Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.011G087400 Phaseolus vulgaris HOM05D000074 ORTHO05D011823 3.4e-153 545.0 292 100.0
VMungo1127G2212 Vigna mungo HOM05D000157 ORTHO05D011823 3.1e-45 186.4 195 55.9
Phvul.011G087200 Phaseolus vulgaris HOM05D000157 ORTHO05D011823 2.2e-43 180.3 195 55.4
Phvul.011G087300 Phaseolus vulgaris HOM05D000074 ORTHO05D011823 1.4e-37 161.0 191 55.0
VMungo0720G2525 Vigna mungo HOM05D000074 ORTHO05D011823 1.8e-21 107.5 86 72.1
Glyma.11G191800 Glycine max HOM05D000157 ORTHO05D011823 2.2e-19 100.5 214 38.3
Glyma.12G082550 Glycine max HOM05D000157 ORTHO05D011823 6.5e-19 99.0 206 39.3
VMungo0647G2350 Vigna mungo HOM05D000074 ORTHO05D011823 1.3e-16 91.3 86 64.0
VMungo0540G1827 Vigna mungo HOM05D004073 ORTHO05D004785 5.7e-15 85.9 82 63.4
Phvul.011G168900 Phaseolus vulgaris HOM05D000157 ORTHO05D011823 2.1e-14 84.0 102 44.1
Medtr4g056590 Medicago truncatula HOM05D000086 ORTHO05D000311 3.8e-11 73.2 204 31.4
arahy.Tifrunner.gnm1.ann1.CF6KXU Arachis hypogaea HOM05D000157 ORTHO05D000311 1.1e-10 71.6 207 30.9
Phvul.011G169222 Phaseolus vulgaris HOM05D000157 ORTHO05D011823 1.1e-10 71.6 153 34.0
arahy.Tifrunner.gnm1.ann1.DI0R83 Arachis hypogaea HOM05D000157 ORTHO05D000311 4.2e-10 69.7 118 39.0
Phvul.011G171300 Phaseolus vulgaris HOM05D000157 ORTHO05D011823 5.5e-10 69.3 43 65.1
Phvul.011G115800 Phaseolus vulgaris HOM05D000157 ORTHO05D011823 1.6e-09 67.8 43 60.5
Phvul.011G115900 Phaseolus vulgaris HOM05D000157 ORTHO05D011823 1.6e-09 67.8 43 58.1
Phvul.011G129900 Phaseolus vulgaris HOM05D000157 ORTHO05D011823 1.6e-09 67.8 95 41.1
Phvul.011G170600 Phaseolus vulgaris HOM05D000157 ORTHO05D011823 1.6e-09 67.8 43 62.8
Phvul.011G171100 Phaseolus vulgaris HOM05D000157 ORTHO05D011823 1.6e-09 67.8 43 62.8
Phvul.011G171522 Phaseolus vulgaris HOM05D000157 ORTHO05D011823 1.6e-09 67.8 43 62.8
Phvul.011G171700 Phaseolus vulgaris HOM05D000157 ORTHO05D011823 2.7e-09 67.0 43 62.8
TPR.G31698 Trifolium pratense HOM05D000086 ORTHO05D000311 3.6e-09 66.6 104 36.5
Lalb_Chr19g0136851 Lupinus albus HOM05D000157 ORTHO05D011823 7.9e-09 65.5 42 61.9
Psat7g144080 Pisum sativum HOM05D000157 ORTHO05D000311 1.0e-08 65.1 104 38.5
Ca_03564_v3 Cicer arietinum L. HOM05D000086 ORTHO05D000311 1.8e-08 64.3 205 29.8
Phvul.011G171000 Phaseolus vulgaris HOM05D000157 ORTHO05D011823 3.0e-08 63.5 43 60.5
Phvul.011G171800 Phaseolus vulgaris HOM05D000157 ORTHO05D011823 3.0e-08 63.5 43 60.5
Phvul.011G170500 Phaseolus vulgaris HOM05D000157 ORTHO05D011823 5.1e-08 62.8 43 60.5
Phvul.011G170400 Phaseolus vulgaris HOM05D000157 ORTHO05D011823 1.5e-07 61.2 104 35.6
AL4G43600 Arabidopsis lyrata HOM05D000157 ORTHO05D008998 1.9e-07 60.8 41 58.5
Carub.0004s2712 Capsella rubella HOM05D000157 ORTHO05D008998 1.9e-07 60.8 41 58.5
Os06g0535900 Oryza sativa ssp. japonica HOM05D000157 ORTHO05D001065 1.9e-07 60.8 49 53.1
Rhsim13G0102000 Rhododendron simsii HOM05D000086 ORTHO05D000311 1.9e-07 60.8 126 33.3
