Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.011G090800 Phaseolus vulgaris HOM05D004345 ORTHO05D005192 0.0e+00 1805.8 895 100.0
VMungo1215G1527 Vigna mungo HOM05D004345 ORTHO05D005192 0.0e+00 1554.3 883 86.5
VMungo1127G1998 Vigna mungo HOM05D004345 ORTHO05D005192 0.0e+00 1553.9 885 85.9
Glyma.10G030100 Glycine max HOM05D004345 ORTHO05D005192 0.0e+00 1403.7 899 77.3
Glyma.02G144000 Glycine max HOM05D004345 ORTHO05D005192 0.0e+00 1387.1 904 76.4
Lj5g0026700 Lotus japonicus HOM05D004345 ORTHO05D005192 0.0e+00 1217.2 900 68.7
Lalb_Chr21g0307461 Lupinus albus HOM05D004345 ORTHO05D005192 0.0e+00 1125.9 905 62.9
TPR.G10330 Trifolium pratense HOM05D004345 ORTHO05D005192 0.0e+00 1095.9 904 63.7
Psat5g128760 Pisum sativum HOM05D004345 ORTHO05D005192 0.0e+00 1090.1 903 62.7
Medtr3g069120 Medicago truncatula HOM05D004345 ORTHO05D005192 2.9e-304 1048.5 908 61.2
Ca_09724_v3 Cicer arietinum L. HOM05D004345 ORTHO05D005192 1.2e-278 963.4 770 63.5
CiPaw.12G040000 Carya illinoinensis HOM05D004345 ORTHO05D005192 4.7e-262 908.3 928 52.4
Cfa020657 Carpinus fangiana HOM05D004345 ORTHO05D005192 1.3e-259 900.2 940 51.5
Prupe.2G050600 Prunus persica HOM05D004345 ORTHO05D005192 2.2e-259 899.4 928 53.0
MD04G1026400 Malus domestica HOM05D004345 ORTHO05D005192 3.1e-258 895.6 917 52.2
CiPaw.16G081600 Carya illinoinensis HOM05D004345 ORTHO05D005192 2.8e-254 882.5 929 51.1
Haze_18940 Corylus avellana HOM05D004345 ORTHO05D005192 7.0e-250 867.8 924 51.2
FvH4_5g25850 Fragaria vesca HOM05D004345 ORTHO05D005192 6.2e-246 854.7 926 50.6
FAN18G0597 Fragaria x ananassa HOM05D004345 ORTHO05D005192 6.2e-246 854.7 926 50.6
FAN13G0999 Fragaria x ananassa HOM05D004345 ORTHO05D005192 5.8e-244 848.2 926 50.8
FAN04G0730 Fragaria x ananassa HOM05D004345 ORTHO05D005192 9.8e-244 847.4 924 50.4
QL07p000534 Quercus lobata HOM05D004345 ORTHO05D005192 4.9e-243 845.1 926 49.9
QL09p016785 Quercus lobata HOM05D004345 ORTHO05D005192 4.9e-243 845.1 932 50.1
Manes.14G172500 Manihot esculenta HOM05D004345 ORTHO05D005192 6.4e-243 844.7 918 50.0
CiPaw.12G046900 Carya illinoinensis HOM05D004345 ORTHO05D005192 1.9e-239 833.2 922 50.2
CANSAT21G1743 Cannabis sativa HOM05D004345 ORTHO05D005192 3.1e-237 825.9 918 48.7
QL04p019450 Quercus lobata HOM05D004345 ORTHO05D005192 2.4e-234 816.2 911 50.4
Potri.012G041300 Populus trichocarpa HOM05D004345 ORTHO05D005192 6.8e-229 798.1 916 47.6
Sed0027926 Sechium edule HOM05D004345 ORTHO05D005192 1.3e-227 793.9 914 47.2
Gohir.A11G329500 Gossypium hirsutum HOM05D004345 ORTHO05D005192 2.1e-225 786.6 923 47.5
