Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.011G080300 Phaseolus vulgaris HOM05D000452 ORTHO05D005748 3.9e-279 964.1 489 100.0
VMungo1127G0723 Vigna mungo HOM05D000452 ORTHO05D005748 2.1e-256 888.6 490 92.0
Glyma.11G145300 Glycine max HOM05D000452 ORTHO05D005748 3.4e-246 854.7 491 88.0
Lj3g0027876 Lotus japonicus HOM05D000452 ORTHO05D005748 1.6e-216 756.1 491 80.7
Lalb_Chr01g0004351 Lupinus albus HOM05D000452 ORTHO05D005748 1.4e-215 753.1 488 80.1
Medtr4g058890 Medicago truncatula HOM05D000452 ORTHO05D005748 1.3e-213 746.5 493 77.1
arahy.Tifrunner.gnm1.ann1.I1PATR Arachis hypogaea HOM05D000452 ORTHO05D005748 1.5e-201 706.4 511 73.2
Psat7g192440 Pisum sativum HOM05D000452 ORTHO05D005748 2.5e-201 705.7 493 75.5
arahy.Tifrunner.gnm1.ann1.S7ZFT4 Arachis hypogaea HOM05D000452 ORTHO05D005748 5.6e-201 704.5 510 73.1
Lalb_Chr19g0137171 Lupinus albus HOM05D000452 ORTHO05D005748 6.2e-200 701.0 489 75.1
arahy.Tifrunner.gnm1.ann1.AXM315 Arachis hypogaea HOM05D000452 ORTHO05D005748 1.8e-199 699.5 510 73.1
arahy.Tifrunner.gnm1.ann1.WEDN33 Arachis hypogaea HOM05D000452 ORTHO05D005748 1.4e-196 689.9 504 73.8
Haze_23811 Corylus avellana HOM05D000452 ORTHO05D005748 3.7e-184 648.7 499 67.7
Ca_19270_v3 Cicer arietinum L. HOM05D000452 ORTHO05D005748 1.9e-180 636.3 493 69.6
FAN21G3667 Fragaria x ananassa HOM05D000452 ORTHO05D005748 1.3e-178 630.2 504 66.7
FvH4_3g31960 Fragaria vesca HOM05D000452 ORTHO05D005748 1.8e-178 629.8 504 66.7
MD11G1137500 Malus domestica HOM05D000452 ORTHO05D005748 2.3e-178 629.4 493 68.0
RcHm_v2.0_Chr5g0058721 Rosa chinensis HOM05D000452 ORTHO05D005748 3.0e-178 629.0 504 67.1
FAN11G0834 Fragaria x ananassa HOM05D000452 ORTHO05D005748 5.1e-178 628.2 504 66.5
MD03G1119900 Malus domestica HOM05D000452 ORTHO05D005748 9.7e-177 624.0 493 67.3
FAN25G3410 Fragaria x ananassa HOM05D000452 ORTHO05D005748 1.6e-176 623.2 503 66.2
CANSAT54G2994 Cannabis sativa HOM05D000452 ORTHO05D005748 4.8e-176 621.7 499 66.5
Thecc.09G342400 Theobroma cacao HOM05D000452 ORTHO05D005748 4.8e-176 621.7 496 65.9
CiPaw.13G114400 Carya illinoinensis HOM05D000452 ORTHO05D005748 6.3e-176 621.3 492 66.7
GSVIVG01025200001 Vitis vinifera HOM05D000452 ORTHO05D005748 8.2e-176 620.9 513 65.1
Prupe.6G103100 Prunus persica HOM05D000452 ORTHO05D005748 3.1e-175 619.0 505 66.9
TWI31G0927 Tripterygium wilfordii HOM05D000452 ORTHO05D005748 5.0e-173 611.7 497 66.8
Manes.04G019700 Manihot esculenta HOM05D000452 ORTHO05D005748 8.5e-173 610.9 496 64.9
COL.COLO4_18319 Corchorus olitorius HOM05D000452 ORTHO05D002419 1.9e-172 609.8 489 65.0
Cfa011305 Carpinus fangiana HOM05D000452 ORTHO05D005748 7.2e-172 607.8 437 71.2