Glyma.12G223700 Glycine max HOM05D000157 ORTHO05D001065 2.5e-07 60.5 43 48.8
Cfa010133 Carpinus fangiana HOM05D000086 ORTHO05D000311 3.3e-07 60.1 51 49.0
Haze_23523 Corylus avellana HOM05D000157 ORTHO05D000311 3.3e-07 60.1 45 53.3
Nitab4.5_0009096g0010 Nicotiana tabacum HOM05D000157 ORTHO05D000311 3.3e-07 60.1 50 48.0
Phvul.008G180900 Phaseolus vulgaris HOM05D000157 ORTHO05D307481 3.3e-07 60.1 38 63.2
Thecc.01G093900 Theobroma cacao HOM05D000157 ORTHO05D000691 3.3e-07 60.1 120 32.5
BolC2t09112H Brassica oleracea HOM05D000157 ORTHO05D000311 4.3e-07 59.7 61 41.0
MELO3C026961.2 Cucumis melo HOM05D000157 ORTHO05D000311 4.3e-07 59.7 47 55.3
MBI02_g41008_MAGBIO Magnolia biondii HOM05D000157 ORTHO05D000691 4.3e-07 59.7 121 28.9
Lsat_1_v5_gn_6_41901 Lactuca sativa HOM05D000157 ORTHO05D000311 5.7e-07 59.3 116 35.3
MBI02_g39347_MAGBIO Magnolia biondii HOM05D000157 ORTHO05D000691 5.7e-07 59.3 122 28.7
SGA_v2.0_scaffold50G18561 Striga asiatica HOM05D000157 ORTHO05D000691 5.7e-07 59.3 114 33.3
C02p30620 Brassica napus HOM05D000157 ORTHO05D000311 7.4e-07 58.9 61 41.0
CDE08G0354 Ceratophyllum demersum HOM05D000354 ORTHO05D000747 7.4e-07 58.9 63 38.1
Phvul.011G171322 Phaseolus vulgaris HOM05D000157 ORTHO05D011823 7.4e-07 58.9 43 53.5
Gohir.A05G142000 Gossypium hirsutum HOM05D000086 ORTHO05D008998 9.7e-07 58.5 51 45.1
Lalb_Chr25g0286431 Lupinus albus HOM05D000157 ORTHO05D001065 9.7e-07 58.5 43 46.5
Manes.03G105900 Manihot esculenta HOM05D000086 ORTHO05D001065 9.7e-07 58.5 66 34.8
MSTRG.17753 Avicennia marina HOM05D000157 ORTHO05D000311 1.3e-06 58.2 116 30.2
Glyma.07G056200 Glycine max HOM05D000354 ORTHO05D000717 1.3e-06 58.2 48 50.0
Glyma.16G025100 Glycine max HOM05D000354 ORTHO05D000717 1.3e-06 58.2 48 50.0
HanXRQChr02g0040631 Helianthus annuus HOM05D000157 ORTHO05D000691 1.3e-06 58.2 42 52.4
Manes.15G181700 Manihot esculenta HOM05D000086 ORTHO05D001065 1.3e-06 58.2 42 42.9
Oeu008366.1 Olea europaea HOM05D000157 ORTHO05D000311 1.3e-06 58.2 71 38.0
TPR.G38984 Trifolium pratense HOM05D000157 ORTHO05D001065 1.3e-06 58.2 42 47.6
CANSAT64G1154 Cannabis sativa HOM05D000003 ORTHO05D000004 1.6e-06 57.8 59 39.0
AUR62005088 Chenopodium quinoa HOM05D000157 ORTHO05D020420 1.6e-06 57.8 71 38.0
Medtr2g079320 Medicago truncatula HOM05D000157 ORTHO05D001065 1.6e-06 57.8 42 42.9
Oeu056661.1 Olea europaea HOM05D000157 ORTHO05D000311 1.6e-06 57.8 42 52.4
Phvul.007G272700 Phaseolus vulgaris HOM05D000086 ORTHO05D003081 1.6e-06 57.8 48 45.8
Rhsim04G0073000 Rhododendron simsii HOM05D000157 ORTHO05D000311 1.6e-06 57.8 59 37.3
vmacro21930 Vaccinium macrocarpon HOM05D000157 ORTHO05D000691 1.6e-06 57.8 42 50.0
MSTRG.14317 Avicennia marina HOM05D000157 ORTHO05D000311 2.2e-06 57.4 45 44.4
Oeu007303.1 Olea europaea HOM05D000157 ORTHO05D000311 2.2e-06 57.4 42 52.4
HPP92_000593 Vanilla planifolia HOM05D000157 ORTHO05D000311 2.2e-06 57.4 50 44.0