Gorai.007G379000 Gossypium raimondii HOM05D004345 ORTHO05D005192 6.0e-225 785.0 924 47.5
Sabra12G0028400 Salix brachista HOM05D004345 ORTHO05D005192 5.6e-223 778.5 924 46.4
CsaV3_1G046170 Cucumis sativus L. HOM05D004345 ORTHO05D005192 1.2e-220 770.8 915 46.1
Ciclev10000213m.g Citrus clementina HOM05D004345 ORTHO05D005192 2.4e-218 763.1 926 46.3
MELO3C021732.2 Cucumis melo HOM05D004345 ORTHO05D005192 9.3e-218 761.1 915 46.3
Dinv36001 Davidia involucrata HOM05D004345 ORTHO05D005192 3.3e-215 752.7 904 46.9
TWI60G1145 Tripterygium wilfordii HOM05D004345 ORTHO05D005192 3.6e-214 749.2 915 47.0
Actinidia34666 Actinidia chinensis HOM05D004345 ORTHO05D005192 4.0e-213 745.7 904 46.6
TWI31G0574 Tripterygium wilfordii HOM05D004345 ORTHO05D005192 1.3e-200 704.1 902 45.5
Nn1g01729 Nelumbo nucifera HOM05D004345 ORTHO05D005192 3.7e-198 696.0 951 42.8
Lj8C411T10 Lonicera japonica HOM05D004345 ORTHO05D005192 2.6e-196 689.9 828 44.9
Dinv35989 Davidia involucrata HOM05D004345 ORTHO05D004155 6.7e-192 675.2 901 43.8
Gohir.D11G348700 Gossypium hirsutum HOM05D004345 ORTHO05D005192 8.7e-192 674.9 728 49.2
CSS0030547 Camellia sinensis var. sinensis HOM05D004345 ORTHO05D005192 8.2e-190 668.3 774 46.4
PGR044G2251 Punica granatum HOM05D004345 ORTHO05D005192 9.0e-189 664.8 911 44.6
Eucgr.C04176 Eucalyptus grandis HOM05D004345 ORTHO05D005192 1.3e-187 661.0 910 42.4
Duzib116G0224 Durio zibethinus HOM05D004345 ORTHO05D005192 5.7e-183 645.6 934 41.5
Eucgr.K02289 Eucalyptus grandis HOM05D004345 ORTHO05D005192 3.3e-175 619.8 920 40.4
CiPaw.12G047000 Carya illinoinensis HOM05D004345 ORTHO05D005192 2.8e-174 616.7 739 47.6
Hund17623 Selenicereus undatus HOM05D004345 ORTHO05D005192 1.5e-172 610.9 914 40.0
Rhsim12G0029000 Rhododendron simsii HOM05D004345 ORTHO05D005192 2.0e-172 610.5 817 43.3
RcHm_v2.0_Chr7g0216331 Rosa chinensis HOM05D004345 ORTHO05D005192 2.5e-170 603.6 916 41.7
Lsat_1_v5_gn_8_70480 Lactuca sativa HOM05D004345 ORTHO05D005192 3.0e-168 596.7 933 38.2
vmacro01076 Vaccinium macrocarpon HOM05D004345 ORTHO05D005192 1.8e-165 587.4 905 40.9
AUR62032951 Chenopodium quinoa HOM05D004345 ORTHO05D005192 2.4e-165 587.0 914 39.4
SHI21683 Sapria himalayana HOM05D004345 ORTHO05D005192 9.1e-165 585.1 875 39.1
EL10Ac9g22980 Beta vulgaris HOM05D000200 ORTHO05D001546 4.2e-162 576.2 911 38.9
DCAR_009432 Daucus carota HOM05D004345 ORTHO05D005192 1.0e-160 571.6 857 40.4
Hund25524 Selenicereus undatus HOM05D004345 ORTHO05D005192 1.4e-157 561.2 925 37.5
