Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.011G091700 Phaseolus vulgaris HOM05D004126 ORTHO05D004818 7.1e-33 143.3 69 100.0
Glyma.12G086600 Glycine max HOM05D004126 ORTHO05D004818 4.7e-29 130.6 68 91.2
Glyma.11G187900 Glycine max HOM05D004126 ORTHO05D004818 1.1e-28 129.4 68 89.7
arahy.Tifrunner.gnm1.ann1.A0MYZQ Arachis hypogaea HOM05D004126 ORTHO05D004818 4.0e-28 127.5 68 88.2
arahy.Tifrunner.gnm1.ann1.IBK94M Arachis hypogaea HOM05D004126 ORTHO05D004818 4.0e-28 127.5 68 88.2
Glyma.12G182500 Glycine max HOM05D004126 ORTHO05D004818 4.0e-28 127.5 68 88.2
arahy.Tifrunner.gnm1.ann1.M99YM4 Arachis hypogaea HOM05D004126 ORTHO05D004818 5.2e-28 127.1 68 88.2
arahy.Tifrunner.gnm1.ann1.S740RW Arachis hypogaea HOM05D004126 ORTHO05D004818 5.2e-28 127.1 68 88.2
SalBow3G0427 Salvia bowleyana HOM05D004126 ORTHO05D004818 1.5e-27 125.6 67 88.1
DCAR_012178 Daucus carota HOM05D004126 ORTHO05D004818 4.4e-27 124.0 69 85.5
MELO3C021443.2 Cucumis melo HOM05D004126 ORTHO05D004818 5.8e-27 123.6 66 86.4
Lalb_Chr03g0027971 Lupinus albus HOM05D004126 ORTHO05D004818 5.8e-27 123.6 69 84.1
Actinidia35453 Actinidia chinensis HOM05D004126 ORTHO05D004818 7.6e-27 123.2 68 83.8
ClCG02G021980 Citrullus lanatus HOM05D004126 ORTHO05D004818 7.6e-27 123.2 66 86.4
Eucgr.J00455 Eucalyptus grandis HOM05D004126 ORTHO05D004818 7.6e-27 123.2 68 85.3
FvH4_3g29830 Fragaria vesca HOM05D004126 ORTHO05D004818 7.6e-27 123.2 68 85.3
Lalb_Chr24g0395191 Lupinus albus HOM05D004126 ORTHO05D004818 7.6e-27 123.2 68 86.8
Oeu050197.1 Olea europaea HOM05D004126 ORTHO05D004818 7.6e-27 123.2 68 86.8
ClCG02G021990 Citrullus lanatus HOM05D004126 ORTHO05D004818 9.9e-27 122.9 66 86.4
FAN16G2018 Fragaria x ananassa HOM05D004126 ORTHO05D004818 1.3e-26 122.5 68 85.3
FAN21G0712 Fragaria x ananassa HOM05D004126 ORTHO05D004818 1.3e-26 122.5 68 85.3
FAN25G0231 Fragaria x ananassa HOM05D004126 ORTHO05D004818 1.3e-26 122.5 68 85.3
CANSAT54G1468 Cannabis sativa HOM05D004126 ORTHO05D004818 1.7e-26 122.1 66 84.8
Potri.001G460200 Populus trichocarpa HOM05D004126 ORTHO05D004818 1.7e-26 122.1 69 82.6
Sed0026235 Sechium edule HOM05D004126 ORTHO05D004818 1.7e-26 122.1 68 82.4
Ciclev10029753m.g Citrus clementina HOM05D004126 ORTHO05D004818 2.9e-26 121.3 66 83.3
Peaxi162Scf00114g00210 Petunia axillaris HOM05D004126 ORTHO05D004818 2.9e-26 121.3 69 81.2
RcHm_v2.0_Chr5g0055141 Rosa chinensis HOM05D004126 ORTHO05D004818 2.9e-26 121.3 68 83.8
THA.LOC104800546 Tarenaya hassleriana HOM05D004126 ORTHO05D004818 2.9e-26 121.3 68 83.8