Actinidia24155 Actinidia chinensis HOM05D000437 ORTHO05D000311 2.8e-06 57.0 222 25.7
AL4G22280 Arabidopsis lyrata HOM05D000157 ORTHO05D000311 2.8e-06 57.0 42 50.0
BcaB02g08834 Brassica carinata HOM05D000086 ORTHO05D008998 2.8e-06 57.0 41 51.2
BcaC02g12293 Brassica carinata HOM05D000086 ORTHO05D008998 2.8e-06 57.0 41 51.2
C04p05540 Brassica napus HOM05D000086 ORTHO05D008998 2.8e-06 57.0 41 51.2
BolC4t23084H Brassica oleracea HOM05D000157 ORTHO05D012800 2.8e-06 57.0 64 39.1
TPR.G15351 Trifolium pratense HOM05D000354 ORTHO05D000717 2.8e-06 57.0 45 51.1
TAR623G1058 Trochodendron aralioides HOM05D000086 ORTHO05D010642 2.8e-06 57.0 67 34.3
CANSAT56G1979 Cannabis sativa HOM05D000157 ORTHO05D001065 3.7e-06 56.6 49 44.9
Cpa.g.c33616.1 Carica papaya HOM05D000082 ORTHO05D008126 3.7e-06 56.6 70 40.0
Cfa010134 Carpinus fangiana HOM05D000157 ORTHO05D000311 3.7e-06 56.6 44 52.3
Thhalv10001745m.g Eutrema salsugineum HOM05D000086 ORTHO05D008998 3.7e-06 56.6 41 51.2
Os02g0248440 Oryza sativa ssp. japonica HOM05D000157 ORTHO05D000311 3.7e-06 56.6 57 40.4
Os06g0536600 Oryza sativa ssp. japonica HOM05D000157 ORTHO05D000311 3.7e-06 56.6 58 43.1
QL01p014780 Quercus lobata HOM05D000157 ORTHO05D000311 3.7e-06 56.6 44 50.0
Sp4g26660 Schrenkiella parvula HOM05D000086 ORTHO05D008998 3.7e-06 56.6 47 46.8
Sopen01g039570 Solanum pennellii HOM05D000354 ORTHO05D000747 3.7e-06 56.6 47 44.7
Zm00001eb238430 Zea mays HOM05D001172 ORTHO05D000747 3.7e-06 56.6 62 38.7
Aa31LG5G3690 Aethionema arabicum HOM05D000086 ORTHO05D003081 4.8e-06 56.2 60 36.7
ATR0602G197 Amborella trichopoda HOM05D000157 ORTHO05D000311 4.8e-06 56.2 49 40.8
AL4G43610 Arabidopsis lyrata HOM05D000157 ORTHO05D008998 4.8e-06 56.2 41 56.1
CANSAT64G1646 Cannabis sativa HOM05D000157 ORTHO05D000295 4.8e-06 56.2 52 48.1
Ciclev10010182m.g Citrus clementina HOM05D000086 ORTHO05D001065 4.8e-06 56.2 56 37.5
Haze_23520 Corylus avellana HOM05D000157 ORTHO05D000311 4.8e-06 56.2 44 52.3
MELO3C020632.2 Cucumis melo HOM05D000157 ORTHO05D000311 4.8e-06 56.2 62 40.3
Glyma.12G060800 Glycine max HOM05D003544 ORTHO05D003830 4.8e-06 56.2 58 43.1
Gorai.009G148200 Gossypium raimondii HOM05D000086 ORTHO05D008998 4.8e-06 56.2 50 44.0
Lj3g0014526 Lotus japonicus HOM05D000086 ORTHO05D000311 4.8e-06 56.2 109 33.9
Phvul.007G128200 Phaseolus vulgaris HOM05D000086 ORTHO05D003081 4.8e-06 56.2 48 43.8
Potri.001G212101 Populus trichocarpa HOM05D000157 ORTHO05D000311 4.8e-06 56.2 44 56.8
Solyc01g095180.2 Solanum lycopersicum HOM05D000354 ORTHO05D000747 4.8e-06 56.2 53 43.4
Sopen01g038970 Solanum pennellii HOM05D000354 ORTHO05D000747 4.8e-06 56.2 53 43.4
PGSC0003DMG400000070 Solanum tuberosum HOM05D000354 ORTHO05D000747 4.8e-06 56.2 53 43.4
VMungo1080G1328 Vigna mungo HOM05D044935 ORTHO05D001065 4.8e-06 56.2 45 44.4
Aqoxy1G01040 Aquilegia oxysepala HOM05D000086 ORTHO05D010642 6.3e-06 55.8 67 35.8
BcaB02g10608 Brassica carinata HOM05D000157 ORTHO05D012800 6.3e-06 55.8 64 37.5