Gorai.003G142700 Gossypium raimondii HOM05D000452 ORTHO05D005748 9.4e-172 607.4 495 65.7
TWI79G0017 Tripterygium wilfordii HOM05D000452 ORTHO05D005748 1.2e-171 607.1 495 65.9
Gohir.A03G032800 Gossypium hirsutum HOM05D000452 ORTHO05D005748 1.6e-171 606.7 495 65.3
QL01p021907 Quercus lobata HOM05D000452 ORTHO05D005748 3.0e-170 602.4 595 56.3
CSS0006947 Camellia sinensis var. sinensis HOM05D000452 ORTHO05D005748 1.5e-169 600.1 500 63.4
TAR636G2205 Trochodendron aralioides HOM05D000452 ORTHO05D005748 1.5e-169 600.1 501 65.9
Gohir.D03G135600 Gossypium hirsutum HOM05D000452 ORTHO05D005748 4.8e-168 595.1 496 64.7
Hma1.2p1_0307F.1_g119780 Hydrangea macrophylla HOM05D000452 ORTHO05D005748 1.4e-167 593.6 499 63.9
TAR633G0246 Trochodendron aralioides HOM05D000452 ORTHO05D005748 2.6e-166 589.3 494 63.6
Eucgr.B02508 Eucalyptus grandis HOM05D000452 ORTHO05D005748 1.0e-165 587.4 499 64.3
Potri.009G011400 Populus trichocarpa HOM05D000452 ORTHO05D005748 2.2e-165 586.3 495 64.6
Nitab4.5_0005742g0010 Nicotiana tabacum HOM05D000452 ORTHO05D005748 2.9e-165 585.9 493 61.7
Actinidia03722 Actinidia chinensis HOM05D000452 ORTHO05D005748 6.5e-165 584.7 491 62.9
TPR.G6153 Trifolium pratense HOM05D000452 ORTHO05D005748 1.6e-163 580.1 493 64.5
Peaxi162Scf00270g00311 Petunia axillaris HOM05D000452 ORTHO05D005748 6.7e-162 574.7 494 61.5
Nitab4.5_0000602g0100 Nicotiana tabacum HOM05D000452 ORTHO05D005748 8.8e-162 574.3 492 60.6
PGSC0003DMG400008083 Solanum tuberosum HOM05D000452 ORTHO05D005748 2.8e-160 569.3 492 60.4
Rhsim13G0095000 Rhododendron simsii HOM05D000452 ORTHO05D005748 6.3e-160 568.2 502 62.0
Sed0009159 Sechium edule HOM05D000452 ORTHO05D005748 1.1e-159 567.4 498 59.8
Solyc11g069520.2 Solanum lycopersicum HOM05D000452 ORTHO05D005748 1.1e-159 567.4 491 60.5
Sopen11g028230 Solanum pennellii HOM05D000452 ORTHO05D005748 1.6e-158 563.5 491 60.3
PSO339G2396 Papaver somniferum HOM05D000452 ORTHO05D005748 2.0e-158 563.1 493 60.6
Ciclev10028288m.g Citrus clementina HOM05D000452 ORTHO05D005748 5.9e-158 561.6 496 60.1
MELO3C004897.2 Cucumis melo HOM05D000452 ORTHO05D005748 1.7e-157 560.1 498 59.4
vmacro03204 Vaccinium macrocarpon HOM05D000452 ORTHO05D005748 1.7e-157 560.1 492 61.4
EL10Ac9g22533 Beta vulgaris HOM05D000452 ORTHO05D005748 1.2e-155 553.9 456 64.5
AUR62042196 Chenopodium quinoa HOM05D000452 ORTHO05D005748 1.4e-154 550.4 436 66.3
ClCG01G013590 Citrullus lanatus HOM05D000452 ORTHO05D005748 1.4e-154 550.4 486 59.7
CsaV3_1G013960 Cucumis sativus L. HOM05D000452 ORTHO05D005748 4.0e-154 548.9 478 60.5
Sc06g0010310 Simmondsia chinensis HOM05D000452 ORTHO05D005748 1.1e-153 547.4 425 64.9
AUR62024960 Chenopodium quinoa HOM05D000452 ORTHO05D005748 1.5e-153 547.0 436 66.5