HanXRQChr07g0196981 Helianthus annuus HOM05D004345 ORTHO05D005192 7.7e-156 555.4 915 37.3
Ah.01g012750 Amaranthus hybridus HOM05D004345 ORTHO05D005192 3.8e-155 553.1 911 38.2
THA.LOC104803578 Tarenaya hassleriana HOM05D004345 ORTHO05D005192 3.2e-154 550.1 919 38.8
ECA238G4368 Erigeron canadensis HOM05D004345 ORTHO05D005192 3.6e-153 546.6 935 36.6
Aqoxy4G03088 Aquilegia oxysepala HOM05D004345 ORTHO05D005192 2.2e-150 537.3 937 37.5
Sopen01g042020 Solanum pennellii HOM05D004345 ORTHO05D005192 3.1e-149 533.5 927 37.1
AL3G31560 Arabidopsis lyrata HOM05D004345 ORTHO05D005192 7.0e-149 532.3 916 37.1
Solyc01g098450.4 Solanum lycopersicum HOM05D004345 ORTHO05D005192 2.7e-148 530.4 925 36.6
Nitab4.5_0008354g0010 Nicotiana tabacum HOM05D004345 ORTHO05D005192 5.9e-148 529.3 932 38.0
MSTRG.24391 Avicennia marina HOM05D004345 ORTHO05D005192 5.0e-147 526.2 960 35.2
Peaxi162Scf00434g00066 Petunia axillaris HOM05D004345 ORTHO05D005192 1.1e-146 525.0 931 36.4
ECA234G4090 Erigeron canadensis HOM05D004345 ORTHO05D005192 4.2e-146 523.1 924 36.1
AT3G18310 Arabidopsis thaliana HOM05D004345 ORTHO05D005192 1.2e-145 521.5 899 36.6
Nitab4.5_0001423g0010 Nicotiana tabacum HOM05D004345 ORTHO05D005192 6.1e-145 519.2 915 37.6
Aa31LG8G3600 Aethionema arabicum HOM05D004345 ORTHO05D005192 8.0e-145 518.8 875 36.8
Thhalv10020051m.g Eutrema salsugineum HOM05D004345 ORTHO05D005192 2.6e-143 513.8 880 37.6
Carub.0003s1810 Capsella rubella HOM05D004345 ORTHO05D005192 3.4e-143 513.5 900 36.8
Aqoxy4G01527 Aquilegia oxysepala HOM05D004345 ORTHO05D005192 5.7e-143 512.7 946 36.3
Migut.N02797 Erythranthe guttata HOM05D004345 ORTHO05D005192 2.4e-141 507.3 942 35.2
BolC5t33472H Brassica oleracea HOM05D004345 ORTHO05D005192 2.5e-138 497.3 883 35.6
Sp3g16450 Schrenkiella parvula HOM05D004345 ORTHO05D005192 5.6e-138 496.1 881 35.8
CARHR093680 Cardamine hirsuta HOM05D004345 ORTHO05D005192 9.5e-138 495.4 919 35.9
BraA05t21971Z Brassica rapa HOM05D004345 ORTHO05D005192 3.6e-137 493.4 885 35.5
A05p31330 Brassica napus HOM05D004345 ORTHO05D005192 2.3e-136 490.7 885 35.5
C05p47630 Brassica napus HOM05D004345 ORTHO05D005192 2.3e-136 490.7 884 36.1
Cc07_g15690 Coffea canephora HOM05D004345 ORTHO05D005192 2.0e-135 487.6 963 36.1
Nitab4.5_0001903g0100 Nicotiana tabacum HOM05D004345 ORTHO05D005192 1.9e-133 481.1 903 36.2
Ah.03g148550 Amaranthus hybridus HOM05D004345 ORTHO05D005192 1.6e-132 478.0 909 34.5
SalBow3G2318 Salvia bowleyana HOM05D004345 ORTHO05D005192 6.8e-128 462.6 924 34.5
Dinv39346 Davidia involucrata HOM05D004345 ORTHO05D005192 1.7e-126 458.0 801 38.0