BcaNung02460 Brassica carinata HOM05D000157 ORTHO05D000691 6.3e-06 55.8 46 50.0
C04p15080 Brassica napus HOM05D000157 ORTHO05D012800 6.3e-06 55.8 64 37.5
C07p40800 Brassica napus HOM05D000157 ORTHO05D000691 6.3e-06 55.8 46 50.0
BolC3t21406H Brassica oleracea HOM05D000157 ORTHO05D000311 6.3e-06 55.8 42 50.0
BolC4t22184H Brassica oleracea HOM05D000086 ORTHO05D008998 6.3e-06 55.8 41 48.8
BolC7t44603H Brassica oleracea HOM05D000157 ORTHO05D000691 6.3e-06 55.8 46 50.0
Dinv20820 Davidia involucrata HOM05D000157 ORTHO05D003012 6.3e-06 55.8 70 34.3
Gohir.D05G144300 Gossypium hirsutum HOM05D000086 ORTHO05D008998 6.3e-06 55.8 50 44.0
Lj9C539T22 Lonicera japonica HOM05D000086 ORTHO05D000311 6.3e-06 55.8 66 34.8
Manes.04G012100 Manihot esculenta HOM05D000157 ORTHO05D000311 6.3e-06 55.8 121 32.2
Os06g0534900 Oryza sativa ssp. japonica HOM05D000157 ORTHO05D000311 6.3e-06 55.8 63 41.3
Phvul.005G070700 Phaseolus vulgaris HOM05D000157 ORTHO05D001065 6.3e-06 55.8 43 44.2
Rhsim09G0144100 Rhododendron simsii HOM05D000157 ORTHO05D003012 6.3e-06 55.8 46 41.3
RhsimUnG0061500 Rhododendron simsii HOM05D000157 ORTHO05D003012 6.3e-06 55.8 46 41.3
MSTRG.18709 Avicennia marina HOM05D000157 ORTHO05D000311 8.2e-06 55.5 42 50.0
A05p04730 Brassica napus HOM05D000086 ORTHO05D008998 8.2e-06 55.5 47 44.7
BraA05t19449Z Brassica rapa HOM05D000086 ORTHO05D008998 8.2e-06 55.5 47 44.7
Ciclev10001478m.g Citrus clementina HOM05D000157 ORTHO05D000691 8.2e-06 55.5 123 30.9
Cc01_g10140 Coffea canephora HOM05D000157 ORTHO05D000691 8.2e-06 55.5 118 29.7
MELO3C029463.2 Cucumis melo HOM05D000157 ORTHO05D001065 8.2e-06 55.5 62 37.1
CsaV3_1G034200 Cucumis sativus L. HOM05D000086 ORTHO05D001065 8.2e-06 55.5 51 43.1
Migut.K00516 Erythranthe guttata HOM05D000086 ORTHO05D001775 8.2e-06 55.5 42 47.6
Lj9P683T10 Lonicera japonica HOM05D000157 ORTHO05D000691 8.2e-06 55.5 42 52.4
Nitab4.5_0002629g0120 Nicotiana tabacum HOM05D000157 ORTHO05D000311 8.2e-06 55.5 50 42.0
Oeu026979.1 Olea europaea HOM05D000157 ORTHO05D000311 8.2e-06 55.5 42 52.4
Oeu026981.1 Olea europaea HOM05D000157 ORTHO05D000311 8.2e-06 55.5 42 52.4
Pp3c6_21080 Physcomitrium patens HOM05D000157 ORTHO05D026058 8.2e-06 55.5 42 52.4
Solyc01g095820.2 Solanum lycopersicum HOM05D000354 ORTHO05D000747 8.2e-06 55.5 47 42.6
Solyc11g066510.3 Solanum lycopersicum HOM05D000157 ORTHO05D000311 8.2e-06 55.5 51 43.1
vmacro10278 Vaccinium macrocarpon HOM05D000157 ORTHO05D003012 8.2e-06 55.5 42 42.9
HPP92_020031 Vanilla planifolia HOM05D000086 ORTHO05D000311 8.2e-06 55.5 41 53.7
GSVIVG01024921001 Vitis vinifera HOM05D003544 ORTHO05D003830 8.2e-06 55.5 69 39.1
Zm00001eb238220 Zea mays HOM05D000157 ORTHO05D000747 8.2e-06 55.5 57 40.4
Zm00001eb282260 Zea mays HOM05D000157 ORTHO05D000311 8.2e-06 55.5 55 41.8
Zm00001eb383460 Zea mays HOM05D000157 ORTHO05D003830 8.2e-06 55.5 65 36.9


User provided reference genes

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