THA.LOC109117263 Tarenaya hassleriana HOM05D004126 ORTHO05D004818 2.9e-26 121.3 68 82.4
Dinv29439 Davidia involucrata HOM05D004126 ORTHO05D004818 3.8e-26 120.9 68 83.8
Glyma.13G318450 Glycine max HOM05D004126 ORTHO05D004818 3.8e-26 120.9 68 82.4
Sp7g19190 Schrenkiella parvula HOM05D004126 ORTHO05D004818 3.8e-26 120.9 69 84.1
Sed0008155 Sechium edule HOM05D004126 ORTHO05D004818 3.8e-26 120.9 68 82.4
Actinidia07223 Actinidia chinensis HOM05D004126 ORTHO05D004818 4.9e-26 120.6 68 80.9
BcaC09g51261 Brassica carinata HOM05D004126 ORTHO05D004818 4.9e-26 120.6 69 82.6
C01p15030 Brassica napus HOM05D004126 ORTHO05D004818 4.9e-26 120.6 69 82.6
BolC1t01452H Brassica oleracea HOM05D004126 ORTHO05D004818 4.9e-26 120.6 69 82.6
Lj3g0019761 Lotus japonicus HOM05D004126 ORTHO05D004818 6.4e-26 120.2 68 83.8
BraA01t01191Z Brassica rapa HOM05D004126 ORTHO05D004818 8.4e-26 119.8 69 82.6
CARHR227690 Cardamine hirsuta HOM05D004126 ORTHO05D004818 8.4e-26 119.8 69 81.2
Cc01_g09610 Coffea canephora HOM05D004126 ORTHO05D004818 8.4e-26 119.8 68 83.8
Sabra16G0311900 Salix brachista HOM05D004126 ORTHO05D004818 8.4e-26 119.8 69 79.7
CSS0041849 Camellia sinensis var. sinensis HOM05D004126 ORTHO05D004818 1.1e-25 119.4 66 83.3
MD11G1159300 Malus domestica HOM05D004126 ORTHO05D004818 1.1e-25 119.4 68 80.9
Phvul.005G126200 Phaseolus vulgaris HOM05D004126 ORTHO05D004818 1.1e-25 119.4 68 80.9
CsaV3_6G014810 Cucumis sativus L. HOM05D004126 ORTHO05D004818 1.4e-25 119.0 66 83.3
MD03G1165300 Malus domestica HOM05D004126 ORTHO05D004818 1.4e-25 119.0 68 80.9
Potri.011G156400 Populus trichocarpa HOM05D004126 ORTHO05D004818 1.4e-25 119.0 69 79.7
arahy.Tifrunner.gnm1.ann1.A24RK9 Arachis hypogaea HOM05D004126 ORTHO05D004818 1.9e-25 118.6 67 79.1
CiPaw.14G102800 Carya illinoinensis HOM05D004126 ORTHO05D004818 1.9e-25 118.6 66 80.3
ECA233G1451 Erigeron canadensis HOM05D004126 ORTHO05D004818 1.9e-25 118.6 67 80.6
Oeu035542.1 Olea europaea HOM05D004126 ORTHO05D004818 1.9e-25 118.6 68 80.9
Ah.07g202810 Amaranthus hybridus HOM05D004126 ORTHO05D004818 2.4e-25 118.2 66 84.8
Gohir.D08G014300 Gossypium hirsutum HOM05D004126 ORTHO05D004818 2.4e-25 118.2 68 80.9
Gorai.004G008700 Gossypium raimondii HOM05D004126 ORTHO05D004818 2.4e-25 118.2 68 80.9
Lsat_1_v5_gn_2_95660 Lactuca sativa HOM05D004126 ORTHO05D004818 2.4e-25 118.2 69 79.7
Medtr4g101930 Medicago truncatula HOM05D004126 ORTHO05D004818 2.4e-25 118.2 66 83.3
EL10Ac9g23026 Beta vulgaris HOM05D004126 ORTHO05D004818 3.2e-25 117.9 66 83.3
