e-79 297.7 181 80.7
Psat7g187640 Pisum sativum HOM05D006357 ORTHO05D007925 7.9e-79 297.4 181 82.3
MD03G1147800 Malus domestica HOM05D006357 ORTHO05D007925 2.3e-78 295.8 181 80.7
CiPaw.13G134700 Carya illinoinensis HOM05D006357 ORTHO05D007925 3.9e-78 295.0 181 81.2
TPR.G17225 Trifolium pratense HOM05D006357 ORTHO05D007925 3.9e-78 295.0 179 82.7
MELO3C014499.2 Cucumis melo HOM05D006357 ORTHO05D007925 8.8e-78 293.9 181 79.0
Cfa010003 Carpinus fangiana HOM05D006357 ORTHO05D007925 2.0e-77 292.7 181 79.6
ClCG02G022220 Citrullus lanatus HOM05D006357 ORTHO05D007925 2.0e-77 292.7 183 77.6
CsaV3_6G038350 Cucumis sativus L. HOM05D006357 ORTHO05D007925 3.3e-77 292.0 181 77.9
Thecc.09G281200 Theobroma cacao HOM05D006357 ORTHO05D007925 1.3e-76 290.0 181 77.9
Ca_19414_v3 Cicer arietinum L. HOM05D006357 ORTHO05D007925 1.7e-76 289.7 181 77.9
Ca_26666_v3 Cicer arietinum L. HOM05D006357 ORTHO05D007925 2.8e-76 288.9 181 77.9
CANSAT54G2809 Cannabis sativa HOM05D006357 ORTHO05D007925 3.7e-76 288.5 181 77.3
Duzib150G0376 Durio zibethinus HOM05D006357 ORTHO05D007925 4.1e-75 285.0 181 76.8
PGR119G0351 Punica granatum HOM05D006357 ORTHO05D007925 5.3e-75 284.6 182 78.6
Dinv22833 Davidia involucrata HOM05D006357 ORTHO05D007925 9.1e-75 283.9 183 74.9
QL01p012073 Quercus lobata HOM05D006357 ORTHO05D007925 2.0e-74 282.7 183 77.0
QL01p012091 Quercus lobata HOM05D006357 ORTHO05D007925 2.0e-74 282.7 183 77.6
Eucgr.J00502 Eucalyptus grandis HOM05D006357 ORTHO05D007925 3.4e-74 282.0 180 77.8
Atru.chr3.3206 Acer truncatum HOM05D006357 ORTHO05D007925 5.9e-74 281.2 181 76.2
Manes.11G162800 Manihot esculenta HOM05D006357 ORTHO05D007925 1.7e-73 279.6 183 75.4
Atru.chr3.3208 Acer truncatum HOM05D006357 ORTHO05D007925 3.8e-73 278.5 181 75.7
Sp5g16810 Schrenkiella parvula HOM05D006357 ORTHO05D007925 5.0e-73 278.1 181 74.6
Gohir.A08G005700 Gossypium hirsutum HOM05D006357 ORTHO05D007925 1.9e-72 276.2 181 73.5
A06p22010 Brassica napus HOM05D006357 ORTHO05D007925 2.5e-72 275.8 180 73.9
BraA06t25289Z Brassica rapa HOM05D006357 ORTHO05D007925 2.5e-72 275.8 180 73.9
Gohir.D08G016000 Gossypium hirsutum HOM05D006357 ORTHO05D007925 2.5e-72 275.8 181 72.9
Gorai.004G010300 Gossypium raimondii HOM05D006357 ORTHO05D007925 2.5e-72 275.8 181 72.9
GSVIVG01036107001 Vitis vinifera HOM05D006357 ORTHO05D007925 2.5e-72 275.8 181 75.7
Thhalv10010749m.g Eutrema salsugineum HOM05D006357 ORTHO05D007925 4.2e-72 275.0 181 75.1
THA.LOC104814785 Tarenaya hassleriana HOM05D006357 ORTHO05D007925 4.2e-72 275.0 181 74.6