Thhalv10003730m.g Eutrema salsugineum HOM05D004345 ORTHO05D005192 2.1e-121 441.0 763 35.3
MBI07_g11743_MAGBIO Magnolia biondii HOM05D004345 ORTHO05D005192 6.0e-116 422.9 829 35.7
QL07p001298 Quercus lobata HOM05D004345 ORTHO05D005192 4.3e-114 416.8 848 35.4
PSO210G0907 Papaver somniferum HOM05D004345 ORTHO05D005192 1.8e-112 411.4 924 32.8
Thecc.05G018000 Theobroma cacao HOM05D004345 ORTHO05D005192 8.4e-110 402.5 658 37.7
Cpa.g.sc3060.1 Carica papaya HOM05D004345 ORTHO05D005192 4.3e-106 390.2 910 31.8
Oeu031657.1 Olea europaea HOM05D004345 ORTHO05D005192 7.6e-103 379.4 532 41.2
unitig_744.g24116 Utricularia gibba HOM05D004345 ORTHO05D005192 2.4e-101 374.4 893 29.8
ATR0691G134 Amborella trichopoda HOM05D004345 ORTHO05D005192 1.7e-99 368.2 969 31.2
TAR383G0351 Trochodendron aralioides HOM05D004345 ORTHO05D005192 3.6e-97 360.5 404 47.8
HPP92_000827 Vanilla planifolia HOM05D004345 ORTHO05D005192 4.8e-97 360.1 945 32.3
Cpa.g.sc4881.1 Carica papaya HOM05D004345 ORTHO05D005192 1.3e-94 352.1 578 36.7
C05p47510 Brassica napus HOM05D004345 ORTHO05D005192 6.4e-94 349.7 676 34.6
CDE12G0342 Ceratophyllum demersum HOM05D004345 ORTHO05D005192 3.3e-90 337.4 668 34.0
COL.COLO4_14552 Corchorus olitorius HOM05D004345 ORTHO05D005192 2.7e-84 317.8 422 43.4
Os03g0240400 Oryza sativa ssp. japonica HOM05D004345 ORTHO05D005192 2.8e-81 307.8 946 28.1
Zm00001eb399070 Zea mays HOM05D004345 ORTHO05D005192 7.6e-79 299.7 933 28.3
Aqoxy7G01729 Aquilegia oxysepala HOM05D004345 ORTHO05D005192 1.8e-75 288.5 484 39.7
CDE09G0455 Ceratophyllum demersum HOM05D004345 ORTHO05D005192 1.1e-72 279.3 628 31.2
PSO384G0273 Papaver somniferum HOM05D004345 ORTHO05D005192 1.2e-68 265.8 495 34.5
ATR0446G001 Amborella trichopoda HOM05D004345 ORTHO05D005192 7.9e-68 263.1 786 29.5
Os09g0104700 Oryza sativa ssp. japonica HOM05D004345 ORTHO05D005192 2.5e-66 258.1 948 27.6
PSO210G0382 Papaver somniferum HOM05D004345 ORTHO05D005192 1.3e-62 245.7 523 32.5
PSO384G0711 Papaver somniferum HOM05D004345 ORTHO05D005192 6.3e-57 226.9 376 37.2
RcHm_v2.0_Chr6g0264721 Rosa chinensis HOM05D004345 ORTHO05D005192 1.8e-56 225.3 201 55.2
ATR1192G001 Amborella trichopoda HOM05D004345 ORTHO05D005192 2.2e-54 218.4 436 34.6
BcaB01g01503 Brassica carinata HOM05D004345 ORTHO05D005192 3.8e-54 217.6 346 36.4
QL07p000983 Quercus lobata HOM05D004345 ORTHO05D005192 5.2e-51 207.2 180 55.6
MBI07_g44810_MAGBIO Magnolia biondii HOM05D004345 ORTHO05D005192 1.0e-46 193.0 468 32.1
ATR0022G053 Amborella trichopoda HOM05D004345 ORTHO05D005192 2.2e-46 191.8 433 34.9