BcaNung06968 Brassica carinata HOM05D004126 ORTHO05D004818 3.2e-25 117.9 69 82.6
A08p15270 Brassica napus HOM05D004126 ORTHO05D004818 3.2e-25 117.9 69 82.6
C03p83510 Brassica napus HOM05D004126 ORTHO05D004818 3.2e-25 117.9 69 82.6
C07p51070 Brassica napus HOM05D004126 ORTHO05D004818 3.2e-25 117.9 69 82.6
BolC7t45607H Brassica oleracea HOM05D004126 ORTHO05D004818 3.2e-25 117.9 69 82.6
BraA03t14337Z Brassica rapa HOM05D004126 ORTHO05D004818 3.2e-25 117.9 69 82.6
BraA08t33505Z Brassica rapa HOM05D004126 ORTHO05D004818 3.2e-25 117.9 69 82.6
CSS0047176 Camellia sinensis var. sinensis HOM05D004126 ORTHO05D004818 3.2e-25 117.9 68 79.4
Carub.0007s2032 Capsella rubella HOM05D004126 ORTHO05D004818 3.2e-25 117.9 69 82.6
AUR62003964 Chenopodium quinoa HOM05D004126 ORTHO05D004818 3.2e-25 117.9 66 81.8
Ca_01671_v3 Cicer arietinum L. HOM05D004126 ORTHO05D004818 3.2e-25 117.9 68 82.4
Gohir.D08G014400 Gossypium hirsutum HOM05D004126 ORTHO05D004818 3.2e-25 117.9 68 80.9
Gorai.004G008800 Gossypium raimondii HOM05D004126 ORTHO05D004818 3.2e-25 117.9 68 80.9
Peaxi162Scf01284g00022 Petunia axillaris HOM05D004126 ORTHO05D004818 3.2e-25 117.9 68 80.9
BcaC01g00712 Brassica carinata HOM05D004126 ORTHO05D004818 4.1e-25 117.5 69 82.6
BolC3t20632H Brassica oleracea HOM05D004126 ORTHO05D004818 4.1e-25 117.5 69 82.6
Lalb_Chr19g0136701 Lupinus albus HOM05D004126 ORTHO05D004818 4.1e-25 117.5 69 78.3
Sopen06g030950 Solanum pennellii HOM05D004126 ORTHO05D004818 4.1e-25 117.5 69 79.7
QL01p013387 Quercus lobata HOM05D004126 ORTHO05D004818 5.4e-25 117.1 65 83.1
TPR.G28100 Trifolium pratense HOM05D004126 ORTHO05D004818 5.4e-25 117.1 66 83.3
AT4G21105 Arabidopsis thaliana HOM05D004126 ORTHO05D004818 7.1e-25 116.7 69 79.7
MSTRG.12360 Avicennia marina HOM05D004126 ORTHO05D004818 7.1e-25 116.7 68 80.9
A01p12450 Brassica napus HOM05D004126 ORTHO05D004818 7.1e-25 116.7 69 81.2
Thecc.09G289400 Theobroma cacao HOM05D004126 ORTHO05D004818 7.1e-25 116.7 68 80.9
AL7G33020 Arabidopsis lyrata HOM05D004126 ORTHO05D004818 9.2e-25 116.3 69 79.7
BcaC01g00715 Brassica carinata HOM05D004126 ORTHO05D004818 9.2e-25 116.3 69 79.7
TWI12G1250 Tripterygium wilfordii HOM05D004126 ORTHO05D004818 9.2e-25 116.3 68 80.9
ECA238G2243 Erigeron canadensis HOM05D004126 ORTHO05D004818 1.2e-24 115.9 69 78.3
Manes.04G007100 Manihot esculenta HOM05D004126 ORTHO05D004818 1.2e-24 115.9 68 76.5
PGR119G0779 Punica granatum HOM05D004126 ORTHO05D004818 1.2e-24 115.9 68 77.9