Lj2P966T16 Lonicera japonica HOM05D006357 ORTHO05D007925 5.5e-72 274.6 183 73.8
CSS0003287 Camellia sinensis var. sinensis HOM05D006357 ORTHO05D007925 7.2e-72 274.2 181 73.5
BcaB01g01165 Brassica carinata HOM05D006357 ORTHO05D007925 9.4e-72 273.9 180 73.9
BcaC01g02047 Brassica carinata HOM05D006357 ORTHO05D007925 9.4e-72 273.9 181 73.5
C03p69190 Brassica napus HOM05D006357 ORTHO05D007925 9.4e-72 273.9 181 73.5
BolC3t19173H Brassica oleracea HOM05D006357 ORTHO05D007925 9.4e-72 273.9 181 73.5
MD11G1166600 Malus domestica HOM05D006357 ORTHO05D007925 9.4e-72 273.9 180 74.4
Cc01_g08980 Coffea canephora HOM05D006357 ORTHO05D007925 2.1e-71 272.7 178 73.6
Prupe.6G132600 Prunus persica HOM05D006357 ORTHO05D007925 2.1e-71 272.7 183 73.8
Carub.0005s1011 Capsella rubella HOM05D006357 ORTHO05D007925 4.7e-71 271.6 181 72.9
Potri.001G218400 Populus trichocarpa HOM05D006357 ORTHO05D007925 4.7e-71 271.6 182 72.5
FvH4_3g25140 Fragaria vesca HOM05D006357 ORTHO05D007925 7.9e-71 270.8 179 73.7
Hma1.2p1_0587F.1_g184180 Hydrangea macrophylla HOM05D006357 ORTHO05D007925 7.9e-71 270.8 183 70.5
TWI79G0514 Tripterygium wilfordii HOM05D006357 ORTHO05D007925 7.9e-71 270.8 180 71.1
RcHm_v2.0_Chr5g0046241 Rosa chinensis HOM05D006357 ORTHO05D007925 1.4e-70 270.0 181 72.4
AT3G44380 Arabidopsis thaliana HOM05D006357 ORTHO05D007925 1.8e-70 269.6 181 72.9
CARHR104480 Cardamine hirsuta HOM05D006357 ORTHO05D007925 1.8e-70 269.6 179 72.6
Ciclev10029363m.g Citrus clementina HOM05D006357 ORTHO05D007925 1.8e-70 269.6 181 73.5
Haze_23361 Corylus avellana HOM05D006357 ORTHO05D007925 2.3e-70 269.2 164 81.7
FAN21G3578 Fragaria x ananassa HOM05D006357 ORTHO05D007925 2.3e-70 269.2 179 73.7
Lsat_1_v5_gn_1_59200 Lactuca sativa HOM05D006357 ORTHO05D007925 3.9e-70 268.5 177 73.4
Rhsim01G0204700 Rhododendron simsii HOM05D006357 ORTHO05D007925 5.1e-70 268.1 174 73.6
Aa31LG4G13870 Aethionema arabicum HOM05D004825 ORTHO05D005415 1.5e-69 266.5 179 73.7
AL5G22540 Arabidopsis lyrata HOM05D006357 ORTHO05D007925 1.5e-69 266.5 181 72.4
TWI75G1708 Tripterygium wilfordii HOM05D006357 ORTHO05D007925 2.0e-69 266.2 180 71.1
Gohir.D07G114400 Gossypium hirsutum HOM05D006357 ORTHO05D007925 2.6e-69 265.8 179 71.5
Gorai.001G122700 Gossypium raimondii HOM05D006357 ORTHO05D007925 4.4e-69 265.0 179 71.5
Sabra16G0125700 Salix brachista HOM05D006357 ORTHO05D007925 7.4e-69 264.2 182 70.9
Aqoxy2G01095 Aquilegia oxysepala HOM05D006357 ORTHO05D007925 1.7e-68 263.1 184 70.1