BcaC05g28685 Brassica carinata HOM05D004345 ORTHO05D005192 1.4e-43 182.6 292 38.7
MBI07_g37626_MAGBIO Magnolia biondii HOM05D004345 ORTHO05D005192 2.0e-42 178.7 486 30.0
SEGI_03816 Sequoiadendron giganteum HOM05D004345 ORTHO05D005192 1.4e-40 172.6 713 26.6
THA.LOC104807021 Tarenaya hassleriana HOM05D004345 ORTHO05D005192 1.8e-40 172.2 295 40.0
Psat5g200920 Pisum sativum HOM05D000856 ORTHO05D005192 1.7e-38 165.6 116 64.7
PSO407G0063 Papaver somniferum HOM05D004345 ORTHO05D005192 1.6e-36 159.1 327 33.0
Gohir.D11G289900 Gossypium hirsutum HOM05D004345 ORTHO05D005192 6.1e-36 157.1 396 29.3
Gorai.007G313800 Gossypium raimondii HOM05D004345 ORTHO05D005192 3.0e-35 154.8 396 29.0
ATR0661G336 Amborella trichopoda HOM05D004345 ORTHO05D005192 1.5e-34 152.5 523 27.7
BolC5t33532H Brassica oleracea HOM05D004345 ORTHO05D005192 2.6e-34 151.8 253 37.2
A05p31320 Brassica napus HOM05D004345 ORTHO05D005192 1.1e-32 146.4 297 30.0
BraA05t21970Z Brassica rapa HOM05D004345 ORTHO05D005192 1.1e-32 146.4 297 30.0
BcaB06g25876 Brassica carinata HOM05D004345 ORTHO05D005192 5.4e-32 144.1 207 39.6
Medtr1g071240 Medicago truncatula HOM05D000001 ORTHO05D000003 7.3e-29 133.7 194 44.8
SMO203G0127 Selaginella moellendorffii HOM05D004345 ORTHO05D005192 2.2e-25 122.1 430 25.6
ATR0792G001 Amborella trichopoda HOM05D004345 ORTHO05D005192 6.4e-25 120.6 387 27.9
ATR0964G004 Amborella trichopoda HOM05D004345 ORTHO05D005192 5.4e-24 117.5 387 28.2
SMO297G0008 Selaginella moellendorffii HOM05D004345 ORTHO05D005192 5.4e-24 117.5 512 24.4
RcHm_v2.0_Chr6g0264731 Rosa chinensis HOM05D004345 ORTHO05D005192 1.2e-23 116.3 139 46.8
Pp3c14_24820 Physcomitrium patens HOM05D004345 ORTHO05D005192 2.7e-23 115.2 656 25.2
ATR0560G006 Amborella trichopoda HOM05D004345 ORTHO05D005192 1.9e-21 109.0 203 36.9
Psat6g058760 Pisum sativum HOM05D004345 ORTHO05D005192 1.9e-21 109.0 107 54.2
AagrBONN_evm.TU.Sc2ySwM_344.4665 Anthoceros agrestis HOM05D004345 ORTHO05D005192 1.0e-19 103.2 285 28.8
Mapoly0100s0030 Marchantia polymorpha HOM05D004345 ORTHO05D005192 4.4e-18 97.8 412 24.3
Sc22g0003820 Simmondsia chinensis HOM05D004345 ORTHO05D005192 6.4e-17 94.0 190 36.3
SEGI_28583 Sequoiadendron giganteum HOM05D004345 ORTHO05D005192 1.3e-09 69.7 421 23.8
ATR0661G406 Amborella trichopoda HOM05D004345 ORTHO05D005192 1.4e-08 66.2 210 32.4
CDE04G1779 Ceratophyllum demersum HOM05D004345 ORTHO05D005192 3.2e-08 65.1 243 30.0


User provided reference genes

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