AUR62025834 Chenopodium quinoa HOM05D004126 ORTHO05D004818 1.6e-24 115.5 66 78.8
AUR62029880 Chenopodium quinoa HOM05D004126 ORTHO05D004818 1.6e-24 115.5 66 78.8
Lj3g0005404 Lotus japonicus HOM05D004126 ORTHO05D004818 1.6e-24 115.5 68 82.4
Nitab4.5_0003082g0050 Nicotiana tabacum HOM05D004126 ORTHO05D004818 2.1e-24 115.2 69 78.3
PGSC0003DMG400007147 Solanum tuberosum HOM05D004126 ORTHO05D004818 2.1e-24 115.2 69 76.8
A03p52630 Brassica napus HOM05D004126 ORTHO05D004818 2.7e-24 114.8 69 81.2
HanXRQChr04g0094651 Helianthus annuus HOM05D004126 ORTHO05D004818 2.7e-24 114.8 69 76.8
vmacro14365 Vaccinium macrocarpon HOM05D004126 ORTHO05D004818 2.7e-24 114.8 66 80.3
Eucgr.B03883 Eucalyptus grandis HOM05D004126 ORTHO05D004818 3.5e-24 114.4 66 78.8
TPR.G37632 Trifolium pratense HOM05D004126 ORTHO05D004818 3.5e-24 114.4 66 80.3
CAN.G919.11 Capsicum annuum HOM05D004126 ORTHO05D004818 4.6e-24 114.0 69 75.4
Medtr4g053330 Medicago truncatula HOM05D004126 ORTHO05D004818 4.6e-24 114.0 66 80.3
Nitab4.5_0004070g0040 Nicotiana tabacum HOM05D004126 ORTHO05D004818 4.6e-24 114.0 68 76.5
Nitab4.5_0009196g0030 Nicotiana tabacum HOM05D004126 ORTHO05D004818 4.6e-24 114.0 69 76.8
Prupe.6G122400 Prunus persica HOM05D004126 ORTHO05D004818 4.6e-24 114.0 69 75.4
ECA248G1359 Erigeron canadensis HOM05D004126 ORTHO05D004818 6.0e-24 113.6 69 73.9
Rhsim10G0039800 Rhododendron simsii HOM05D004126 ORTHO05D004818 6.0e-24 113.6 66 80.3
Manes.11G159200 Manihot esculenta HOM05D004126 ORTHO05D004818 7.8e-24 113.2 68 75.0
unitig_22.g6645 Utricularia gibba HOM05D004126 ORTHO05D004818 7.8e-24 113.2 68 76.5
GSVIVG01031376001 Vitis vinifera HOM05D004126 ORTHO05D004818 7.8e-24 113.2 68 76.5
Atru.chr3.3354 Acer truncatum HOM05D004126 ORTHO05D004818 1.0e-23 112.8 66 77.3
Duzib170G0121 Durio zibethinus HOM05D004126 ORTHO05D004818 1.0e-23 112.8 68 77.9
Gohir.A08G004000 Gossypium hirsutum HOM05D004126 ORTHO05D004818 1.0e-23 112.8 68 79.4
Hma1.2p1_0695F.1_g204510 Hydrangea macrophylla HOM05D004126 ORTHO05D004818 1.0e-23 112.8 69 76.8
Migut.D02341 Erythranthe guttata HOM05D004126 ORTHO05D004818 1.7e-23 112.1 68 77.9
Sopen03g017380 Solanum pennellii HOM05D004126 ORTHO05D004818 1.7e-23 112.1 67 76.1
CAN.G644.16 Capsicum annuum HOM05D004126 ORTHO05D004818 2.3e-23 111.7 68 75.0
Gohir.A08G004100 Gossypium hirsutum HOM05D004126 ORTHO05D004818 3.0e-23 111.3 68 77.9
Medtr2g085045 Medicago truncatula HOM05D004126 ORTHO05D004818 3.0e-23 111.3 66 80.3
Nn2g13476 Nelumbo nucifera HOM05D004126 ORTHO05D004818 3.9e-23 110.9 68 75.0