Migut.D02233 Erythranthe guttata HOM05D000452 ORTHO05D005748 1.5e-153 547.0 496 59.5
BcaC05g24718 Brassica carinata HOM05D000452 ORTHO05D005748 4.4e-153 545.4 502 58.8
BolC5t29365H Brassica oleracea HOM05D000452 ORTHO05D005748 4.4e-153 545.4 502 58.8
Cc01_g11000 Coffea canephora HOM05D000452 ORTHO05D005748 4.4e-153 545.4 495 58.4
Cpa.g.sc279.1 Carica papaya HOM05D000452 ORTHO05D005748 2.8e-152 542.7 438 65.1
Oeu030194.1 Olea europaea HOM05D000452 ORTHO05D005748 3.7e-152 542.3 497 57.9
Nn2g10818 Nelumbo nucifera HOM05D000452 ORTHO05D005748 6.3e-152 541.6 475 61.3
HanXRQChr01g0019321 Helianthus annuus HOM05D000452 ORTHO05D005748 4.1e-151 538.9 485 60.4
AT1G08030 Arabidopsis thaliana HOM05D000452 ORTHO05D005748 2.0e-150 536.6 494 58.9
MSTRG.21118 Avicennia marina HOM05D000452 ORTHO05D005748 3.5e-150 535.8 479 59.1
PGR102G2372 Punica granatum HOM05D000452 ORTHO05D005748 4.5e-150 535.4 495 59.8
BraA06t23716Z Brassica rapa HOM05D000452 ORTHO05D005748 5.9e-150 535.0 500 57.6
Aqoxy1G01223 Aquilegia oxysepala HOM05D000452 ORTHO05D005748 2.9e-149 532.7 434 62.0
BcaB02g06693 Brassica carinata HOM05D000452 ORTHO05D005748 2.9e-149 532.7 500 58.0
THA.LOC104826371 Tarenaya hassleriana HOM05D000452 ORTHO05D005748 3.8e-149 532.3 493 57.8
AL1G18360 Arabidopsis lyrata HOM05D000452 ORTHO05D005748 5.0e-149 531.9 505 58.4
A06p05090 Brassica napus HOM05D000452 ORTHO05D005748 1.1e-148 530.8 442 64.0
Dinv02128 Davidia involucrata HOM05D000452 ORTHO05D005748 7.2e-148 528.1 500 59.4
Lj2C1024T12 Lonicera japonica HOM05D000452 ORTHO05D005748 2.1e-147 526.6 419 64.2
CsaV3_1G013970 Cucumis sativus L. HOM05D000452 ORTHO05D005748 1.8e-146 523.5 498 55.8
Thhalv10007441m.g Eutrema salsugineum HOM05D000452 ORTHO05D005748 3.0e-146 522.7 505 58.2
HanXRQChr07g0195801 Helianthus annuus HOM05D000452 ORTHO05D005748 4.0e-146 522.3 492 57.7
CARHR007800 Cardamine hirsuta HOM05D000452 ORTHO05D005748 6.8e-146 521.5 441 61.2
ECA248G3240 Erigeron canadensis HOM05D000452 ORTHO05D005748 6.8e-146 521.5 485 57.7
C05p06050 Brassica napus HOM05D000452 ORTHO05D005748 8.8e-146 521.2 441 62.6
THA.LOC104800598 Tarenaya hassleriana HOM05D000452 ORTHO05D005748 1.2e-145 520.8 494 56.5
Oeu014003.1 Olea europaea HOM05D000452 ORTHO05D005748 4.4e-145 518.8 437 61.8
SGA_v2.0_scaffold180G39657 Striga asiatica HOM05D000452 ORTHO05D005748 4.4e-145 518.8 461 59.2
Carub.0001s0737 Capsella rubella HOM05D000452 ORTHO05D005748 5.7e-145 518.5 491 57.4
Sp1g06650 Schrenkiella parvula HOM05D000452 ORTHO05D005748 4.8e-144 515.4 496 57.3
CsaV3_1G013990 Cucumis sativus L. HOM05D000452 ORTHO05D005748 1.1e-143 514.2 498 55.6
DCAR_022745 Daucus carota HOM05D000452 ORTHO05D005748 5.4e-143 511.9 419 61.8