Migut.N02483 Erythranthe guttata HOM05D006357 ORTHO05D007925 1.7e-68 263.1 180 71.7
SalBow3G2384 Salvia bowleyana HOM05D006357 ORTHO05D007925 1.7e-68 263.1 182 70.3
Actinidia37077 Actinidia chinensis HOM05D006357 ORTHO05D007925 3.7e-68 261.9 181 71.8
Solyc11g068550.1 Solanum lycopersicum HOM05D006357 ORTHO05D007925 4.8e-68 261.5 177 71.8
Sopen11g027270 Solanum pennellii HOM05D006357 ORTHO05D007925 4.8e-68 261.5 177 71.8
MSTRG.12374 Avicennia marina HOM05D006357 ORTHO05D007925 6.3e-68 261.2 181 69.6
MBI01_g14623_MAGBIO Magnolia biondii HOM05D006357 ORTHO05D007925 1.1e-67 260.4 180 70.6
TAR633G1946 Trochodendron aralioides HOM05D006357 ORTHO05D007925 1.1e-67 260.4 180 70.6
Gohir.A07G110700 Gossypium hirsutum HOM05D006357 ORTHO05D007925 1.4e-67 260.0 178 70.2
Lalb_Chr03g0028161 Lupinus albus HOM05D006357 ORTHO05D007925 1.4e-67 260.0 180 70.6
Nitab4.5_0006120g0030 Nicotiana tabacum HOM05D006357 ORTHO05D007925 1.8e-67 259.6 175 72.0
HanXRQChr01g0024501 Helianthus annuus HOM05D006357 ORTHO05D007925 2.4e-67 259.2 181 70.2
Nitab4.5_0005641g0010 Nicotiana tabacum HOM05D006357 ORTHO05D007925 2.4e-67 259.2 175 72.6
Sed0020794 Sechium edule HOM05D006357 ORTHO05D007925 7.0e-67 257.7 182 69.2
SGA_v2.0_scaffold177G39425 Striga asiatica HOM05D006357 ORTHO05D007925 7.0e-67 257.7 183 72.7
unitig_699.g19178 Utricularia gibba HOM05D006357 ORTHO05D007925 3.5e-66 255.4 181 68.0
PSO339G3266 Papaver somniferum HOM05D006357 ORTHO05D007925 1.3e-65 253.4 177 68.9
PSO801G0234 Papaver somniferum HOM05D006357 ORTHO05D007925 2.9e-65 252.3 177 67.8
PGR102G0344 Punica granatum HOM05D006357 ORTHO05D007925 2.9e-65 252.3 180 71.1
Ah.08g215640 Amaranthus hybridus HOM05D006357 ORTHO05D007925 1.5e-64 250.0 179 67.6
FvH4_3g25160 Fragaria vesca HOM05D006357 ORTHO05D007925 1.6e-63 246.5 177 67.8
FAN25G2095 Fragaria x ananassa HOM05D006357 ORTHO05D007925 2.1e-63 246.1 177 67.8
EL10Ac7g15835 Beta vulgaris HOM05D006357 ORTHO05D007925 3.6e-63 245.4 182 64.8
Dinv42541 Davidia involucrata HOM05D006357 ORTHO05D007925 4.7e-63 245.0 168 71.4
Nn6g34850 Nelumbo nucifera HOM05D006357 ORTHO05D007925 1.0e-62 243.8 173 67.1
Sc06g0008780 Simmondsia chinensis HOM05D006357 ORTHO05D007925 1.4e-62 243.4 181 61.3
FAN11G2870 Fragaria x ananassa HOM05D006357 ORTHO05D007925 5.2e-62 241.5 171 69.0
Aqoxy4G02740 Aquilegia oxysepala HOM05D006357 ORTHO05D007925 9.7e-61 237.3 181 65.2
Sc21g0007020 Simmondsia chinensis HOM05D006357 ORTHO05D007925 5.3e-59 231.5 189 61.9