Os07g0647500 Oryza sativa ssp. japonica HOM05D004126 ORTHO05D004818 3.9e-23 110.9 68 76.5
Psat5g255840 Pisum sativum HOM05D004126 ORTHO05D004818 3.9e-23 110.9 66 80.3
Hund13926 Selenicereus undatus HOM05D004126 ORTHO05D004818 3.9e-23 110.9 66 78.8
HanXRQChr01g0019701 Helianthus annuus HOM05D004126 ORTHO05D004818 5.1e-23 110.5 69 73.9
TPR.G23418 Trifolium pratense HOM05D004126 ORTHO05D004818 5.1e-23 110.5 66 81.8
Lsat_1_v5_gn_1_62101 Lactuca sativa HOM05D004126 ORTHO05D004818 8.6e-23 109.8 69 72.5
Psat4g069800 Pisum sativum HOM05D004126 ORTHO05D004818 8.6e-23 109.8 66 78.8
MBI14_g32122_MAGBIO Magnolia biondii HOM05D004126 ORTHO05D010914 1.1e-22 109.4 68 75.0
PGR102G0539 Punica granatum HOM05D004126 ORTHO05D004818 1.1e-22 109.4 67 76.1
unitig_8.g3289 Utricularia gibba HOM05D004126 ORTHO05D004818 1.1e-22 109.4 68 75.0
Os02g0162000 Oryza sativa ssp. japonica HOM05D004126 ORTHO05D004818 1.5e-22 109.0 68 73.5
Zm00001eb329410 Zea mays HOM05D004126 ORTHO05D004818 2.5e-22 108.2 68 72.1
Gohir.A05G083000 Gossypium hirsutum HOM05D004126 ORTHO05D004818 3.3e-22 107.8 68 76.5
Gohir.D05G086000 Gossypium hirsutum HOM05D004126 ORTHO05D004818 3.3e-22 107.8 68 76.5
Gorai.009G087600 Gossypium raimondii HOM05D004126 ORTHO05D004818 3.3e-22 107.8 68 76.5
PGSC0003DMG400026528 Solanum tuberosum HOM05D004126 ORTHO05D004818 3.3e-22 107.8 68 72.1
Sc10g0010310 Simmondsia chinensis HOM05D004126 ORTHO05D004818 4.3e-22 107.5 68 72.1
Nn2g11232 Nelumbo nucifera HOM05D004126 ORTHO05D004818 7.3e-22 106.7 68 73.5
Sopen11g026730 Solanum pennellii HOM05D004126 ORTHO05D004818 7.3e-22 106.7 68 72.1
Zm00001eb351210 Zea mays HOM05D004126 ORTHO05D004818 7.3e-22 106.7 67 71.6
Migut.N02508 Erythranthe guttata HOM05D004126 ORTHO05D004818 9.6e-22 106.3 68 73.5
Zm00001eb110520 Zea mays HOM05D004126 ORTHO05D004818 2.1e-21 105.1 68 72.1
ATR1136G081 Amborella trichopoda HOM05D004126 ORTHO05D004818 2.8e-21 104.8 66 71.2
HPP92_018131 Vanilla planifolia HOM05D004126 ORTHO05D004818 2.8e-21 104.8 68 72.1
Gohir.A03G116500 Gossypium hirsutum HOM05D004126 ORTHO05D004818 1.1e-20 102.8 68 75.0
Lsat_1_v5_gn_6_39460 Lactuca sativa HOM05D004126 ORTHO05D004818 5.2e-20 100.5 66 71.2
TAR636G2319 Trochodendron aralioides HOM05D004126 ORTHO05D004818 4.4e-19 97.4 68 69.1
Nn2g13477 Nelumbo nucifera HOM05D004126 ORTHO05D004818 2.9e-18 94.7 62 69.4
PSO384G3267 Papaver somniferum HOM05D004126 ORTHO05D004818 4.9e-18 94.0 66 71.2
Aa31LG6G3140 Aethionema arabicum HOM05D003300 ORTHO05D003731 1.1e-17 92.8 53 83.0