CiPaw.14G081900 Carya illinoinensis HOM05D000452 ORTHO05D005748 6.5e-141 505.0 448 60.9
A08p35370 Brassica napus HOM05D000452 ORTHO05D005748 2.1e-139 500.0 500 55.6
PSO339G5930 Papaver somniferum HOM05D000452 ORTHO05D005748 4.7e-139 498.8 439 59.9
PSO384G2013 Papaver somniferum HOM05D000452 ORTHO05D005748 6.1e-139 498.4 437 59.5
BraA08t35443Z Brassica rapa HOM05D000452 ORTHO05D005748 4.0e-138 495.7 494 55.7
Zm00001eb271200 Zea mays HOM05D000452 ORTHO05D005748 4.0e-138 495.7 493 55.2
Lsat_1_v5_gn_1_64080 Lactuca sativa HOM05D000452 ORTHO05D005748 8.8e-138 494.6 435 61.8
ECA238G2818 Erigeron canadensis HOM05D000452 ORTHO05D005748 1.8e-135 486.9 493 54.4
Zm00001eb376480 Zea mays HOM05D000452 ORTHO05D005748 1.8e-135 486.9 439 58.1
BolC8t47149H Brassica oleracea HOM05D000452 ORTHO05D005748 7.0e-135 485.0 495 55.4
C08p03470 Brassica napus HOM05D000452 ORTHO05D005748 2.7e-134 483.0 500 54.8
Aa31sc122G10 Aethionema arabicum HOM05D000452 ORTHO05D005748 1.7e-133 480.3 457 56.2
CDE02G3238 Ceratophyllum demersum HOM05D000452 ORTHO05D005748 3.8e-133 479.2 470 55.1
Oeu037301.1 Olea europaea HOM05D000452 ORTHO05D005748 5.0e-133 478.8 510 52.7
BcaB03g13356 Brassica carinata HOM05D000452 ORTHO05D005748 8.6e-133 478.0 502 54.0
Lj1C203G7 Lonicera japonica HOM05D000452 ORTHO05D005748 3.0e-130 469.5 443 59.1
unitig_736.g22410 Utricularia gibba HOM05D000452 ORTHO05D005748 1.5e-129 467.2 500 52.8
SEGI_04235 Sequoiadendron giganteum HOM05D000452 ORTHO05D005748 3.0e-125 453.0 505 49.1
ATR0048G028 Amborella trichopoda HOM05D000452 ORTHO05D005748 1.9e-124 450.3 425 57.9
PSO063G2649 Papaver somniferum HOM05D000452 ORTHO05D005748 1.6e-118 430.6 394 59.6
Lsat_1_v5_gn_2_100281 Lactuca sativa HOM05D000452 ORTHO05D005748 2.0e-118 430.3 382 59.7
Atru.chr3.3611 Acer truncatum HOM05D000452 ORTHO05D005748 7.3e-116 421.8 435 55.9
MBI07_g26020_MAGBIO Magnolia biondii HOM05D000452 ORTHO05D005748 4.0e-114 416.0 408 55.9
HPP92_008616 Vanilla planifolia HOM05D000452 ORTHO05D005748 1.4e-111 407.5 309 64.4
CsaV3_1G013980 Cucumis sativus L. HOM05D000452 ORTHO05D005748 1.5e-108 397.5 482 48.5
Peaxi162Scf00034g00107 Petunia axillaris HOM05D000452 ORTHO05D005748 2.5e-108 396.7 492 47.0
Oeu001281.1 Olea europaea HOM05D000452 ORTHO05D005748 2.1e-107 393.7 383 56.9
Lsat_1_v5_gn_9_37660 Lactuca sativa HOM05D000452 ORTHO05D005748 4.1e-103 379.4 304 64.1
RhsimUnG0046400 Rhododendron simsii HOM05D000452 ORTHO05D005748 2.5e-100 370.2 448 50.7
SalBow3G4114 Salvia bowleyana HOM05D000452 ORTHO05D005748 2.8e-99 366.7 326 59.2
Hund08167 Selenicereus undatus HOM05D000452 ORTHO05D005748 2.0e-97 360.5 366 56.8
Lsat_1_v5_gn_2_91861 Lactuca sativa HOM05D000452 ORTHO05D005748 1.5e-92 344.4 301 60.1