Nn6g34849 Nelumbo nucifera HOM05D006357 ORTHO05D007925 6.5e-57 224.6 182 58.8
DCAR_006168 Daucus carota HOM05D006357 ORTHO05D007925 4.7e-55 218.4 176 60.8
AUR62009745 Chenopodium quinoa HOM05D006357 ORTHO05D007925 5.2e-54 214.9 201 55.2
Ah.15g095880 Amaranthus hybridus HOM05D006357 ORTHO05D007925 2.6e-53 212.6 193 56.5
AUR62036192 Chenopodium quinoa HOM05D006357 ORTHO05D007925 1.7e-52 209.9 200 54.0
PSO339G1489 Papaver somniferum HOM05D006357 ORTHO05D007925 7.0e-51 204.5 159 65.4
ECA248G3754 Erigeron canadensis HOM05D006357 ORTHO05D007925 1.6e-50 203.4 137 72.3
PSO384G0917 Papaver somniferum HOM05D006357 ORTHO05D007925 3.5e-50 202.2 160 63.8
AUR62036201 Chenopodium quinoa HOM05D006357 ORTHO05D007925 2.7e-47 192.6 142 68.3
Os08g0558300 Oryza sativa ssp. japonica HOM05D006357 ORTHO05D007925 2.0e-45 186.4 174 54.0
RcHm_v2.0_Chr5g0046191 Rosa chinensis HOM05D006357 ORTHO05D007925 5.0e-41 171.8 116 74.1
PGSC0003DMG400026335 Solanum tuberosum HOM05D006357 ORTHO05D007925 1.2e-39 167.2 105 77.1
Cpa.g.sc195.8 Carica papaya HOM05D006357 ORTHO05D007925 2.3e-38 162.9 107 75.7
Mapoly0079s0020 Marchantia polymorpha HOM05D006357 ORTHO05D007925 3.2e-35 152.5 178 44.4
AagrBONN_evm.TU.Sc2ySwM_117.3687 Anthoceros agrestis HOM05D006357 ORTHO05D007925 1.2e-34 150.6 185 42.2
SMO347G0335 Selaginella moellendorffii HOM05D006357 ORTHO05D007925 1.2e-34 150.6 169 47.9
ATR0820G064 Amborella trichopoda HOM05D006357 ORTHO05D007925 1.6e-31 140.2 184 44.0
SEGI_40876 Sequoiadendron giganteum HOM05D006357 ORTHO05D007925 1.8e-30 136.7 175 42.3
Pp3c21_10640 Physcomitrium patens HOM05D006357 ORTHO05D007925 2.3e-30 136.3 181 41.4
Pp3c2_16750 Physcomitrium patens HOM05D006357 ORTHO05D007925 2.3e-30 136.3 189 41.8
Actinidia35469 Actinidia chinensis HOM05D006357 ORTHO05D007925 9.8e-29 131.0 83 75.9
ATR0820G202 Amborella trichopoda HOM05D006357 ORTHO05D007925 2.5e-24 116.3 136 46.3
AUR62036200 Chenopodium quinoa HOM05D006357 ORTHO05D007925 7.3e-24 114.8 94 58.5
Pp3c9_9450 Physcomitrium patens HOM05D006357 ORTHO05D007925 2.8e-23 112.8 176 35.2
AUR62044742 Chenopodium quinoa HOM05D006357 ORTHO05D007925 1.1e-22 110.9 76 72.4
ATR0820G128 Amborella trichopoda HOM05D006357 ORTHO05D007925 5.1e-17 92.0 84 54.8
Glyma.12G090400 Glycine max HOM05D006357 ORTHO05D007925 1.8e-14 83.6 47 85.1
Zm00001eb091070 Zea mays HOM05D006357 ORTHO05D007925 4.0e-06 55.8 42 59.5


User provided reference genes

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