Thhalv10026571m.g Eutrema salsugineum HOM05D004126 ORTHO05D004818 1.9e-17 92.0 53 79.2
SGA_v2.0_scaffold83G26418 Striga asiatica HOM05D004126 ORTHO05D004818 3.2e-17 91.3 52 78.8
HanXRQChr14g0451651 Helianthus annuus HOM05D004126 ORTHO05D004818 5.4e-17 90.5 50 80.0
MELO3C021444.2 Cucumis melo HOM05D004126 ORTHO05D004818 1.2e-16 89.4 50 80.0
Duzib150G0214 Durio zibethinus HOM05D004126 ORTHO05D004818 3.5e-16 87.8 52 76.9
MD03G1137200 Malus domestica HOM05D004126 ORTHO05D004818 3.5e-16 87.8 49 77.6
Haze_23434 Corylus avellana HOM05D004126 ORTHO05D004818 1.3e-15 85.9 50 80.0
SEGI_11030 Sequoiadendron giganteum HOM05D004126 ORTHO05D004818 3.0e-15 84.7 52 75.0
CDE04G1551 Ceratophyllum demersum HOM05D004126 ORTHO05D004818 5.1e-15 84.0 60 68.3
Nitab4.5_0006735g0040 Nicotiana tabacum HOM05D004126 ORTHO05D004818 2.5e-14 81.6 52 71.2
Aqoxy4G01986 Aquilegia oxysepala HOM05D004126 ORTHO05D004818 3.3e-14 81.3 45 80.0
AagrBONN_evm.TU.Sc2ySwM_228.2832 Anthoceros agrestis HOM05D004126 ORTHO05D004818 9.6e-14 79.7 59 61.0
C08p30760 Brassica napus HOM05D004126 ORTHO05D004818 9.6e-14 79.7 50 80.0
CDE02G2464 Ceratophyllum demersum HOM05D004126 ORTHO05D004818 2.1e-13 78.6 60 63.3
Aqoxy3G03824 Aquilegia oxysepala HOM05D004126 ORTHO05D004818 8.1e-13 76.6 46 80.4
Os05g0457000 Oryza sativa ssp. japonica HOM05D004126 ORTHO05D004818 1.4e-12 75.9 51 64.7
BcaC07g41056 Brassica carinata HOM05D004126 ORTHO05D004818 4.0e-12 74.3 47 78.7
DCAR_010375 Daucus carota HOM05D004126 ORTHO05D004818 4.0e-12 74.3 50 70.0
Mapoly0085s0067 Marchantia polymorpha HOM05D004126 ORTHO05D004818 1.1e-09 66.2 56 50.0
PSO384G1920 Papaver somniferum HOM05D004126 ORTHO05D004818 2.1e-08 62.0 58 55.2
C02p14630 Brassica napus HOM05D001074 ORTHO05D001188 2.7e-08 61.6 36 80.6
C06p07750 Brassica napus HOM05D001074 ORTHO05D001188 2.7e-08 61.6 36 80.6
BolC2t07590H Brassica oleracea HOM05D001074 ORTHO05D001188 2.7e-08 61.6 36 80.6
BcaB02g06868 Brassica carinata HOM05D004126 ORTHO05D004818 3.5e-08 61.2 36 72.2
C06p15650 Brassica napus HOM05D001074 ORTHO05D001188 7.9e-08 60.1 36 77.8
BcaC04g21006 Brassica carinata HOM05D001074 ORTHO05D001188 6.7e-07 57.0 36 75.0
C09p36720 Brassica napus HOM05D001074 ORTHO05D001188 6.7e-07 57.0 36 75.0
BolC9t56503H Brassica oleracea HOM05D001074 ORTHO05D001188 6.7e-07 57.0 36 75.0
Pp3c19_5160 Physcomitrium patens HOM05D004126 ORTHO05D004818 1.9e-06 55.5 61 45.9


User provided reference genes

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