Mapoly0061s0093 Marchantia polymorpha HOM05D000452 ORTHO05D005748 5.6e-92 342.4 446 43.9
Pp3c16_24250 Physcomitrium patens HOM05D000452 ORTHO05D005748 1.2e-86 324.7 488 42.0
AagrBONN_evm.TU.Sc2ySwM_117.3844 Anthoceros agrestis HOM05D000452 ORTHO05D005748 8.7e-85 318.5 488 40.0
DCAR_018802 Daucus carota HOM05D000452 ORTHO05D005748 7.9e-78 295.4 293 53.2
Dinv01781 Davidia involucrata HOM05D000452 ORTHO05D005748 1.0e-77 295.0 198 73.7
SHI19559 Sapria himalayana HOM05D000452 ORTHO05D005748 5.8e-73 279.3 313 48.9
SMO134G0053 Selaginella moellendorffii HOM05D000452 ORTHO05D005748 2.9e-72 276.9 318 47.8
Os06g0158200 Oryza sativa ssp. japonica HOM05D000452 ORTHO05D005748 7.9e-70 268.9 186 68.8
CBR_g51944 Chara braunii HOM05D000452 ORTHO05D005748 3.0e-69 266.9 490 35.1
Dinv32733 Davidia involucrata HOM05D000452 ORTHO05D005748 2.2e-64 250.8 241 58.9
MBI10_g19822_MAGBIO Magnolia biondii HOM05D000452 ORTHO05D005748 2.9e-64 250.4 313 50.2
TPR.G26833 Trifolium pratense HOM05D000452 ORTHO05D005748 2.9e-56 223.8 131 82.4
Lsat_1_v5_gn_5_88800 Lactuca sativa HOM05D000452 ORTHO05D005748 1.8e-50 204.5 186 58.1
PRCOL_00001963 Prasinoderma coloniale HOM05D000452 ORTHO05D005748 3.0e-37 160.6 413 30.3
Cre01.g022600 Chlamydomonas reinhardtii HOM05D000452 ORTHO05D005748 5.2e-37 159.8 310 32.6
Lsat_1_v5_gn_3_50740 Lactuca sativa HOM05D000452 ORTHO05D005748 1.3e-32 145.2 122 61.5
SHI19558 Sapria himalayana HOM05D000452 ORTHO05D000031 2.0e-28 131.3 197 38.6
Hund08166 Selenicereus undatus HOM05D000452 ORTHO05D005748 9.8e-28 129.0 83 71.1
C04p54260 Brassica napus HOM05D000452 ORTHO05D005748 1.4e-26 125.2 84 70.2
MD11G1150200 Malus domestica HOM05D000452 ORTHO05D005748 4.5e-25 120.2 80 68.8
MBI15_g38533_MAGBIO Magnolia biondii HOM05D000452 ORTHO05D005748 2.8e-19 100.9 131 49.6
BcaC02g08433 Brassica carinata HOM05D000452 ORTHO05D005748 8.3e-19 99.4 67 70.1
BolC4t23229H Brassica oleracea HOM05D000452 ORTHO05D005748 1.6e-17 95.1 64 70.3
BolC2t09709H Brassica oleracea HOM05D000452 ORTHO05D005748 7.8e-17 92.8 64 68.8
HPP92_008615 Vanilla planifolia HOM05D000452 ORTHO05D005748 7.3e-15 86.3 170 35.9
Lsat_1_v5_gn_4_22460 Lactuca sativa HOM05D000344 ORTHO05D005714 1.2e-12 79.0 57 70.2
PRCOL_00002815 Prasinoderma coloniale HOM05D000452 ORTHO05D333388 7.0e-10 69.7 179 28.5
C07p54990 Brassica napus HOM05D000452 ORTHO05D005748 9.2e-10 69.3 46 67.4
BcaC02g07555 Brassica carinata HOM05D000452 ORTHO05D005748 1.3e-08 65.5 69 52.2
Zm00001eb318140 Zea mays HOM05D000433 ORTHO05D000443 3.6e-06 57.4 100 37.0
Zm00001eb140800 Zea mays HOM05D000433 ORTHO05D000443 6.2e-06 56.6 118 34.7


User provided reference genes

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